NO12G00550, NO12G00550 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G00550
Unique Name	NO12G00550
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2240
Alignment location	chr12:204955..207194 -

Link to JBrowse

Properties


Property Name	Value
Description	GDP-D-mannose 4,6-dehydratase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:204955..207194 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0019673	GDP-mannose metabolic process
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008446	GDP-mannose 4,6-dehydratase activity
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036291	NAD(P)-bd_dom_sf
IPR006368	GDP_Man_deHydtase
IPR016040	NAD(P)-bd_dom

Homology

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BLAST of NO12G00550 vs. NCBI_GenBank
Match: AKP06418.1 (GDP-D-mannose 4,6-dehydratase [Saccharina japonica] >AUN86415.1 GDP-mannose 4,6-dehydratase 2 [Saccharina japonica])

HSP 1 Score: 561.6 bits (1446), Expect = 1.900e-156
Identity = 260/362 (71.82%), Postives = 313/362 (86.46%), Query Frame = 0

Query:   22 PDAQIELSENGERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLYLGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAFNHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDPAKAKKVIGWECEVSFDDLVKEMVEADIALVESG 384
            P+ +     +GE  K A++TG+TGQDGSYL EFLLEKGY VHG+IRRSS+FNT RI+H+Y+DRH + VR  LHYGDLTDSTNL  +I +++PDEIYNLGAMSHVKVSF+MSEYTA+ DG+G LRLLNA+R+ GLEK TRLYQASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+ YW+LVNYREAY M L NGILFNHESPRRGPTFVTRKITRAVARIH+G QKT+YLGNLDA+RDWGHARDYI+GMW+M+Q D P D+VL+TGECH+V+EFVE++F +VGMEI W GE   V E G+ K DPE+ +VKVDP+YFRPTEVELLLGD +KAK  +GW  E++F++LVK+M+++DIA V++G
Sbjct:    4 PEVKKSKVADGETPKKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAEADGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGMEITWAGE--GVEEYGHIKDDPENIVVKVDPRYFRPTEVELLLGDCSKAKAELGWVPEITFEELVKDMMKSDIANVDAG 363

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BLAST of NO12G00550 vs. NCBI_GenBank
Match: CBN80072.1 (gdp-d-mannose 4,6-dehydratase [Ectocarpus siliculosus])

HSP 1 Score: 560.1 bits (1442), Expect = 5.500e-156
Identity = 259/349 (74.21%), Postives = 306/349 (87.68%), Query Frame = 0

Query:   36 KVALLTGVTGQDGSYLCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLYLGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAFNHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDPAKAKKVIGWECEVSFDDLVKEMVEADIALVESGD 385
            K A++TG+TGQDGSYL EFLLEKGY VHG+IRRSS+FNT RI+H+Y+DRH + VR  LHYGDLTDSTNL  +I +++PDEIYNLGAMSHVKVSF+MSEYTA+ DG+G LRLLNA+R+ GLEK TRLYQASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+ YW+L+NYREAY M L NGILFNHESPRRGPTFVTRKITRAVARIH+G QKT+YLGNLDA+RDWGHARDYI+GMW+M+Q D P D+VL+TGECH+V+EFVE++F +VG EI W GE   V E G+ K DPE+ LVKVDP+YFRPTEVELLLGD  KAKK +GW  E+SF +LVK+M++ADIA V++G+
Sbjct:   13 KKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAEADGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGE--GVEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAHVDAGN 359

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BLAST of NO12G00550 vs. NCBI_GenBank
Match: XP_009041375.1 (hypothetical protein AURANDRAFT_33270 [Aureococcus anophagefferens] >EGB03951.1 hypothetical protein AURANDRAFT_33270 [Aureococcus anophagefferens])

HSP 1 Score: 559.3 bits (1440), Expect = 9.400e-156
Identity = 258/350 (73.71%), Postives = 305/350 (87.14%), Query Frame = 0

Query:   29 SENGERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLYLGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAFNHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDPAKAKKVIGWECEVSFDDLVKEMVEADIA 379
            ++ G + KVAL+TGVTGQDGSYL EFLLEKGY+VHG+IRRSS+FNT RIEH+YKD HA  VR FLHYGDLTDS+NL  +IS+++PDEIYNLGAMSHVKVSF+MSEYTA+ DGIG LRLLNAVR+ GLEK+ RLYQASTSELYGKVQ +PQ+ETTPFYPRSPYGVAKQYAYW+LVNYREAY M L NGILFNHESPRRGPTFVTRKITRAV RI    QKTLYLGNLDA+RDWGHARDY+ GMW+M+Q D PDD+VLATGECH+VREFVE +F HVG++++W GE G+  E+G + AD  H LVKVDP+Y+RPTEV+LL+GD AKA++ +GW+ +++F  L  EMV+AD+A
Sbjct:    9 AKKGAQPKVALVTGVTGQDGSYLTEFLLEKGYVVHGIIRRSSSFNTGRIEHIYKDMHADDVRLFLHYGDLTDSSNLFHIISEVKPDEIYNLGAMSHVKVSFEMSEYTAEADGIGTLRLLNAVRSAGLEKSCRLYQASTSELYGKVQAIPQTETTPFYPRSPYGVAKQYAYWMLVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVVRIKAQQQKTLYLGNLDAKRDWGHARDYVEGMWLMVQRDVPDDYVLATGECHSVREFVEVSFEHVGIKVKWTGEPGTAEEVGVDAADESHELVKVDPKYYRPTEVDLLVGDAAKARRDLGWKPKITFKKLATEMVDADMA 358

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BLAST of NO12G00550 vs. NCBI_GenBank
Match: XP_009034951.1 (hypothetical protein AURANDRAFT_23507 [Aureococcus anophagefferens] >EGB10119.1 hypothetical protein AURANDRAFT_23507 [Aureococcus anophagefferens])

HSP 1 Score: 559.3 bits (1440), Expect = 9.400e-156
Identity = 257/347 (74.06%), Postives = 306/347 (88.18%), Query Frame = 0

Query:   36 KVALLTGVTGQDGSYLCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLYLGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAFNHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDPAKAKKVIGWECEVSFDDLVKEMVEADIALVES 383
            KVAL+TG+TGQDGSYL EFLLEKGYIVHG+IRRSS+FNT RIEH+YKD HA  VR FLHYGDLTDS+NL  +IS+++PDEIYNLGAMSHVKVSF+MSEYTA+ DG+GALRLLNA+R+ GLEK+ RLYQASTSELYGKVQ +PQ+ETTPFYPRSPYGVAKQYAYW+LVNYREAY M L NGILFNHESPRRGPTFVTRKITRAV RI +GLQ TLYLGNLDA+RDWGHARDY+ GMW+M+Q D PDD+VLATGECH+VREFVE +F HVG++I+W GE G+  E+G + +D    LVK+DP+Y+RPTEV+LL+GD AKA++ +GW+ +++F  L  EMV+AD+A +ES
Sbjct:    5 KVALVTGITGQDGSYLTEFLLEKGYIVHGIIRRSSSFNTGRIEHIYKDMHADDVRLFLHYGDLTDSSNLFHIISEVKPDEIYNLGAMSHVKVSFEMSEYTAEADGVGALRLLNAMRSAGLEKSCRLYQASTSELYGKVQAIPQTETTPFYPRSPYGVAKQYAYWMLVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVVRIKRGLQSTLYLGNLDAKRDWGHARDYVEGMWLMVQRDVPDDYVLATGECHSVREFVEVSFEHVGVKIKWVGEAGTADEVGVDASDESRVLVKIDPKYYRPTEVDLLVGDAAKARRDLGWKPKITFKALATEMVDADMAELES 351

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BLAST of NO12G00550 vs. NCBI_GenBank
Match: XP_014525236.1 (GDP-mannose dehydratase [Blastocystis sp. subtype 4] >KNB41793.1 GDP-mannose dehydratase [Blastocystis sp. subtype 4])

HSP 1 Score: 558.1 bits (1437), Expect = 2.100e-155
Identity = 258/355 (72.68%), Postives = 307/355 (86.48%), Query Frame = 0

Query:   28 LSENGERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLYLGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAFNHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDPAKAKKVIGWECEVSFDDLVKEMVEADIALVES 383
            + E G+++KVAL+TG+TGQDGSYL E LL KGY VHG+IRRSS+FNT RI HLYKD H  GV FFLHYGDLTDS+NL  L++QI+PDEIYNLGA SHVKVSF +SEY+A+VDGIG LRLLNA+R CGL   TRLYQASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+A+WI+ NYREAY MFL NGILFNHESPRRGPTFVTRKITRAVARI  G+Q  LYLGNL++ RDWGHARDY+ GMW++LQ D P D+VL+TGE H VREF EKAFN VG+E+EW+GEKGSV+EIG +KA+PEH +V++DP+YFRP+EV+LL+GD +KA+K +GWE +VSF +LV+EMV+ D+   ES
Sbjct:    6 VKEEGKKKKVALITGITGQDGSYLAELLLSKGYEVHGIIRRSSSFNTGRINHLYKDPHTQGVNFFLHYGDLTDSSNLCGLMAQIQPDEIYNLGAQSHVKVSFDLSEYSAEVDGIGTLRLLNAIRTCGLANKTRLYQASTSELYGKVQEIPQRETTPFYPRSPYGVAKQFAFWIIKNYREAYGMFLSNGILFNHESPRRGPTFVTRKITRAVARIKLGVQDCLYLGNLNSIRDWGHARDYVYGMWLILQQDKPSDYVLSTGEGHTVREFCEKAFNRVGIEVEWRGEKGSVNEIGVDKANPEHVIVRIDPKYFRPSEVDLLIGDCSKAQKELGWEKKVSFQELVEEMVDCDLRSAES 360

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BLAST of NO12G00550 vs. NCBI_GenBank
Match: XP_002290502.1 (gdp-d-mannose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335] >EED92254.1 gdp-d-mannose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 554.7 bits (1428), Expect = 2.300e-154
Identity = 256/345 (74.20%), Postives = 295/345 (85.51%), Query Frame = 0

Query:   36 KVALLTGVTGQDGSYLCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLYLGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAFNHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDPAKAKKVIGWECEVSFDDLVKEMVEADIALV 381
            KVAL+TG+TGQDGSYL E LL KGY VHG+IRRSS+FNT RI+H+Y+DRH  GV+ FLHYGDL D+TNL  +I+ ++PDEIYNLGAMSHVKVSF M EYTAD DG+G LR+L+A+RACGLEK+ R YQASTSELYGKVQEVPQSETTPFYPRSPY VAKQYA+WILVNYREAY M L NGILFNHESPRRG TFVTRKIT AVARI +GL K LYLGN+DA+RDWGHARDY+ GMW MLQHDTPDD+VLATGE H VREFVEKAF H G  I WKGE G+V+E G + AD    LV++DP+YFRPTEV+LLLGDP+KAKK +GWE  + F+ LVK+M+ AD+A+V
Sbjct:    5 KVALITGITGQDGSYLTELLLSKGYTVHGIIRRSSSFNTGRIDHIYRDRHETGVKLFLHYGDLCDATNLITIIANVKPDEIYNLGAMSHVKVSFDMPEYTADCDGVGVLRMLDAIRACGLEKSCRFYQASTSELYGKVQEVPQSETTPFYPRSPYAVAKQYAFWILVNYREAYGMHLTNGILFNHESPRRGATFVTRKITIAVARITEGLDKCLYLGNIDAKRDWGHARDYVEGMWRMLQHDTPDDYVLATGETHTVREFVEKAFAHAGTTIAWKGETGTVNEYGVDAADESRVLVRIDPRYFRPTEVDLLLGDPSKAKKTLGWEATLGFEGLVKDMMTADLAMV 349

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BLAST of NO12G00550 vs. NCBI_GenBank
Match: XP_012894519.1 (uncharacterized protein [Blastocystis hominis] >CBK20471.2 unnamed protein product [Blastocystis hominis])

HSP 1 Score: 554.3 bits (1427), Expect = 3.000e-154
Identity = 259/350 (74.00%), Postives = 302/350 (86.29%), Query Frame = 0

Query:   33 ERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLYLGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAFNHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDPAKAKKVIGWECEVSFDDLVKEMVEADIALVES 383
            E+RKVAL+TG+TGQDGSYL E LL KGY VHG+IRRSS+FNT RI HLYKD H  GVRFFLHYGDLTDS+NL  L+++I+PDEIYNLGA SHVKVSF +SEY+A+VDGIG LRLLNA+R CGLEK TRLYQASTSELYGKVQ +PQ+E TPFYPRSPY VAKQ++YWI+VNYREAY MFL NGILFNHESPRRGPTFVTRKITRAV RI  G+Q  LYLGNL+A RDWGHARDY+ GMW++LQ D PDDFVL+TGE H VREF EKAF  VG+E+EW+GEK + +EIG +KA+PEH +V++DP+YFRPTEV+LL+GD  KAK V+GW+ EVSFD LV+EMV+ D+   ES
Sbjct:    9 EKRKVALITGITGQDGSYLAELLLSKGYEVHGIIRRSSSFNTGRINHLYKDPHNQGVRFFLHYGDLTDSSNLCGLMAKIQPDEIYNLGAQSHVKVSFDLSEYSAEVDGIGTLRLLNAIRTCGLEKKTRLYQASTSELYGKVQAIPQNEKTPFYPRSPYSVAKQFSYWIVVNYREAYGMFLSNGILFNHESPRRGPTFVTRKITRAVVRIKLGVQDCLYLGNLNAIRDWGHARDYVYGMWLILQQDHPDDFVLSTGEGHTVREFCEKAFKRVGIEVEWRGEKDTPNEIGVDKANPEHVIVRIDPKYFRPTEVDLLIGDCTKAKTVLGWKKEVSFDQLVEEMVDCDMKSAES 358

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BLAST of NO12G00550 vs. NCBI_GenBank
Match: CBN73934.1 (gdp-d-mannose 4,6-dehydratase [Ectocarpus siliculosus])

HSP 1 Score: 550.8 bits (1418), Expect = 3.300e-153
Identity = 254/349 (72.78%), Postives = 305/349 (87.39%), Query Frame = 0

Query:   36 KVALLTGVTGQDGSYLCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLYLGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAFNHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDPAKAKKVIGWECEVSFDDLVKEMVEADIALVESGD 385
            K A++TG+TGQDGSYL EFLLEKGY VHG+IRRSS+FNT RI+H+Y+DRH + VR  LHYGDLTDSTNL  +I +++PDEIYNLGAMSHVKVSF+MSEYTA+ DG+G LRLLNA+R+ GLEK TRLYQASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+ YW+L+NYREAY M L NGILFNHESPRRGPTFVTRKITRAVARIH+G QK +YLGNLDA+RDWGHA+DYI+GMW+M+Q D P D+VL+TGECH+V+EFV+++F +VG EI W GE   V E G+ K DPE+ +V+VDP+YFRPTEVELLLGD  KAKK +GW  E+SF DLVK+M+++DIA V++G+
Sbjct:    2 KKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAEADGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVQESFAYVGTEITWVGE--GVDEYGHVKDDPENIVVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFKDLVKDMMKSDIANVDAGN 348

[Close]

BLAST of NO12G00550 vs. NCBI_GenBank
Match: AUN86414.1 (GDP-mannose 4,6-dehydratase 1 [Saccharina japonica])

HSP 1 Score: 546.2 bits (1406), Expect = 8.200e-152
Identity = 257/374 (68.72%), Postives = 313/374 (83.69%), Query Frame = 0

Query:   13 MSMPEA--VYSPDAQIELSENGERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLYLGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAFNHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDPAKAKKVIGWECEVSFDDLVKEMVEADIALVESGD 385
            M+ PE   V    A  E  E+    K A++TG+TGQDGSYL EFLLEKGY VHG+IRRSS+FNT RI+H+Y+DRH + VR  LHYGDLTDSTNL  +I +++PDEIYNLGAMSHVKVSF+MSEYTA+ DG+G LRLLNA+R+ GLE+ TRLYQASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+ +W+LVNYREAY M L NGILFNHESPRRGPTFVTRKITRAVARIH+G QK +YLGNLDA+RDWGHA+DYI+GMW+M+Q D P D+VL+TGECH+V+EFVE++F +VG EI W GE   V E G+ K +P++ LV+VDP+YFRPTEVELLLGD  KAK  +GW  E++F +LVK+M+++DIA V++G+
Sbjct:    1 MAEPETKKVKVAPAAAEGGESSGCAKKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAEADGVGVLRLLNAIRSAGLEQKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGFWMLVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGE--GVEEFGHVKDEPDNILVRVDPRYFRPTEVELLLGDCTKAKNELGWVPEITFKELVKDMMKSDIANVDAGN 372

[Close]

BLAST of NO12G00550 vs. NCBI_GenBank
Match: OAO16564.1 (gdp-d-mannose 4,6-dehydratase [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 543.9 bits (1400), Expect = 4.100e-151
Identity = 253/350 (72.29%), Postives = 297/350 (84.86%), Query Frame = 0

Query:   33 ERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLYLGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAFNHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDPAKAKKVIGWECEVSFDDLVKEMVEADIALVES 383
            +R KVAL+TG+TGQDGSYL E LL KGY VHG+IRRSS+FNT RI HLYKD H  GV+FFLHYGDLTDS+NL  L+++I+PDEIYNLGA SHVKVSF +SEYTA+VDGIG LRLLNA+R CGLEK TRLYQASTSELYGKVQ +PQ+E TPFYPRSPYGVAKQ++YW++VNYREAYNMFL NGILFNHESPRRGPTFVTRKITRAVARI  G+Q  LYLGNL++ RDWGHARDY+ GMW+MLQ D P D+VL+TGE H VREF EKAF  VG+++EW+GE GS  E+G +K  PEH LV+VDP+Y+RPTEV+LL+GD  KAK  +GW+  V F+ LV EMV++D+   ES
Sbjct:   20 QRAKVALITGITGQDGSYLAELLLSKGYEVHGIIRRSSSFNTGRINHLYKDPHNKGVKFFLHYGDLTDSSNLCGLMAKIQPDEIYNLGAQSHVKVSFDLSEYTAEVDGIGTLRLLNAMRTCGLEKKTRLYQASTSELYGKVQAIPQNEKTPFYPRSPYGVAKQFSYWMIVNYREAYNMFLCNGILFNHESPRRGPTFVTRKITRAVARIKLGVQDCLYLGNLNSIRDWGHARDYVYGMWLMLQQDKPGDYVLSTGEGHTVREFCEKAFARVGIQVEWRGEAGSAEEVGVDKEHPEHVLVRVDPKYYRPTEVDLLIGDCTKAKTELGWKKNVDFEQLVHEMVDSDLKSAES 369

The following BLAST results are available for this feature:

BLAST of NO12G00550 vs. NCBI_GenBank

BLAST of NO12G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
AKP06418.1	1.900e-156	71.82	GDP-D-mannose 4,6-dehydratase [Saccharina japonica...	[more]
CBN80072.1	5.500e-156	74.21	gdp-d-mannose 4,6-dehydratase [Ectocarpus siliculo...	[more]
XP_009041375.1	9.400e-156	73.71	hypothetical protein AURANDRAFT_33270 [Aureococcus...	[more]
XP_009034951.1	9.400e-156	74.06	hypothetical protein AURANDRAFT_23507 [Aureococcus...	[more]
XP_014525236.1	2.100e-155	72.68	GDP-mannose dehydratase [Blastocystis sp. subtype ...	[more]
XP_002290502.1	2.300e-154	74.20	gdp-d-mannose 4,6-dehydratase [Thalassiosira pseud...	[more]
XP_012894519.1	3.000e-154	74.00	uncharacterized protein [Blastocystis hominis] >CB...	[more]
CBN73934.1	3.300e-153	72.78	gdp-d-mannose 4,6-dehydratase [Ectocarpus siliculo...	[more]
AUN86414.1	8.200e-152	68.72	GDP-mannose 4,6-dehydratase 1 [Saccharina japonica...	[more]
OAO16564.1	4.100e-151	72.29	gdp-d-mannose 4,6-dehydratase [Blastocystis sp. AT...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL128	nonsL128	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL124	nonsL124	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR070	ncniR070	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR011	ngnoR011	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR006	ngnoR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009961	NSK009961	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO12G00550.1	NO12G00550.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610282	gene_9967	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100691g3	gene4560	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO12G00550.1	NO12G00550.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO12G00550 ID=NO12G00550|Name=NO12G00550|organism=Nannochloropsis oceanica|type=gene|length=2240bp
ATGGAAAACGAAACCGGTGGCGTTGACACAGCCAACATGAGCATGCCCGA
GGCAGTGTACTCTCCTGATGCGCAGgttagaacacagcgaaactcccttt
ttctccattcatccctccgcccctcttcatgtcccaccgccttccatgca
tgtaactcgccagccgtcctctttgaaaagacaccttgtctgtggcccag
cctacaccccctccctccctccctcaccaccacgcttcttcatacataca
ctcagATCGAGCTGAGCGAGAATGGTGAGCGTCGTAAGGTCGCCCTTTTG
ACGGGTGTGACAGGCCAGGACGGCTCCTACCTGTGTGAGTTCCTTTTGGA
AAAGGGCTACATCGTCCACGGGgtaagtgaagaggacggaggacttggat
ggcttccacccgtttttcgcttgtttgattcaatccccctccctccctca
gGTCATCCGCCGCTCGTCCACGTTCAACACGCACCGCATCGAGCATTTGT
ACAAGGACCGACACGCTGCGGGTGTACGCTTCTTTCTTCATTATGGAGAC
TTGACCGACTCCACCAACCTCACCCAAgtacggcctcccctccctccctc
cctctctcgctctctttcttcttgcctcctgtccttcctgctcatttcca
cacccgccttttcctcgggcgtgatgtgccgtagaaaccccttgccttcc
cagcgtcaccctccctctctccccgtcgtccttcaacctctcaaacacac
tcatcccctccctccctccctccctccctacgcagCTCATCTCCCAGATT
CGCCCCGACGAGATCTACAACCTGGGCGCCATGTCCCACGTCAAGGTGTC
CTTCCAAATGTCCGAGTACACGGCCGATGTCGACGGgtacgtcccttcct
ccctccctccccgtctacgagacacttaccctaccccccttccctctcac
cccagCATCGGCGCCCTCCGCCTCCTCAACGCCGTGCGTGCCTGCGGCCT
CGAAAAAACTACTCGGCTTTATCAAGCGTCCACTTCGGAGCTCTACGGCA
AGGTGCAGGAGGTGCCCCAATCCGAGACTACCCCCTTCTATCCGCGCTCC
CCTTATGGCGTGGCCAAGCAGgtacgcaggaaggaggcttcctctccctc
cttccctcctttcttgtcgtataatcagcccatccaggacggtcatctaa
gagatccctttcctccctccgtcagTACGCGTACTGGATCCTGGTGAACT
ACCGAGAGGCCTACAACATGTTCCTCGTCAACGGCATCCTCTTCAACCAC
GAGTCGCCCCGACGAGGCCCTACCTTTGTCACCCGGAAGATCACGCGTGC
CGTTGCCCGCATCCACAAGGGCCTGCAGAAAACTCTGTACCTTGgtcagt
aggagttgccctccctccctcgtgtccctccttccctctcccatcgtgcg
ttggacgccgtgcaacaatattgacccttccccccctccctccctcctgg
cagGCAACCTGGACGCCCAGCGAGACTGGGGCCACGCCCGTGACTACATC
CGCGGCATGTGGATGATGCTCCAGCACGACACGCCTGACGACTTTGTCCT
GGCCACGGGCGAGTGCCACGCTGTGCGGGAATTTGTCGAAAAGGCCTTCA
ATCACGTCGGgtacgtccctccctccctccccccctcctttcttccgggt
acttggatatattgtccatatcctcggcacatgcctgtatccttctcacc
gtttcctccccccccctacagGATGGAGATCGAGTGGAAGGGGGAGAAAG
GTTCTGTTCATGAAATCGGCTATAACAAGGCCGACCCAGAGgtacgtcct
ccttccctccctcccttcctcctgtccaagctcacagacgtaccccctcg
acacttcacttactcctccttccgtccctccctccagCACGCTCTGGTCA
AGGTTGATCCCCAGTACTTCCGACCCACGGAGGTCGAGCTGCTCCTCGGC
GACCCCGCTAAGGCCAAGAAAGTAATCGGgtacgtccctccctccctccc
tccctcccctcctctctatctacccttcttcccacctcctcccccaaaga
cccttctcatccatccctccctccctccctctcgtccaacgccgcacagG
TGGGAGTGCGAGGTATCGTTTGACGACCTGGTCAAGGAGATGGTGGAGGC
CGACATCGCCCTGGTGGAATCAGGAGATATGACGTCGTAA

protein sequence of NO12G00550.1

>NO12G00550.1-protein ID=NO12G00550.1-protein|Name=NO12G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MENETGGVDTANMSMPEAVYSPDAQIELSENGERRKVALLTGVTGQDGSY
LCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTD
STNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAV
RACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWI
LVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLY
LGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAF
NHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDP
AKAKKVIGWECEVSFDDLVKEMVEADIALVESGDMTS*

Synonyms

Publications