NO11G02920.1, NO11G02920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02920.1
Unique NameNO11G02920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr11:917816..919224 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:917816..919224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G02920.1 vs.
Match: EWM24914.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 339.3 bits (869), Expect = 7.900e-90
Identity = 170/200 (85.00%), Postives = 186/200 (93.00%), Query Frame = 0 
Query:    1 MKVTAVLSLLAAPLLASAFIAPAPKATRARGVMSMAQSKALPFLKAPAKLDGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVHLPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTADKPWDLGFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLFS 201
            MK  ++LSLLAAPLLASAF+APAPK TRARGV+SM QSKALPFL AP KLDGSL GDFGFDPMGISDQVANLKYVRAAELKH RVAMLGFLGWVV Q+VHLPGEIYAESNPLKA+ +VPL+S +QIFLFI AIELATLD+TYTADKPWDLGFDP+N SKGKSEQQMKDLE+KELKNGR+AMIAI+GL+AQT YTG+PLFS
Sbjct:    1 MKFASLLSLLAAPLLASAFLAPAPKTTRARGVVSMVQSKALPFLAAPKKLDGSLVGDFGFDPMGISDQVANLKYVRAAELKHGRVAMLGFLGWVVTQFVHLPGEIYAESNPLKAIAAVPLISHVQIFLFIAAIELATLDRTYTADKPWDLGFDPMNMSKGKSEQQMKDLELKELKNGRLAMIAIIGLMAQTAYTGIPLFS 200
The following BLAST results are available for this feature:
BLAST of NO11G02920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24914.17.900e-9085.00light-harvesting protein [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02920NO11G02920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02920.1NO11G02920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02920.1.cds1NO11G02920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02920.1.cds2NO11G02920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02920.1.cds3NO11G02920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02920.1.cds4NO11G02920.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02920.1.cds5NO11G02920.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02920.1 ID=NO11G02920.1|Name=NO11G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
ATGAAAGTCACCGCCGTGCTCTCTTTGCTCGCCGCCCCTCTTCTGGCATC
CGCGTTTATTGCTCCGGCCCCCAAGGCCACCCGCGCCCGCGGCGTGATGT
CGATGGCGCAGTCGAAGGCCCTTCCTTTCCTCAAGGCTCCCGCGAAGCTG
GATGGAAGCCTTGCAGGAGACTTTGGTTTCGACCCCATGGGAATTTCGGA
CCAGGTCGCCAACCTCAAATACGTCCGTGCGGCGGAGCTCAAGCACTGCC
GCGTGGCGATGCTTGGGTTCCTTGGCTGGGTTGTGCAGCAATATGTCCAC
CTTCCCGGAGAGATCTACGCAGAGAGCAACCCTCTTAAGGCCCTGACCAG
CGTGCCCCTCTTAAGCCAGATTCAGATCTTCCTGTTCATCGGCGCGATTG
AGCTGGCGACATTAGACCAGACCTACACGGCGGACAAGCCGTGGGATTTG
GGCTTTGACCCGCTTAACTTTAGCAAGGGCAAGTCCGAGCAGCAGATGAA
GGATTTGGAAGTGAAGGAGCTCAAAAACGGACGCGTTGCCATGATCGCCA
TCATGGGTTTGATTGCCCAGACCCTTTACACCGGTGTTCCCCTTTTCTCT
TAA
back to top

protein sequence of NO11G02920.1

>NO11G02920.1-protein ID=NO11G02920.1-protein|Name=NO11G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MKVTAVLSLLAAPLLASAFIAPAPKATRARGVMSMAQSKALPFLKAPAKL
DGSLAGDFGFDPMGISDQVANLKYVRAAELKHCRVAMLGFLGWVVQQYVH
LPGEIYAESNPLKALTSVPLLSQIQIFLFIGAIELATLDQTYTADKPWDL
GFDPLNFSKGKSEQQMKDLEVKELKNGRVAMIAIMGLIAQTLYTGVPLFS
*
back to top

mRNA from alignment at chr11:917816..919224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02920.1 ID=NO11G02920.1|Name=NO11G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp|location=Sequence derived from alignment at chr11:917816..919224- (Nannochloropsis oceanica)
ATGAAAGTCACCGCCGTGCTCTCTTTGCTCGCCGCCCCTCTTCTGGCATC
CGCGTTTATTGCTCCGGCCCCCAAGGTACGCGTACAAGCTAGCCACTTGC
CAGATTTGATTCGCATGCTTCAGAATATGTCCGGAGGGCTTCAATATAGG
CTGTCTTTCGTAAGAAACCTTTTCACGCCGGCATAAGTATATGATGAAAG
ACTTCCCTTCGTCTGCCGATCTCGGACTTGCTGTCGTCGTCCTAACTTCT
TTTCCTTTTTTGTTCCACGCACAGGCCACCCGCGCCCGCGGCGTGATGTC
GATGGCGCAGTCGAAGGCCCTTCCTTTCCTCAAGGCTCCCGCGAAGCTGG
ATGGAAGCCTTGCAGGAGACTTTGGTTTCGACCCCATGGGAATTTCGGAC
CAGGTAGGCGAAGATTTTGGTAGGAGCCAGGGAGGAAAGGCGGTAGGAAG
GGAGGGCGCGGACCGAGACCAGTGGGTCACTGGTGAGAGTGTTTCCAAGC
CGTTTGGTTTTGCGAGAGCAAGTATAGTCAATTAAAACTTATCCTTATCC
TCTCTTGGTCGTCCCTCCTTACTCCCAGGTCGCCAACCTCAAATACGTCC
GTGCGGCGGAGCTCAAGCACTGCCGCGTGGCGATGCTTGGGTTCCTTGGC
TGGGTTGTGCAGCAATATGTCCACCTTCCCGGAGAGATCTACGCAGAGAG
CAACCCTCTTAAGGCCCTGACCAGCGTGCCCCTCTTAAGCCAGATTCAGA
TCTTCCTGTTCATCGGCGCGATTGAGCTGGCGACATTAGACCAGACCTAC
ACGGCGGACAAGCCGTGGGATTTGGGCTTTGACCCGCTTAACTTTAGCAA
GGTGAGTTAGTGAGTCAGCAAGCAAGTGCATTAGTGTGTACGCAAGAGTG
TGAGAGTGTGTGCGTGAGTGAGAGAGAATGTGTGCATATGAAGGTATTTT
TGTCTTGAGCTGGAAAAGGCATATCATAATTGTGATCCCCCTCCACGTTT
CACAAAGTTTACGGCTTTCTCTTTCTGGTCGTTTCTGAATCCCTGCAGTA
TCGGCCTTCCTTATGCTCATGGTCCTCCTGCCTTTCCTCCAATTCAACCT
ACAGGGCAAGTCCGAGCAGCAGATGAAGGATTTGGAAGTGAAGGAGCTCA
AAAACGGACGCGTTGCCATGGTAGGTAATTCCTTCTTTTCTCTCCTCATT
CAGTCCTGAGTCTTCGAAGAAGAATTTCTATATCAGTTTTACTCTATTTT
TATTTTTTTAACCTCAAATGATTTTCCTTCCTGGCGAGGCTCAATAATCG
TTTCCCTCCCTCCTTCCCTCCCGCACTCCCTCCATCCCTCCCTCCCCAGA
TCGCCATCATGGGTTTGATTGCCCAGACCCTTTACACCGGTGTTCCCCTT
TTCTCTTAA
back to top

Coding sequence (CDS) from alignment at chr11:917816..919224-

>NO11G02920.1 ID=NO11G02920.1|Name=NO11G02920.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr11:917816..919224- (Nannochloropsis oceanica)
ATGAAAGTCACCGCCGTGCTCTCTTTGCTCGCCGCCCCTCTTCTGGCATC
CGCGTTTATTGCTCCGGCCCCCAAGGCCACCCGCGCCCGCGGCGTGATGT
CGATGGCGCAGTCGAAGGCCCTTCCTTTCCTCAAGGCTCCCGCGAAGCTG
GATGGAAGCCTTGCAGGAGACTTTGGTTTCGACCCCATGGGAATTTCGGA
CCAGGTCGCCAACCTCAAATACGTCCGTGCGGCGGAGCTCAAGCACTGCC
GCGTGGCGATGCTTGGGTTCCTTGGCTGGGTTGTGCAGCAATATGTCCAC
CTTCCCGGAGAGATCTACGCAGAGAGCAACCCTCTTAAGGCCCTGACCAG
CGTGCCCCTCTTAAGCCAGATTCAGATCTTCCTGTTCATCGGCGCGATTG
AGCTGGCGACATTAGACCAGACCTACACGGCGGACAAGCCGTGGGATTTG
GGCTTTGACCCGCTTAACTTTAGCAAGGGCAAGTCCGAGCAGCAGATGAA
GGATTTGGAAGTGAAGGAGCTCAAAAACGGACGCGTTGCCATGATCGCCA
TCATGGGTTTGATTGCCCAGACCCTTTACACCGGTGTTCCCCTTTTCTCT
TAA
back to top
Synonyms
Publications