NO10G03330, NO10G03330 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO10G03330 vs. NCBI_GenBank
Match: EWM25546.1 (hypothetical protein Naga_100130g8 [Nannochloropsis gaditana]) HSP 1 Score: 694.5 bits (1791), Expect = 5.700e-196 Identity = 376/623 (60.35%), Postives = 425/623 (68.22%), Query Frame = 0
Query: 1 MEKSRVQAYLQSACSVLGFSVGEIWCCRDNQDQASPQDLRFIQLYTSPEFEKYRPQLIEPXXXXXXXXXXXXXXXXXXXXXXXXADLSKHCFSPLICAAVQEAKQIVWAYTPAYDGLMGRAALPLRSAVGAPVCTIGQDLVILIMFSPTVLELTEEAHRFLFTVAQAASDAVCGFLPASLASPSSSSFTSGCRNXXXXXXXXXXXXXXXXXXXXRHTRAFIEALPASVTFQMVQMA-ETVGINLPIKTEFLETFNSIYNPPPPPLMPMTRGESDEGHGERLTHGEGGREDGDDDLDIDAFDSLPPLEDCFLPADVLEDAALMEGLREGGVGGDDWDFGAALDFIFDKDQGGEELGVGTEGEWFGPGRGREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDSPIRFFYEDAIQKLRFEEFVKGFLSMSVFHTAECWVARGGETLEQVYCATCLADIQSWVQFSSKLHGDTKRALPARVLVENRAIWERDFERLNPSSGEGGQGGREGGGGKHVIQTAFGLPVHIDKSHRLIVIFYSTFSIEPAQVTESFVKRALDMLWNKDAQCA 623
ME+SR+QAYLQSACSVLGFSVGEIWCC D +D ASP +LRFIQLYTSPE+++YR QLIEP D+S H FSPL+CAAVQEAKQ+VWA TPA DGL+ R +L LRSAVG PVC+IG+++V+L+MFSP VLELTEEAHRFL+TVAQAASDAVCGFLPAS+AS +S G R+ HTR IEALPASVTFQMV+MA E VG+N+PIKTEFLETFNSIYNPPPPPLMP+ G +G GE + LD+DAFDSLPPLEDCFLP ++LED LM GLR+ G+ G+DWDFGAALDFIFDKDQGGEELGVGTEGEWFGPG+GREG DS IRFFYEDA+Q+LRFEEFVKGFLSMSVFHTAECWVARG ETLEQVYCATCLAD+QSWV+FSSKLHGDT+RALPARVLVEN+AIWERD +RLNPS GG GG GKHVIQTAFGLPVH+D+SHRL+VIFYST+SIEPA++ ESFVKRALD+LWNKDAQ A
Sbjct: 1 MEQSRLQAYLQSACSVLGFSVGEIWCCNDTKDAASPLNLRFIQLYTSPEYDRYRSQLIEP-----PPDALEAPARRDDAKSPVPMDVSGHSFSPLVCAAVQEAKQVVWASTPAKDGLLSRPSLQLRSAVGVPVCSIGKEVVLLLMFSPAVLELTEEAHRFLYTVAQAASDAVCGFLPASVASSLVTSAAWGPRSPLSDPTAPGENNMP-------HTRTLIEALPASVTFQMVEMASEMVGVNVPIKTEFLETFNSIYNPPPPPLMPVAGG---DGQGE------------EKGLDLDAFDSLPPLEDCFLPTELLEDGVLMSGLRDEGMTGEDWDFGAALDFIFDKDQGGEELGVGTEGEWFGPGKGREGGEVLNGGMTEGGQPDRLSQHTEASQPSGMDDNQSNLKQEVGGLQGKGSDREQGE---------------------------------DSVIRFFYEDALQRLRFEEFVKGFLSMSVFHTAECWVARGKETLEQVYCATCLADVQSWVRFSSKLHGDTQRALPARVLVENQAIWERDAQRLNPSGAGGGGMENGGGAGKHVIQTAFGLPVHVDQSHRLVVIFYSTYSIEPAEIMESFVKRALDLLWNKDAQHA 563
BLAST of NO10G03330 vs. NCBI_GenBank
Match: GAX10792.1 (hypothetical protein FisN_1Hh333 [Fistulifera solaris]) HSP 1 Score: 107.8 bits (268), Expect = 2.300e-19 Identity = 69/196 (35.20%), Postives = 105/196 (53.57%), Query Frame = 0
Query: 1 MEKSRVQAYLQSACSVLGFSVGEIW-----------CCRDNQDQA-----SPQDLRFIQLYTSPEFEKYRPQLIEPXXXXXXXXXXXXXXXXXXXXXXXXADLSKHCFSPLICAAVQEAKQIVWAYTPAYDGLMGRAALPLRSAVGAPVCT-IGQDLVILIMFSPTVLELTEEAHRFLFTVAQ-AASDAVCGFLPA 179
M+ RV+AYLQ+AC+ LGF VGE+W ++QD A + LRF+QLYTS FE +R +LI P A++S+H SP + A+ Q+VWA T +GL GR+ + L++AVG PV ++ +++MFSP ++ TE+A FL +++Q AA+ ++ LPA
Sbjct: 1 MDPERVRAYLQAACAGLGFDVGEVWWTSSENGSSTVAAIEDQDSALARSQGRRQLRFVQLYTSKNFESHRAELINP------------PDHSWNDKNDSEAEVSEHVLSPRLVNAISSTAQVVWATTKKQEGLTGRSDVVLQTAVGMPVAVDANGNMCVVVMFSPNNIQSTEDALDFLRSLSQSAATTSIPCLLPA 184
BLAST of NO10G03330 vs. NCBI_GenBank
Match: GAX21000.1 (hypothetical protein FisN_1Lh333 [Fistulifera solaris]) HSP 1 Score: 106.7 bits (265), Expect = 5.100e-19 Identity = 68/196 (34.69%), Postives = 105/196 (53.57%), Query Frame = 0
Query: 1 MEKSRVQAYLQSACSVLGFSVGEIW-----------CCRDNQDQA-----SPQDLRFIQLYTSPEFEKYRPQLIEPXXXXXXXXXXXXXXXXXXXXXXXXADLSKHCFSPLICAAVQEAKQIVWAYTPAYDGLMGRAALPLRSAVGAPVCT-IGQDLVILIMFSPTVLELTEEAHRFLFTVAQ-AASDAVCGFLPA 179
M+ RV+AYLQ+AC+ LGF VGE+W ++QD A + LRF+QLYTS FE +R +LI P A++S+H SP + A+ Q+VWA T +GL GR+ + L++AVG PV ++ +++MFSP ++ TE++ FL +++Q AA+ ++ LPA
Sbjct: 1 MDPERVRAYLQAACAGLGFDVGEVWWTSSENGSSTVAAIEDQDSALARSQGRRQLRFVQLYTSKNFESHRAELINP------------PDHSWNDKNDSEAEVSEHVLSPRLVNAISSTAQVVWATTKKQEGLTGRSDVVLQTAVGMPVAVDANGNMCVVVMFSPNNIQSTEDSLDFLRSLSQSAATTSIPCLLPA 184
BLAST of NO10G03330 vs. NCBI_GenBank
Match: EJK46480.1 (hypothetical protein THAOC_34847 [Thalassiosira oceanica]) HSP 1 Score: 72.4 bits (176), Expect = 1.100e-8 Identity = 55/212 (25.94%), Postives = 92/212 (43.40%), Query Frame = 0
Query: 1 MEKSRVQAYLQSACSVLGFSVGEIWCCRDNQDQAS---------------------PQDLRFIQLYTSPEFEKYRPQLIEP----------------XXXXXXXXXXXXXXXXXXXXXXXXADLS-----KHCFSPLICAAVQEAKQIVWAYTPAYDGLMGRAALPLRSAVGAPVCTIGQDLV-ILIMFSPTVLELTEEAHRFLFTVAQAAS 170
M+ RV++YLQ AC+ LGF +GE+W ++ S P RF+QLYTS + R +L++P +++S +H SP I AV + Q+VWA +GL+GR+ + L++A+G PV V +++MFSP +E + +A +L ++ +A+
Sbjct: 1 MDADRVRSYLQVACAGLGFDIGEVWWMQNENGTTSQAVAAIAEDSNANISGAITTKPPKKRFLQLYTSKAYCNQRSKLVQPHENENDEDGSSPELSDSKTGVNDRYAGSSSQQLATLRRSSSEVSLELEREHVLSPRIVEAVTNSTQVVWANCQKSEGLLGRSDVKLQTAIGMPVGVDATGNVWVVVMFSPQNVESSRDAIDYLQYISNSAA 212 The following BLAST results are available for this feature:
BLAST of NO10G03330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G03330 ID=NO10G03330|Name=NO10G03330|organism=Nannochloropsis oceanica|type=gene|length=5190bpback to top protein sequence of NO10G03330.2 >NO10G03330.2-protein ID=NO10G03330.2-protein|Name=NO10G03330.2|organism=Nannochloropsis oceanica|type=polypeptide|length=1317bpback to top protein sequence of NO10G03330.1 >NO10G03330.1-protein ID=NO10G03330.1-protein|Name=NO10G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1191bpback to top Synonyms
Publications
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