NO12G00550.1, NO12G00550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00550.1
Unique NameNO12G00550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr12:204955..207194 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:204955..207194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00550.1 vs.
Match: AKP06418.1 (GDP-D-mannose 4,6-dehydratase [Saccharina japonica]; AUN86415.1 GDP-mannose 4,6-dehydratase 2 [Saccharina japonica])

HSP 1 Score: 561.6 bits (1446), Expect = 1.900e-156
Identity = 260/362 (71.82%), Postives = 313/362 (86.46%), Query Frame = 0 
Query:   22 PDAQIELSENGERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLYLGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAFNHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDPAKAKKVIGWECEVSFDDLVKEMVEADIALVESG 384
            P+ +     +GE  K A++TG+TGQDGSYL EFLLEKGY VHG+IRRSS+FNT RI+H+Y+DRH + VR  LHYGDLTDSTNL  +I +++PDEIYNLGAMSHVKVSF+MSEYTA+ DG+G LRLLNA+R+ GLEK TRLYQASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+ YW+LVNYREAY M L NGILFNHESPRRGPTFVTRKITRAVARIH+G QKT+YLGNLDA+RDWGHARDYI+GMW+M+Q D P D+VL+TGECH+V+EFVE++F +VGMEI W GE   V E G+ K DPE+ +VKVDP+YFRPTEVELLLGD +KAK  +GW  E++F++LVK+M+++DIA V++G
Sbjct:    4 PEVKKSKVADGETPKKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAEADGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGMEITWAGE--GVEEYGHIKDDPENIVVKVDPRYFRPTEVELLLGDCSKAKAELGWVPEITFEELVKDMMKSDIANVDAG 363
The following BLAST results are available for this feature:
BLAST of NO12G00550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
AKP06418.11.900e-15671.82GDP-D-mannose 4,6-dehydratase [Saccharina japonica... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00550NO12G00550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00550.1NO12G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00550.1.cds1NO12G00550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00550.1.cds2NO12G00550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00550.1.cds3NO12G00550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00550.1.cds4NO12G00550.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00550.1.cds5NO12G00550.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00550.1.cds6NO12G00550.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00550.1.cds7NO12G00550.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00550.1.cds8NO12G00550.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00550.1.cds9NO12G00550.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00550.1.cds10NO12G00550.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00550.1 ID=NO12G00550.1|Name=NO12G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ATGGAAAACGAAACCGGTGGCGTTGACACAGCCAACATGAGCATGCCCGA
GGCAGTGTACTCTCCTGATGCGCAGATCGAGCTGAGCGAGAATGGTGAGC
GTCGTAAGGTCGCCCTTTTGACGGGTGTGACAGGCCAGGACGGCTCCTAC
CTGTGTGAGTTCCTTTTGGAAAAGGGCTACATCGTCCACGGGGTCATCCG
CCGCTCGTCCACGTTCAACACGCACCGCATCGAGCATTTGTACAAGGACC
GACACGCTGCGGGTGTACGCTTCTTTCTTCATTATGGAGACTTGACCGAC
TCCACCAACCTCACCCAACTCATCTCCCAGATTCGCCCCGACGAGATCTA
CAACCTGGGCGCCATGTCCCACGTCAAGGTGTCCTTCCAAATGTCCGAGT
ACACGGCCGATGTCGACGGCATCGGCGCCCTCCGCCTCCTCAACGCCGTG
CGTGCCTGCGGCCTCGAAAAAACTACTCGGCTTTATCAAGCGTCCACTTC
GGAGCTCTACGGCAAGGTGCAGGAGGTGCCCCAATCCGAGACTACCCCCT
TCTATCCGCGCTCCCCTTATGGCGTGGCCAAGCAGTACGCGTACTGGATC
CTGGTGAACTACCGAGAGGCCTACAACATGTTCCTCGTCAACGGCATCCT
CTTCAACCACGAGTCGCCCCGACGAGGCCCTACCTTTGTCACCCGGAAGA
TCACGCGTGCCGTTGCCCGCATCCACAAGGGCCTGCAGAAAACTCTGTAC
CTTGGCAACCTGGACGCCCAGCGAGACTGGGGCCACGCCCGTGACTACAT
CCGCGGCATGTGGATGATGCTCCAGCACGACACGCCTGACGACTTTGTCC
TGGCCACGGGCGAGTGCCACGCTGTGCGGGAATTTGTCGAAAAGGCCTTC
AATCACGTCGGGATGGAGATCGAGTGGAAGGGGGAGAAAGGTTCTGTTCA
TGAAATCGGCTATAACAAGGCCGACCCAGAGCACGCTCTGGTCAAGGTTG
ATCCCCAGTACTTCCGACCCACGGAGGTCGAGCTGCTCCTCGGCGACCCC
GCTAAGGCCAAGAAAGTAATCGGGTGGGAGTGCGAGGTATCGTTTGACGA
CCTGGTCAAGGAGATGGTGGAGGCCGACATCGCCCTGGTGGAATCAGGAG
ATATGACGTCGTAA
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protein sequence of NO12G00550.1

>NO12G00550.1-protein ID=NO12G00550.1-protein|Name=NO12G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MENETGGVDTANMSMPEAVYSPDAQIELSENGERRKVALLTGVTGQDGSY
LCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTD
STNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAV
RACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWI
LVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLY
LGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAF
NHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDP
AKAKKVIGWECEVSFDDLVKEMVEADIALVESGDMTS*
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mRNA from alignment at chr12:204955..207194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00550.1 ID=NO12G00550.1|Name=NO12G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2240bp|location=Sequence derived from alignment at chr12:204955..207194- (Nannochloropsis oceanica)
ATGGAAAACGAAACCGGTGGCGTTGACACAGCCAACATGAGCATGCCCGA
GGCAGTGTACTCTCCTGATGCGCAGGTTAGAACACAGCGAAACTCCCTTT
TTCTCCATTCATCCCTCCGCCCCTCTTCATGTCCCACCGCCTTCCATGCA
TGTAACTCGCCAGCCGTCCTCTTTGAAAAGACACCTTGTCTGTGGCCCAG
CCTACACCCCCTCCCTCCCTCCCTCACCACCACGCTTCTTCATACATACA
CTCAGATCGAGCTGAGCGAGAATGGTGAGCGTCGTAAGGTCGCCCTTTTG
ACGGGTGTGACAGGCCAGGACGGCTCCTACCTGTGTGAGTTCCTTTTGGA
AAAGGGCTACATCGTCCACGGGGTAAGTGAAGAGGACGGAGGACTTGGAT
GGCTTCCACCCGTTTTTCGCTTGTTTGATTCAATCCCCCTCCCTCCCTCA
GGTCATCCGCCGCTCGTCCACGTTCAACACGCACCGCATCGAGCATTTGT
ACAAGGACCGACACGCTGCGGGTGTACGCTTCTTTCTTCATTATGGAGAC
TTGACCGACTCCACCAACCTCACCCAAGTACGGCCTCCCCTCCCTCCCTC
CCTCTCTCGCTCTCTTTCTTCTTGCCTCCTGTCCTTCCTGCTCATTTCCA
CACCCGCCTTTTCCTCGGGCGTGATGTGCCGTAGAAACCCCTTGCCTTCC
CAGCGTCACCCTCCCTCTCTCCCCGTCGTCCTTCAACCTCTCAAACACAC
TCATCCCCTCCCTCCCTCCCTCCCTCCCTACGCAGCTCATCTCCCAGATT
CGCCCCGACGAGATCTACAACCTGGGCGCCATGTCCCACGTCAAGGTGTC
CTTCCAAATGTCCGAGTACACGGCCGATGTCGACGGGTACGTCCCTTCCT
CCCTCCCTCCCCGTCTACGAGACACTTACCCTACCCCCCTTCCCTCTCAC
CCCAGCATCGGCGCCCTCCGCCTCCTCAACGCCGTGCGTGCCTGCGGCCT
CGAAAAAACTACTCGGCTTTATCAAGCGTCCACTTCGGAGCTCTACGGCA
AGGTGCAGGAGGTGCCCCAATCCGAGACTACCCCCTTCTATCCGCGCTCC
CCTTATGGCGTGGCCAAGCAGGTACGCAGGAAGGAGGCTTCCTCTCCCTC
CTTCCCTCCTTTCTTGTCGTATAATCAGCCCATCCAGGACGGTCATCTAA
GAGATCCCTTTCCTCCCTCCGTCAGTACGCGTACTGGATCCTGGTGAACT
ACCGAGAGGCCTACAACATGTTCCTCGTCAACGGCATCCTCTTCAACCAC
GAGTCGCCCCGACGAGGCCCTACCTTTGTCACCCGGAAGATCACGCGTGC
CGTTGCCCGCATCCACAAGGGCCTGCAGAAAACTCTGTACCTTGGTCAGT
AGGAGTTGCCCTCCCTCCCTCGTGTCCCTCCTTCCCTCTCCCATCGTGCG
TTGGACGCCGTGCAACAATATTGACCCTTCCCCCCCTCCCTCCCTCCTGG
CAGGCAACCTGGACGCCCAGCGAGACTGGGGCCACGCCCGTGACTACATC
CGCGGCATGTGGATGATGCTCCAGCACGACACGCCTGACGACTTTGTCCT
GGCCACGGGCGAGTGCCACGCTGTGCGGGAATTTGTCGAAAAGGCCTTCA
ATCACGTCGGGTACGTCCCTCCCTCCCTCCCCCCCTCCTTTCTTCCGGGT
ACTTGGATATATTGTCCATATCCTCGGCACATGCCTGTATCCTTCTCACC
GTTTCCTCCCCCCCCCTACAGGATGGAGATCGAGTGGAAGGGGGAGAAAG
GTTCTGTTCATGAAATCGGCTATAACAAGGCCGACCCAGAGGTACGTCCT
CCTTCCCTCCCTCCCTTCCTCCTGTCCAAGCTCACAGACGTACCCCCTCG
ACACTTCACTTACTCCTCCTTCCGTCCCTCCCTCCAGCACGCTCTGGTCA
AGGTTGATCCCCAGTACTTCCGACCCACGGAGGTCGAGCTGCTCCTCGGC
GACCCCGCTAAGGCCAAGAAAGTAATCGGGTACGTCCCTCCCTCCCTCCC
TCCCTCCCCTCCTCTCTATCTACCCTTCTTCCCACCTCCTCCCCCAAAGA
CCCTTCTCATCCATCCCTCCCTCCCTCCCTCTCGTCCAACGCCGCACAGG
TGGGAGTGCGAGGTATCGTTTGACGACCTGGTCAAGGAGATGGTGGAGGC
CGACATCGCCCTGGTGGAATCAGGAGATATGACGTCGTAA
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Coding sequence (CDS) from alignment at chr12:204955..207194-

>NO12G00550.1 ID=NO12G00550.1|Name=NO12G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr12:204955..207194- (Nannochloropsis oceanica)
ATGGAAAACGAAACCGGTGGCGTTGACACAGCCAACATGAGCATGCCCGA
GGCAGTGTACTCTCCTGATGCGCAGATCGAGCTGAGCGAGAATGGTGAGC
GTCGTAAGGTCGCCCTTTTGACGGGTGTGACAGGCCAGGACGGCTCCTAC
CTGTGTGAGTTCCTTTTGGAAAAGGGCTACATCGTCCACGGGGTCATCCG
CCGCTCGTCCACGTTCAACACGCACCGCATCGAGCATTTGTACAAGGACC
GACACGCTGCGGGTGTACGCTTCTTTCTTCATTATGGAGACTTGACCGAC
TCCACCAACCTCACCCAACTCATCTCCCAGATTCGCCCCGACGAGATCTA
CAACCTGGGCGCCATGTCCCACGTCAAGGTGTCCTTCCAAATGTCCGAGT
ACACGGCCGATGTCGACGGCATCGGCGCCCTCCGCCTCCTCAACGCCGTG
CGTGCCTGCGGCCTCGAAAAAACTACTCGGCTTTATCAAGCGTCCACTTC
GGAGCTCTACGGCAAGGTGCAGGAGGTGCCCCAATCCGAGACTACCCCCT
TCTATCCGCGCTCCCCTTATGGCGTGGCCAAGCAGTACGCGTACTGGATC
CTGGTGAACTACCGAGAGGCCTACAACATGTTCCTCGTCAACGGCATCCT
CTTCAACCACGAGTCGCCCCGACGAGGCCCTACCTTTGTCACCCGGAAGA
TCACGCGTGCCGTTGCCCGCATCCACAAGGGCCTGCAGAAAACTCTGTAC
CTTGGCAACCTGGACGCCCAGCGAGACTGGGGCCACGCCCGTGACTACAT
CCGCGGCATGTGGATGATGCTCCAGCACGACACGCCTGACGACTTTGTCC
TGGCCACGGGCGAGTGCCACGCTGTGCGGGAATTTGTCGAAAAGGCCTTC
AATCACGTCGGGATGGAGATCGAGTGGAAGGGGGAGAAAGGTTCTGTTCA
TGAAATCGGCTATAACAAGGCCGACCCAGAGCACGCTCTGGTCAAGGTTG
ATCCCCAGTACTTCCGACCCACGGAGGTCGAGCTGCTCCTCGGCGACCCC
GCTAAGGCCAAGAAAGTAATCGGGTGGGAGTGCGAGGTATCGTTTGACGA
CCTGGTCAAGGAGATGGTGGAGGCCGACATCGCCCTGGTGGAATCAGGAG
ATATGACGTCGTAA
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Synonyms
Publications