LHC10, gene5581 (gene) Nannochloropsis gaditana

Overview
NameLHC10
Unique Namegene5581
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:823323..825709 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100092g17
Gene biotypeprotein_coding
GeneLHC10
GbkeyGene
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:823323..825709 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
PXD0084992019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
GO:0016020membrane
GO:0009579thylakoid
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0006091generation of precursor metabolites and energy
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL022ngnoL022Nannochloropsis gaditana (N. gaditana B-31)syntenic_region
ngnoL018ngnoL018Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02920NO11G02920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna5777rna5777-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna5777rna5777Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna5777

>rna5777-protein ID=rna5777-protein|Name=rna5777|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MKFASLLSLLAAPLLASAFLAPAPKTTRARGVVSMVQSKALPFLAAPKKL
DGSLVGDFGFDPMGISDQVANLKYVRAAELKHGRVAMLGFLGWVVTQFVH
LPGEIYAESNPLKAIAAVPLISHVQIFLFIAAIELATLDRTYTADKPWDL
GFDPMNMSKGKSEQQMKDLELKELKNGRLAMIAIIGLMAQTAYTGIPLFS
back to top
Synonyms
Publications