jgi.p|Nanoce1779_2|610282, gene_9967 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610282
Unique Namegene_9967
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_49:47385..50403 -

Link to JBrowse

Properties
Property NameValue
TranscriptId610368
ProteinId610282
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:47385..50403 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0008446GDP-mannose 4,6-dehydratase activity
GO:0003824catalytic activity
GO:0050662coenzyme binding
Vocabulary: Biological Process
TermDefinition
GO:0019673GDP-mannose metabolic process
GO:0044237cellular metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL070ncniL070Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00550NO12G00550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610282mRNA_9967-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610282mRNA_9967Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|610282

>mRNA_9967-protein ID=mRNA_9967-protein|Name=jgi.p|Nanoce1779_2|610282|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MENETGGVDTANMSMPEAVYSPDAQIELSENGERRKVALLTGVTGQDGSY
LCEFLLEKGYIVHGVIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTD
STNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAV
RACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWI
LVNYREAYNMFLVNGILFNHESPRRGPTFVTRKITRAVARIHKGLQKTLY
LGNLDAQRDWGHARDYIRGMWMMLQHDTPDDFVLATGECHAVREFVEKAF
NHVGMEIEWKGEKGSVHEIGYNKADPEHALVKVDPQYFRPTEVELLLGDP
AKAKKVIGWECEVSFDDLVKEMVEADIALVESGDMTS*
back to top
Synonyms
Publications