NO12G00880.2, NO12G00880.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00880.2
Unique NameNO12G00880.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length971
Alignment locationchr12:289397..290479 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:289397..290479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00880.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00880NO12G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00880.2NO12G00880.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00880.2.cds1NO12G00880.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00880.2 ID=NO12G00880.2|Name=NO12G00880.2|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
ACGACTTCCTCCCGTGGTCTCGCAATCCACTTCAATACTTCCTCAGGGCC
CGACCAACCACGACAGACAAACACACCCGCTATTTCTCCTTCTTCTTCCG
TTCTCGGATATGGAGGCGCTTGTGGACTTGACCGCACCGTCCACTACGAC
CAAAGTCAGGGTTTCTTCCGTTCTCAATCGCAACGTCAAAGAATTTGGAG
TCGCGCACCTGTTTGATGGAAGCCCTGACACTTGCTGGAACTCAGACCAG
GTGAAAGTCTCCACTTTGAAATAGCATCTCGTTTTTCATGGTTTGTCGAT
GTTGAGGACCCTTTCTCGCAGTCAAAAATATCTTCGTTGTGCCCTGCACA
CTCCACCGCATCAGCACTGTCTTGGTCTCTTGATTGCCTGCTCATCCCCT
TGACCCACTTGTCCTCCTCCCTACTCCACAGGGCTCGCCGCAGTGGATTT
GGCTGCAGTTCCAGCGACCTGTTCACATCCATACCATTCAAATTATGTTC
CAGGGTGGCTTTGCCGCAGAAGAAATGCAAGTGGGCGTAACTTTTCATAC
CCCACTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCCTCCTCCGTCCCA
CCATTTACATTATTCGAAGACGCAACTGCAGGAGTACGGCCCAAAACAAA
AGCAGCCTCCGACCTTGTCACTAGTTTTTGCCCGAACGATGACAACAGCT
TACAATCATTCCATTTGTCGGAACCCATCGCCGTGACAGCAGCAGCACTA
GCAGTTGGTGAAGCAGGACGTGCAGCAATAGAAGCAGCAGCAGCACCAAA
ACCACCAATGGTGACAGACATGCGCCTGACTTTTTTGAGTAGTTTTGATT
TTTATGGCCGTATCACGGCGTACCAGCTGGCAGTGCTGGGATGGGAGCAA
GGTGAAGAGGAAGGGAGATAG
back to top

protein sequence of NO12G00880.2

>NO12G00880.2-protein ID=NO12G00880.2-protein|Name=NO12G00880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MFQGGFAAEEMQVGVTFHTPLSPPPPPPPPPPPPPPPPPPPPPPSPSPSS
VPPFTLFEDATAGVRPKTKAASDLVTSFCPNDDNSLQSFHLSEPIAVTAA
ALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLSSFDFYGRITAYQLAVLGW
EQGEEEGR*
back to top

mRNA from alignment at chr12:289397..290479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00880.2 ID=NO12G00880.2|Name=NO12G00880.2|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp|location=Sequence derived from alignment at chr12:289397..290479- (Nannochloropsis oceanica)
ACGACTTCCTCCCGTGGTCTCGCAATCCACTTCAATACTTCCTCAGGGCC
CGACCAACCACGACAGACAAACACACCCGCTATTTCTCCTTCTTCTTCCG
TTCTCGGATATGGAGGCGCTTGTGGACTTGACCGCACCGTCCACTACGAC
CAAAGTCAGGTACGTCGATCATCATTATCTCTTGCCCAGGCCCCGCCCCG
CCTTACCTCGCCTTTGCATCCCACGGACCGACTTGCCCGTTCACCTCTTT
ATTACACGTCCACTTCCACAGGGTTTCTTCCGTTCTCAATCGCAACGTCA
AAGAATTTGGAGTCGCGCACCTGTTTGATGGAAGCCCTGACACTTGCTGG
AACTCAGACCAGGTGAAAGTCTCCACTTTGAAATAGCATCTCGTTTTTCA
TGGTTTGTCGATGTTGAGGACCCTTTCTCGCAGTCAAAAATATCTTCGTT
GTGCCCTGCACACTCCACCGCATCAGCACTGTCTTGGTCTCTTGATTGCC
TGCTCATCCCCTTGACCCACTTGTCCTCCTCCCTACTCCACAGGGCTCGC
CGCAGTGGATTTGGCTGCAGTTCCAGCGACCTGTTCACATCCATACCATT
CAAATTATGTTCCAGGGTGGCTTTGCCGCAGAAGAAATGCAAGTGGGCGT
AACTTTTCATACCCCACTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCC
TCCTCCGTCCCACCATTTACATTATTCGAAGACGCAACTGCAGGAGTACG
GCCCAAAACAAAAGCAGCCTCCGACCTTGTCACTAGTTTTTGCCCGAACG
ATGACAACAGCTTACAATCATTCCATTTGTCGGAACCCATCGCCGTGACA
GCAGCAGCACTAGCAGTTGGTGAAGCAGGACGTGCAGCAATAGAAGCAGC
AGCAGCACCAAAACCACCAATGGTGACAGACATGCGCCTGACTTTTTTGA
GTAGTTTTGATTTTTATGGCCGTATCACGGCGTACCAGCTGGCAGTGCTG
GGATGGGAGCAAGGTGAAGAGGAAGGGAGATAG
back to top

Coding sequence (CDS) from alignment at chr12:289397..290479-

>NO12G00880.2 ID=NO12G00880.2|Name=NO12G00880.2|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr12:289397..290479- (Nannochloropsis oceanica)
ATGTTCCAGGGTGGCTTTGCCGCAGAAGAAATGCAAGTGGGCGTAACTTT
TCATACCCCACTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCCTCCTCC
GTCCCACCATTTACATTATTCGAAGACGCAACTGCAGGAGTACGGCCCAA
AACAAAAGCAGCCTCCGACCTTGTCACTAGTTTTTGCCCGAACGATGACA
ACAGCTTACAATCATTCCATTTGTCGGAACCCATCGCCGTGACAGCAGCA
GCACTAGCAGTTGGTGAAGCAGGACGTGCAGCAATAGAAGCAGCAGCAGC
ACCAAAACCACCAATGGTGACAGACATGCGCCTGACTTTTTTGAGTAGTT
TTGATTTTTATGGCCGTATCACGGCGTACCAGCTGGCAGTGCTGGGATGG
GAGCAAGGTGAAGAGGAAGGGAGATAG
back to top
Synonyms
Publications