rna5777, rna5777 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5777
Unique Name	rna5777
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	783
Alignment location	CM002466.1:823323..825709 +

Link to JBrowse

Properties


Property Name	Value
Product	light-harvesting protein
Orig transcript id	gnl\|cribi\|Naga_100092g17.2137.mrna
Orig protein id	gnl\|cribi\|Naga_100092g17.2137
Gene	LHC10
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:823323..825709 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
LHC10	gene5581	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5777	rna5777-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24914.1	cds5762	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:823323..825709+
coding sequence from alignment at CM002466.1:823323..825709+

mRNA sequence

>rna5777 ID=rna5777|Name=rna5777|organism=Nannochloropsis gaditana|type=mRNA|length=783bp
ATGCAGGACAAGGAGCATTATCCGCCCAAAATCCTCCAGGACCCTGCCTT
GAAGGCCCTTACCCAGCAAAACCCCCTGTGTGCCGACTGCGAGGCTCCCC
ACCCGGATTGGGTCTCCTTGAATCTAGGGGTGGTCGTGTGCTTGCAGTGT
TCAGGAGTGCACCGGTCTCTGGGCGTGCACGTGAGTAAAATCCGGAGCTT
GGCACTGGACGACGTGGATCCCGTGGACCTGGCCCTTGTCTCTCGGCTGG
GCAATACCCGAGTCAACAAGGTATATGAATACCAGTTCCCGGACGGATGG
CGAAAGCCACGGCCGCACGAGGATCGAAGCGCTCGGGCCCAGTACATCAA
GGCGAAATACGTCTGGAAAGGGTTCACGTGCATCGTGTCTGATGGCGTTG
GGAGCGCAGCGGGCGAAAACAATGGAGGCAGATCAGAAATAGCAGAAGCT
ATAGATTTAGGAGTCGCGGGAAAGGCAAAAGACGACAAACTCGGTAATTC
CCTGATGTTGGTTAAAGCTGTGATGGAGAACAATTTGGAAGGCGCCCTTG
AGGCCCTGGTGCAAGGCGCAGACGTGGACTGGACGGGTGGAACCGAGAAC
GAGAAGGGACGGACCCCCCTGCATCTGGCGGCCCGTCAAGGGGACGAAGT
CGTGGAAGCGGTGGCTTTCCTGGTGCAAAATGGCGCGAATGTGGGACTGC
GGGATCGCGATGATCTGACCGCATTGGATTTGGCCACTCAAGGCCACCAC
GCTCTAACTGTTCAGTATTTGCTGAAATTTTGA

protein sequence of rna5777

>rna5777-protein ID=rna5777-protein|Name=rna5777|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MKFASLLSLLAAPLLASAFLAPAPKTTRARGVVSMVQSKALPFLAAPKKL
DGSLVGDFGFDPMGISDQVANLKYVRAAELKHGRVAMLGFLGWVVTQFVH
LPGEIYAESNPLKAIAAVPLISHVQIFLFIAAIELATLDRTYTADKPWDL
GFDPMNMSKGKSEQQMKDLELKELKNGRLAMIAIIGLMAQTAYTGIPLFS

mRNA from alignment at CM002466.1:823323..825709+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5777 ID=rna5777|Name=rna5777|organism=Nannochloropsis gaditana|type=mRNA|length=2387bp|location=Sequence derived from alignment at CM002466.1:823323..825709+ (Nannochloropsis gaditana)
GCCGGTTTCCGTATCGGTAGCCTGGTGCAATTTCTTCGCCGTAGAAGTTG
ATATTGTCTCTTGGAAGGATACGTCGAATTGCTGCGGATCCCACGGTAAA
CAGATCCGCAAGCAGGGGGCGAATTTGTGTCCCAGGCAGTAATCCCATCT
CTCcttgaggaaagaaagaagcagcTTGCCGTGCTAAGCTTTGATCGAAG
GCTTACCAAAGGGcatcttttttttaaagggATGTTTTTTTCTTCGAGAA
GTCTTGCCTTCCTGCTCTGGGTGTACACGTACTCACAGGCATCTATTGCT
CGGTTCAGCATGCGTTCTTAAGAATAGTTCTTGTAGGCTGCGGGAAATAA
AGCCTTCCGTCCTGtgtccctgtccttctcacTGTCCCCTTTTCACTTTT
TTCAGCGCTTTCGATTAAAATGAAgttcgcctccctcctgtctttgcTTG
cggcccccctcctggcctctgCTTTCCTTGCTCCGGCCCCCAAGGTAAGT
CCGTACGACAAGCAGAGCTGGCCAGGCCCTGGTTGCAAAGCTCCGACCTG
GATGGCGGAGTTTTCTCTTCAAGCTTCTAAGCCCTATCCTTTTTCCTGGG
TATTGCCATATCCTTCCTCTTACGTCCAGACTACTCGCGCCCGCGGTGTG
GTCTCCATGGTCCAATCCAAAGCTCTGCCTTTCTTGGCTGCCCCGAAGAA
GCTAGATGGTTCCCTGGTCGGCGACTTTGGCTTCGACCCCATGGGGATCT
CGGATCAGGTAAGCTTGTTGCCGTCCAGGAGTGTAGACTAAGCAAAGGCG
ATCaattgaagagggagaggccccCTGAACGAGGGAGACGGTCCTTCGAC
CCGTCCTGGCCCTCGTCTCGCCTGGTCACCGCCCCCTTGGCttcatattt
tttttcctctccccactTAGGTGGCAAATTTGAAGTACGTACGCGCGGCC
GAGCTTAAACACGGGCGGGTGGCCATGCTTGGTTTCCTAGGCTGGGTCGT
GACGCAAttcgtccacctcccgggGGAGATCTACGCGGAATCCAACCCGC
TGAAGGCGATCGCCGCCGTGCCCCTCATCAGCCACGTGCAAATCTTTCTC
TTCATCGCTGCCATCGAGCTGGCGACCCTGGATAGGACGTACACGGCGGA
CAAGCCTTGGGACCTGGGCTTCGACCCCATGAACATGAGCAAGGTGAGGA
GTcgagacggggggggaaggagaagcaccGCAACGCGACAATAAAAAAAG
AGAAGTAGGAGGAAGCTGTCTGGGGGAAGCGTGGAAAgcagaggaaatgg
aggctgGGTGGTCGGGCAaacgaagaggagatggtCTCGATCCAACCCCA
GGAAGCGTCGATCCTCTTGGCAGCCTTGCAGCCCAGCCCTAACACAAccc
ccccttgtccctgTGCCGTTGACATATCAGGGAAAGTCCGAGCAACAGAT
GAAGGATCTGGAGCTCAAGGAGCTCAAGAATGGCCGCCTGGCAATGGTAA
GTCGCAGACAGTGCCCCGTGCACTCTCAGAGACGTGTTCGTAGACGCGAC
TGCTCTCTGCCAATTTTTCCAAGAGCATTGCCTTTTTTGAAAATTTTCAT
GGTCTCGTGATCCTCGTCTTCAACTTCGACGACAACCCTCTTGCATGGTT
GCCCTCTGATTCgaacgtcctccgccccattCCCATGTTCCTTCtgactc
ccctccccccttgtcctaACCCCCAActcccggcccctcttcAGATCGCC
ATCATCGGACTCATGGCCCAGACCGCCTACACGGGCattccccttttctc
ttgAACGGGTCAAGGGCTAGGTCTTGAGAATTGGTAGGAAATTACATgtg
ttgggggaggaaagatgacATCGAGCCCTTTGCCCATTGTCCAGTATGCA
TGACTGTGGAAGGGACAGCGCCGACTCCATCTCTTTATATACAACATtgt
ggcgagggaggataggGGACGGTCCTACAGTAGAGGCAGCATTCAATGCA
TGCGGGTTTCATTTCATTTCCAATTGATCGGCTCTCTCTAGTGCGCGCGC
GTGTTTTCAGCTTTCTCCGGTTCTACTTGTAGCAGTATCTGTGGGACGTT
CGTTACGATTTAGCGGATTCTTACGAGACATTTAAAATTCGAAACGGATT
GATCCTTGCGAAGGATGAGTGGCGACGAAAACGGTTTTCTAACGCTTGCT
ATAACGTTTTGGTTTCCCCTTCCATTTTGGCACGTATTTCATCGAGCCCT
TTCTACCCTTCGAGACGAATCGAGCAACCATAGATCGAGCAATAAAGTAA
AGTGGTTGTGGATGCGGTGGGATCGAATTCTGTAACAACCTTCCTTTTGT
TTGTCACATTGTTTGACTCCTGTTTGTCAGCCTCTGc

Coding sequence (CDS) from alignment at CM002466.1:823323..825709+

>rna5777 ID=rna5777|Name=rna5777|organism=Nannochloropsis gaditana|type=CDS|length=3015bp|location=Sequence derived from alignment at CM002466.1:823323..825709+ (Nannochloropsis gaditana)
ATGAAgttcgcctccctcctgtctttgcTTGcggcccccctcctggcctc
tgCTTTCCTTGCTCCGGCCCCCAAGACTACTCGCGCCCGCGGTGTGGTCT
CCATGGTCCAATCCAAAGCTCTGCCTTTCTTGGCTGCCCCGAAGAAGCTA
GATGGTTCCCTGGTCGGCGACTTTGGCTTCGACCCCATGGGGATCTCGGA
TCAGGTGGCAAATTTGAAGTACGTACGCGCGGCCGAGCTTAAACACGGGC
GGGTGGCCATGCTTGGTTTCCTAGGCTGGGTCGTGACGCAAttcgtccac
ctcccgggGGAGATCTACGCGGAATCCAACCCGCTGAAGGCGATCGCCGC
CGTGCCCCTCATCAGCCACGTGCAAATCTTTCTCTTCATCGCTGCCATCG
AGCTGGCGACCCTGGATAGGACGTACACGGCGGACAAGCCTTGGGACCTG
GGCTTCGACCCCATGAACATGAGCAAGGGAAAGTCCGAGCAACAGATGAA
GGATCTGGAGCTCAAGGAGCTCAAGAATGGCCGCCTGGCAATGATCGCCA
TCATCGGACTCATGGCCCAGACCGCCTACACGGGCattccccttttctct
tgAATGAAgttcgcctccctcctgtctttgcTTGcggcccccctcctggc
ctctgCTTTCCTTGCTCCGGCCCCCAAGACTACTCGCGCCCGCGGTGTGG
TCTCCATGGTCCAATCCAAAGCTCTGCCTTTCTTGGCTGCCCCGAAGAAG
CTAGATGGTTCCCTGGTCGGCGACTTTGGCTTCGACCCCATGGGGATCTC
GGATCAGGTGGCAAATTTGAAGTACGTACGCGCGGCCGAGCTTAAACACG
GGCGGGTGGCCATGCTTGGTTTCCTAGGCTGGGTCGTGACGCAAttcgtc
cacctcccgggGGAGATCTACGCGGAATCCAACCCGCTGAAGGCGATCGC
CGCCGTGCCCCTCATCAGCCACGTGCAAATCTTTCTCTTCATCGCTGCCA
TCGAGCTGGCGACCCTGGATAGGACGTACACGGCGGACAAGCCTTGGGAC
CTGGGCTTCGACCCCATGAACATGAGCAAGGGAAAGTCCGAGCAACAGAT
GAAGGATCTGGAGCTCAAGGAGCTCAAGAATGGCCGCCTGGCAATGATCG
CCATCATCGGACTCATGGCCCAGACCGCCTACACGGGCattccccttttc
tcttgAATGAAgttcgcctccctcctgtctttgcTTGcggcccccctcct
ggcctctgCTTTCCTTGCTCCGGCCCCCAAGACTACTCGCGCCCGCGGTG
TGGTCTCCATGGTCCAATCCAAAGCTCTGCCTTTCTTGGCTGCCCCGAAG
AAGCTAGATGGTTCCCTGGTCGGCGACTTTGGCTTCGACCCCATGGGGAT
CTCGGATCAGGTGGCAAATTTGAAGTACGTACGCGCGGCCGAGCTTAAAC
ACGGGCGGGTGGCCATGCTTGGTTTCCTAGGCTGGGTCGTGACGCAAttc
gtccacctcccgggGGAGATCTACGCGGAATCCAACCCGCTGAAGGCGAT
CGCCGCCGTGCCCCTCATCAGCCACGTGCAAATCTTTCTCTTCATCGCTG
CCATCGAGCTGGCGACCCTGGATAGGACGTACACGGCGGACAAGCCTTGG
GACCTGGGCTTCGACCCCATGAACATGAGCAAGGGAAAGTCCGAGCAACA
GATGAAGGATCTGGAGCTCAAGGAGCTCAAGAATGGCCGCCTGGCAATGA
TCGCCATCATCGGACTCATGGCCCAGACCGCCTACACGGGCattcccctt
ttctcttgAATGAAgttcgcctccctcctgtctttgcTTGcggcccccct
cctggcctctgCTTTCCTTGCTCCGGCCCCCAAGACTACTCGCGCCCGCG
GTGTGGTCTCCATGGTCCAATCCAAAGCTCTGCCTTTCTTGGCTGCCCCG
AAGAAGCTAGATGGTTCCCTGGTCGGCGACTTTGGCTTCGACCCCATGGG
GATCTCGGATCAGGTGGCAAATTTGAAGTACGTACGCGCGGCCGAGCTTA
AACACGGGCGGGTGGCCATGCTTGGTTTCCTAGGCTGGGTCGTGACGCAA
ttcgtccacctcccgggGGAGATCTACGCGGAATCCAACCCGCTGAAGGC
GATCGCCGCCGTGCCCCTCATCAGCCACGTGCAAATCTTTCTCTTCATCG
CTGCCATCGAGCTGGCGACCCTGGATAGGACGTACACGGCGGACAAGCCT
TGGGACCTGGGCTTCGACCCCATGAACATGAGCAAGGGAAAGTCCGAGCA
ACAGATGAAGGATCTGGAGCTCAAGGAGCTCAAGAATGGCCGCCTGGCAA
TGATCGCCATCATCGGACTCATGGCCCAGACCGCCTACACGGGCattccc
cttttctcttgAATGAAgttcgcctccctcctgtctttgcTTGcggcccc
cctcctggcctctgCTTTCCTTGCTCCGGCCCCCAAGACTACTCGCGCCC
GCGGTGTGGTCTCCATGGTCCAATCCAAAGCTCTGCCTTTCTTGGCTGCC
CCGAAGAAGCTAGATGGTTCCCTGGTCGGCGACTTTGGCTTCGACCCCAT
GGGGATCTCGGATCAGGTGGCAAATTTGAAGTACGTACGCGCGGCCGAGC
TTAAACACGGGCGGGTGGCCATGCTTGGTTTCCTAGGCTGGGTCGTGACG
CAAttcgtccacctcccgggGGAGATCTACGCGGAATCCAACCCGCTGAA
GGCGATCGCCGCCGTGCCCCTCATCAGCCACGTGCAAATCTTTCTCTTCA
TCGCTGCCATCGAGCTGGCGACCCTGGATAGGACGTACACGGCGGACAAG
CCTTGGGACCTGGGCTTCGACCCCATGAACATGAGCAAGGGAAAGTCCGA
GCAACAGATGAAGGATCTGGAGCTCAAGGAGCTCAAGAATGGCCGCCTGG
CAATGATCGCCATCATCGGACTCATGGCCCAGACCGCCTACACGGGCatt
ccccttttctcttgA

Synonyms

Publications