NO11G02920, NO11G02920 (gene) Nannochloropsis oceanica

Overview
NameNO11G02920
Unique NameNO11G02920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1409
Alignment locationchr11:917816..919224 -

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Properties
Property NameValue
DescriptionLight-harvesting protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:917816..919224 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0009579thylakoid
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
GO:0015979photosynthesis
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
[Close]
BLAST of NO11G02920 vs. NCBI_GenBank
Match: EWM24914.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 339.3 bits (869), Expect = 7.900e-90
Identity = 170/200 (85.00%), Postives = 186/200 (93.00%), Query Frame = 0 
Query:    1 MKVTAVLSLLAAPLLASAFIAPAPKATRARGVMSMAQSKALPFLKAPAKLDGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVHLPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTADKPWDLGFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLFS 201
            MK  ++LSLLAAPLLASAF+APAPK TRARGV+SM QSKALPFL AP KLDGSL GDFGFDPMGISDQVANLKYVRAAELKH RVAMLGFLGWVV Q+VHLPGEIYAESNPLKA+ +VPL+S +QIFLFI AIELATLD+TYTADKPWDLGFDP+N SKGKSEQQMKDLE+KELKNGR+AMIAI+GL+AQT YTG+PLFS
Sbjct:    1 MKFASLLSLLAAPLLASAFLAPAPKTTRARGVVSMVQSKALPFLAAPKKLDGSLVGDFGFDPMGISDQVANLKYVRAAELKHGRVAMLGFLGWVVTQFVHLPGEIYAESNPLKAIAAVPLISHVQIFLFIAAIELATLDRTYTADKPWDLGFDPMNMSKGKSEQQMKDLELKELKNGRLAMIAIIGLMAQTAYTGIPLFS 200
[Close]
BLAST of NO11G02920 vs. NCBI_GenBank
Match: XP_009041060.1 (putative plastid light harvesting protein isoform 10 [Aureococcus anophagefferens] >EGB04207.1 putative plastid light harvesting protein isoform 10 [Aureococcus anophagefferens])

HSP 1 Score: 172.9 bits (437), Expect = 9.800e-40
Identity = 99/211 (46.92%), Postives = 131/211 (62.09%), Query Frame = 0 
Query:    5 AVLSLLAAPLLASAFIAPAPKATRARGVMSMAQSKALPFLKAPAKLD---------------GSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVHLPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTADKPWDLGFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLFS 201
            A++SLLA  L A+   AP     RA  + +   S+A PFL  P KLD               G++ GD GFDP+ +++   +L Y R AE+KH R+AML  +G++VQ+YVHLPGE Y  S PLKA  +VP  +  QI L  G +ELAT D+TY  D PWDLGFDPL F +GKS+ ++ DL +KEL NGR+AM+A +G+  QTL    PL S
Sbjct:    5 ALVSLLA--LKAATGFAPTKPMKRAFSLFA-ENSEAFPFLNRPEKLDGLSVSFMSTRTLILVGTMIGDVGFDPLRLAEVQVDLSYARGAEIKHGRIAMLATVGFLVQEYVHLPGEAYQNSQPLKAPWTVPWAANFQILLLAGCVELATADKTY-GDTPWDLGFDPLCFQEGKSQAELDDLALKELTNGRLAMMAFVGMTVQTLLFDKPLLS 211
[Close]
BLAST of NO11G02920 vs. NCBI_GenBank
Match: XP_009033850.1 (putative plastid light harvesting protein isoform 8 [Aureococcus anophagefferens] >EGB11488.1 putative plastid light harvesting protein isoform 8 [Aureococcus anophagefferens])

HSP 1 Score: 165.2 bits (417), Expect = 2.000e-37
Identity = 79/149 (53.02%), Postives = 106/149 (71.14%), Query Frame = 0 
Query:   52 GSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVHLPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTADKPWDLGFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLFS 201
            G++ GD GFDP+ +++   +L Y R AE+KH R+AML  +G++VQ+YVHLPGE Y  S PLKA  +VP  + +QI L  G +ELAT D+TY  D PWDLGFDPL F +GKS+ ++ DL +KEL NGR+AM+A +G+  QTL    PL S
Sbjct:   31 GTMIGDVGFDPLRLAEVQVDLSYARGAEIKHGRIAMLATVGFLVQEYVHLPGEAYQNSQPLKAPWTVPWAANLQILLLAGCVELATADKTY-GDTPWDLGFDPLCFQEGKSQAELDDLALKELTNGRLAMMAFVGMTIQTLLFDKPLLS 178
[Close]
BLAST of NO11G02920 vs. NCBI_GenBank
Match: XP_005707805.1 (light-harvesting complex protein [Galdieria sulphuraria] >EME31285.1 light-harvesting complex protein [Galdieria sulphuraria])

HSP 1 Score: 164.1 bits (414), Expect = 4.500e-37
Identity = 82/160 (51.25%), Postives = 114/160 (71.25%), Query Frame = 0 
Query:   37 QSKALPFLKAPAKLDGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVHLPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTADK-PWDLGFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTG 196
            +S+ALPFL+AP KLDG + GD GFDP+ ISD + NL Y+RA+E+KHCRVAML  LG++ Q++ HLPG+++ E + L A+  VP+   IQI LFI  +E+AT   T++ D+ P D GFDPL  +  KS Q  +  +  E++NGR+AMIA++G I Q L TG
Sbjct:   40 KSRALPFLEAPKKLDGKIPGDAGFDPLYISDNM-NLDYLRASEIKHCRVAMLAALGYITQEFFHLPGDVFNEKHALAAIHKVPIEGWIQIILFISLVEIATFRTTFSFDREPGDFGFDPLGLA--KSPQLRRRYQESEIRNGRLAMIAVIGFIVQELVTG 196
[Close]
BLAST of NO11G02920 vs. NCBI_GenBank
Match: XP_005710084.1 (Light-harvesting complex I polypeptide [Chondrus crispus] >CDF39790.1 Light-harvesting complex I polypeptide [Chondrus crispus])

HSP 1 Score: 161.8 bits (408), Expect = 2.300e-36
Identity = 90/185 (48.65%), Postives = 129/185 (69.73%), Query Frame = 0 
Query:   16 ASAFIAPAPKATRARGVMSMAQSKALPFLKAPAKLDGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVHLPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTADKPWDLGFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLFS 201
            A+A  AP   +T AR  ++M  S+A+PFL+AP+KLDGS  GD GFDP+ +SD + +  Y  A ELK+ RVAML  +G +VQ++VHLP  ++AE+NP+KA+ +VP+   +QI + I  IELAT  +TY +    DLGFDPL      S+  M++L++KELKNGR+AM+A +G I QT+ TG P+ +
Sbjct:   17 AAALSAP---STSARPAVTMVASRAIPFLEAPSKLDGSRIGDSGFDPLYLSDYL-DQDYAAAGELKNGRVAMLATVGMLVQEFVHLPNPMFAEANPIKAIYAVPVEGWVQILVAITIIELATFKKTYESGA--DLGFDPLGMG---SKGNMEELKLKELKNGRLAMLASIGFIFQTITTGKPIIA 192
[Close]
BLAST of NO11G02920 vs. NCBI_GenBank
Match: CEL97783.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 149.8 bits (377), Expect = 8.900e-33
Identity = 86/172 (50.00%), Postives = 117/172 (68.02%), Query Frame = 0 
Query:   26 ATRARGVMSMAQSKALPFLKAPAKLDGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQY-VHLPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQ----TYTADKPWDLGFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTL 193
            A R+   M    S++LPFL  P+KLD S+AGD GFDP  +SDQ+ NL+++RAAELK+ RVAML  +GW+V    +HLPG  +      +A++  PL   +QI    G +ELA LD+     Y  ++  + GFDPLNFSKGKS+ QM DL +KE+KNGR+AMIAI+GL+ Q+L
Sbjct:   37 APRSDVRMQAEMSQSLPFLMRPSKLDKSMAGDVGFDPFLLSDQL-NLEWMRAAELKNGRVAMLAVVGWLVTALGIHLPGRDFV---GFEAVSKNPLAVHLQIIAACGMVELANLDKDFGGNYVNNEIGNYGFDPLNFSKGKSQAQMDDLRLKEVKNGRLAMIAIIGLMVQSL 204
[Close]
BLAST of NO11G02920 vs. NCBI_GenBank
Match: CBN74719.1 (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 149.4 bits (376), Expect = 1.200e-32
Identity = 87/199 (43.72%), Postives = 134/199 (67.34%), Query Frame = 0 
Query:    7 LSLLAAPLLASAFIAPAPKATRARGVMSMAQSKALPFLKAPAKLDGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVHLPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTAD--KPWDLGF-DPLN---FSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLF 200
            L+    P ++S     AP    A   +  A+SKALPFL++PA LDGS+ GDFGFDP+G+++ + ++ + RAAE+KH RVAML  +G+++ QYVHLPG+ + ++ PL+ALT+VP  +Q Q+F FIG  E+A + QTY+ D   PW++   DP+    F K KSE++ + L++ E+K+ R+AM+AI+G + Q +    P F
Sbjct:   16 LAFAPVPKVSSLGAKSAPARNSAATALD-AKSKALPFLESPATLDGSMIGDFGFDPLGLTENI-DIPFARAAEIKHGRVAMLAVVGFLLTQYVHLPGDQF-QAGPLEALTTVPAGAQAQVFTFIGTFEMAAILQTYSEDTTDPWEILLKDPMGADLFYK-KSEKEQERLKLSEVKHARLAMLAIIGELTQMMMFHKPSF 210
[Close]
BLAST of NO11G02920 vs. NCBI_GenBank
Match: AAN39005.1 (light-harvesting complex I polypeptide, partial [Griffithsia japonica])

HSP 1 Score: 145.6 bits (366), Expect = 1.700e-31
Identity = 76/166 (45.78%), Postives = 111/166 (66.87%), Query Frame = 0 
Query:   35 MAQSKALPFLKAPAKLDGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVHLPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTADKPWDLGFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLFS 201
            MA S+++PFL+ P+KLDG+  GD GFDP+ +SD + +L Y  AAE+KH R+ ML  LG +VQ+ VHLP   ++E NPLKA+ +VP+   +QI   I  +ELA+   TY      DLGFDP+      +  ++++L++KE+KNGR+A+IA  G I Q L TG P+ +
Sbjct:    3 MAASESVPFLEKPSKLDGTRVGDTGFDPLYLSDYI-DLDYAAAAEIKHGRICMLATLGMLVQEVVHLPNAAFSEPNPLKAIYAVPIEGWVQIITVICLVELASFKATYETGA--DLGFDPMGLG---TPDKIEELKLKEVKNGRLAIIACTGFIFQILVTGKPILA 162
[Close]
BLAST of NO11G02920 vs. NCBI_GenBank
Match: XP_005853464.1 (light-harvesting protein [Nannochloropsis gaditana CCMP526] >EKU22896.1 light-harvesting protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 145.6 bits (366), Expect = 1.700e-31
Identity = 88/202 (43.56%), Postives = 126/202 (62.38%), Query Frame = 0 
Query:    1 MKVTAVLSLLAAPLLASAFIAPAPKATRARGVMSM--AQSKALPFLKAPAKLDGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVHLPGEIYAESNPLKALTSVP--LLSQIQIFLFIG-AIELATLDQTY--TADKPWDLGFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTG 196
            MK+ +   L+ A   A+AF+ P P  TRARG +SM   +SK++PFL  P  LDG+  GD GFDP+G +  +  L Y++ AE+KHCR+AML  LGW+V  +VHLPG+++A S+      +V    L+QI I+  I  AI +  + Q    +  +P D  FDPL F+  K EQ +K L++ ELKNGR+AM+A  G++ Q   TG
Sbjct:    1 MKLLSFACLIGA---AAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLP-LAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFA--KDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTG 196
[Close]
BLAST of NO11G02920 vs. NCBI_GenBank
Match: XP_005706265.1 (light-harvesting complex protein [Galdieria sulphuraria] >EME29745.1 light-harvesting complex protein [Galdieria sulphuraria])

HSP 1 Score: 145.6 bits (366), Expect = 1.700e-31
Identity = 77/170 (45.29%), Postives = 111/170 (65.29%), Query Frame = 0 
Query:   32 VMSMAQSKALPFLKAPAKLDGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVHLPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQ-TYTADK-PWDLGFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLF 200
            + +   SKA+PF   PA+LD S+ G  GFDP+G SD+  ++K+++ AE+KHCR+ ML  LGWVV ++ HLP E+++ ++PL AL  VP L  IQI L + A+E  +LD+ T+  +K P D GFDPL   KG +++ M   +  ELKNGR+AMIA+     Q L T   +F
Sbjct:   38 IETQRMSKAIPFFPKPARLDESMPGYAGFDPLGFSDKF-DVKFLQEAEIKHCRICMLAALGWVVPEFWHLPSEVFSNTSPLAALGQVPKLGLIQILLLVLALEAISLDKITFHPEKEPGDFGFDPLGLGKGNAKKWM---QTAELKNGRLAMIAMGAFFHQNLLTNQGIF 203
The following BLAST results are available for this feature:
BLAST of NO11G02920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24914.17.900e-9085.00light-harvesting protein [Nannochloropsis gaditana... [more]
XP_009041060.19.800e-4046.92putative plastid light harvesting protein isoform ... [more]
XP_009033850.12.000e-3753.02putative plastid light harvesting protein isoform ... [more]
XP_005707805.14.500e-3751.25light-harvesting complex protein [Galdieria sulphu... [more]
XP_005710084.12.300e-3648.65Light-harvesting complex I polypeptide [Chondrus c... [more]
CEL97783.18.900e-3350.00unnamed protein product [Vitrella brassicaformis C... [more]
CBN74719.11.200e-3243.72Light harvesting complex protein [Ectocarpus silic... [more]
AAN39005.11.700e-3145.78light-harvesting complex I polypeptide, partial [G... [more]
XP_005853464.11.700e-3143.56light-harvesting protein [Nannochloropsis gaditana... [more]
XP_005706265.11.700e-3145.29light-harvesting complex protein [Galdieria sulphu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL113nonsL113Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR022ngnoR022Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001955NSK001955Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02920.1NO11G02920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591694gene_5192Nannochloropsis oceanica (N. oceanica CCMP1779)gene
LHC10gene5581Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02920.1NO11G02920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02920 ID=NO11G02920|Name=NO11G02920|organism=Nannochloropsis oceanica|type=gene|length=1409bp
ATGAAAGTCACCGCCGTGCTCTCTTTGCTCGCCGCCCCTCTTCTGGCATC
CGCGTTTATTGCTCCGGCCCCCAAGgtacgcgtacaagctagccacttgc
cagatttgattcgcatgcttcagaatatgtccggagggcttcaatatagg
ctgtctttcgtaagaaaccttttcacgccggcataagtatatgatgaaag
acttcccttcgtctgccgatctcggacttgctgtcgtcgtcctaacttct
tttccttttttgttccacgcacagGCCACCCGCGCCCGCGGCGTGATGTC
GATGGCGCAGTCGAAGGCCCTTCCTTTCCTCAAGGCTCCCGCGAAGCTGG
ATGGAAGCCTTGCAGGAGACTTTGGTTTCGACCCCATGGGAATTTCGGAC
CAGgtaggcgaagattttggtaggagccagggaggaaaggcggtaggaag
ggagggcgcggaccgagaccagtgggtcactggtgagagtgtttccaagc
cgtttggttttgcgagagcaagtatagtcaattaaaacttatccttatcc
tctcttggtcgtccctccttactcccagGTCGCCAACCTCAAATACGTCC
GTGCGGCGGAGCTCAAGCACTGCCGCGTGGCGATGCTTGGGTTCCTTGGC
TGGGTTGTGCAGCAATATGTCCACCTTCCCGGAGAGATCTACGCAGAGAG
CAACCCTCTTAAGGCCCTGACCAGCGTGCCCCTCTTAAGCCAGATTCAGA
TCTTCCTGTTCATCGGCGCGATTGAGCTGGCGACATTAGACCAGACCTAC
ACGGCGGACAAGCCGTGGGATTTGGGCTTTGACCCGCTTAACTTTAGCAA
Ggtgagttagtgagtcagcaagcaagtgcattagtgtgtacgcaagagtg
tgagagtgtgtgcgtgagtgagagagaatgtgtgcatatgaaggtatttt
tgtcttgagctggaaaaggcatatcataattgtgatccccctccacgttt
cacaaagtttacggctttctctttctggtcgtttctgaatccctgcagta
tcggccttccttatgctcatggtcctcctgcctttcctccaattcaacct
acagGGCAAGTCCGAGCAGCAGATGAAGGATTTGGAAGTGAAGGAGCTCA
AAAACGGACGCGTTGCCATGgtaggtaattccttcttttctctcctcatt
cagtcctgagtcttcgaagaagaatttctatatcagttttactctatttt
tatttttttaacctcaaatgattttccttcctggcgaggctcaataatcg
tttccctccctccttccctcccgcactccctccatccctccctccccagA
TCGCCATCATGGGTTTGATTGCCCAGACCCTTTACACCGGTGTTCCCCTT
TTCTCTTAA
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protein sequence of NO11G02920.1

>NO11G02920.1-protein ID=NO11G02920.1-protein|Name=NO11G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MKVTAVLSLLAAPLLASAFIAPAPKATRARGVMSMAQSKALPFLKAPAKL
DGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVH
LPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTADKPWDL
GFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLFS
*
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Synonyms
Publications