NO10G01690, NO10G01690 (gene) Nannochloropsis oceanica

Overview
NameNO10G01690
Unique NameNO10G01690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1568
Alignment locationchr10:475717..477284 -

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Properties
Property NameValue
DescriptionGlutathione peroxidase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:475717..477284 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004602glutathione peroxidase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
GO:0042221response to chemical
GO:0009987cellular process
GO:0008152metabolic process
GO:0006950response to stress
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR000889Glutathione_peroxidase
Homology
[Close]
BLAST of NO10G01690 vs. NCBI_GenBank
Match: EWM25392.1 (glutathione peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 282.0 bits (720), Expect = 2.000e-72
Identity = 135/168 (80.36%), Postives = 150/168 (89.29%), Query Frame = 0 
Query:   92 PASSSRAGFLQIVAALTLGGGLFLPGTAGQALAVPASEGPDLNPILLQMEGKTIRFGDAKGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNHNPKLSWNFT 260
            P   SRA +LQ +AALTL GG+ L G +G A AVPA+EGPDLN ILLQ  GK++RFGDAKGKKAT+VVNVASQCALTGGNYPGLQ+L+EKYHDQGLE+LAFPSNQFGFQEPDPVEKVR DMKDRFGV FPIY+KVDVNG GAHPL+AALKKYEPELS ++PKLSWNFT
Sbjct:   61 PLKLSRAAYLQKLAALTL-GGVSLAGKSGSASAVPAAEGPDLNSILLQKAGKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFT 227
[Close]
BLAST of NO10G01690 vs. NCBI_GenBank
Match: XP_014510189.1 (probable phospholipid hydroperoxide glutathione peroxidase [Vigna radiata var. radiata])

HSP 1 Score: 120.6 bits (301), Expect = 7.600e-24
Identity = 60/119 (50.42%), Postives = 76/119 (63.87%), Query Frame = 0 
Query:  141 EGKTIRFGDAKGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNHNPKLSWNFT 260
            +G  I  GD KG K  I+VNVASQC LT  NY  L  L+EKY  +GLE+LAFP NQFG QEP   E++++ +  RF   FP++NKVDVNG  A PL+  LK  +  L   N  + WNF+
Sbjct:   88 KGNDINLGDYKG-KVLIIVNVASQCGLTNSNYTELSQLYEKYKQKGLEILAFPCNQFGAQEPGSNEQIQEFVCTRFKAEFPVFNKVDVNGDSADPLYKYLKSSKGGLFGDN--IKWNFS 203
[Close]
BLAST of NO10G01690 vs. NCBI_GenBank
Match: ETI42605.1 (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 120.2 bits (300), Expect = 9.900e-24
Identity = 60/129 (46.51%), Postives = 77/129 (59.69%), Query Frame = 0 
Query:  131 PDLNPILLQMEGKTIRFGDAKGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNHNPKLSWNFT 260
            PDLN       G+ +   +       +VVNVAS+C  T  NY  LQ+L+EKYHD+G  VL FP NQFG QEP   E + K  K+++ VTFP++ KVDVNG  AHPLF  LKK       ++  + WNFT
Sbjct:   31 PDLN-------GRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDILKFTKEKYHVTFPLFAKVDVNGENAHPLFKFLKKKLDGFVTND--IKWNFT 150
[Close]
BLAST of NO10G01690 vs. NCBI_GenBank
Match: ETK82611.1 (hypothetical protein L915_12002 [Phytophthora parasitica] >ETL36001.1 hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 120.2 bits (300), Expect = 9.900e-24
Identity = 60/129 (46.51%), Postives = 77/129 (59.69%), Query Frame = 0 
Query:  131 PDLNPILLQMEGKTIRFGDAKGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNHNPKLSWNFT 260
            PDLN       G+ +   +       +VVNVAS+C  T  NY  LQ+L+EKYHD+G  VL FP NQFG QEP   E + K  K+++ VTFP++ KVDVNG  AHPLF  LKK       ++  + WNFT
Sbjct:   32 PDLN-------GRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDILKFTKEKYHVTFPLFAKVDVNGENAHPLFKFLKKKLDGFVTND--IKWNFT 151
[Close]
BLAST of NO10G01690 vs. NCBI_GenBank
Match: AFK42386.1 (unknown [Medicago truncatula])

HSP 1 Score: 120.2 bits (300), Expect = 9.900e-24
Identity = 58/119 (48.74%), Postives = 77/119 (64.71%), Query Frame = 0 
Query:  141 EGKTIRFGDAKGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNHNPKLSWNFT 260
            +G  +  GD KG K  I+VNVASQC LT  NY  L  L+EKY  +GLE+LAFP NQFG QEP  VE+++  ++ RF   FP+++KVDVNGA A P++  LK  +  L      + WNF+
Sbjct:   85 KGNDVNLGDYKG-KVLIIVNVASQCGLTNSNYTELSQLYEKYKSKGLEILAFPCNQFGAQEPGSVEEIQNFVRTRFKAGFPVFDKVDVNGATAAPIYKYLKSSKGGLFGDG--IKWNFS 200
[Close]
BLAST of NO10G01690 vs. NCBI_GenBank
Match: KOM57098.1 (hypothetical protein LR48_Vigan11g013000 [Vigna angularis])

HSP 1 Score: 119.8 bits (299), Expect = 1.300e-23
Identity = 60/119 (50.42%), Postives = 75/119 (63.03%), Query Frame = 0 
Query:  141 EGKTIRFGDAKGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNHNPKLSWNFT 260
            +G  I  GD KG K  I+VNVASQC LT  NY  L  L+EKY  +GLE+LAFP NQFG QEP   E+++  +  RF   FP++NKVDVNG  A PL+  LK  +  L   N  + WNF+
Sbjct:   18 KGNDINLGDYKG-KVLIIVNVASQCGLTNSNYTELSQLYEKYKQKGLEILAFPCNQFGAQEPGSNEQIQDFVCTRFKAEFPVFNKVDVNGDSADPLYKYLKSSKGGLFGDN--IKWNFS 133
[Close]
BLAST of NO10G01690 vs. NCBI_GenBank
Match: BAT73083.1 (hypothetical protein VIGAN_01054100 [Vigna angularis var. angularis])

HSP 1 Score: 119.8 bits (299), Expect = 1.300e-23
Identity = 60/119 (50.42%), Postives = 75/119 (63.03%), Query Frame = 0 
Query:  141 EGKTIRFGDAKGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNHNPKLSWNFT 260
            +G  I  GD KG K  I+VNVASQC LT  NY  L  L+EKY  +GLE+LAFP NQFG QEP   E+++  +  RF   FP++NKVDVNG  A PL+  LK  +  L   N  + WNF+
Sbjct:   87 KGNDINLGDYKG-KVLIIVNVASQCGLTNSNYTELSQLYEKYKQKGLEILAFPCNQFGAQEPGSNEQIQDFVCTRFKAEFPVFNKVDVNGDSADPLYKYLKSSKGGLFGDN--IKWNFS 202
[Close]
BLAST of NO10G01690 vs. NCBI_GenBank
Match: XP_017442196.1 (PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Vigna angularis])

HSP 1 Score: 119.8 bits (299), Expect = 1.300e-23
Identity = 60/119 (50.42%), Postives = 75/119 (63.03%), Query Frame = 0 
Query:  141 EGKTIRFGDAKGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNHNPKLSWNFT 260
            +G  I  GD KG K  I+VNVASQC LT  NY  L  L+EKY  +GLE+LAFP NQFG QEP   E+++  +  RF   FP++NKVDVNG  A PL+  LK  +  L   N  + WNF+
Sbjct:   87 KGNDINLGDYKG-KVLIIVNVASQCGLTNSNYTELSQLYEKYKQKGLEILAFPCNQFGAQEPGSNEQIQDFVCTRFKAEFPVFNKVDVNGDSADPLYKYLKSSKGGLFGDN--IKWNFS 202
[Close]
BLAST of NO10G01690 vs. NCBI_GenBank
Match: POM65621.1 (Glutathione peroxidase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 119.8 bits (299), Expect = 1.300e-23
Identity = 56/120 (46.67%), Postives = 75/120 (62.50%), Query Frame = 0 
Query:  140 MEGKTIRFGDAKGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNHNPKLSWNFT 260
            + G+ +   +       +VVNVAS+C  T  NY  LQ+L+EKYHD+G  VLAFP NQFG QEP   E + K  ++++ VTFP++ KVDVNG  AHPLF  LKK       ++  + WNFT
Sbjct:   38 LRGRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFMVLAFPCNQFGGQEPGTAEDILKFTQEKYHVTFPLFTKVDVNGENAHPLFQFLKKQLDGFITND--IKWNFT 155
[Close]
BLAST of NO10G01690 vs. NCBI_GenBank
Match: ETL89228.1 (hypothetical protein, variant [Phytophthora parasitica] >ETM42508.1 hypothetical protein, variant [Phytophthora parasitica] >ETO71199.1 hypothetical protein, variant [Phytophthora parasitica P1976] >KUF79065.1 Glutathione peroxidase [Phytophthora nicotianae])

HSP 1 Score: 119.4 bits (298), Expect = 1.700e-23
Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 0 
Query:  131 PDLNPILLQMEGKTIRFGDAKGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALK-KYEPELSNHNPKLSWNFT 260
            PDLN       G+ +   +       +VVNVAS+C  T  NY  LQ+L+EKYHD+G  VL FP NQFG QEP   E + K  K+++ VTFP++ KVDVNG  AHPLF  LK K +  ++N    + WNFT
Sbjct:   31 PDLN-------GRQVSMREFNAFPVILVVNVASECGYTDKNYRELQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDILKFTKEKYHVTFPLFAKVDVNGENAHPLFKFLKTKLDGFVTN---DIKWNFT 150
The following BLAST results are available for this feature:
BLAST of NO10G01690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25392.12.000e-7280.36glutathione peroxidase [Nannochloropsis gaditana][more]
XP_014510189.17.600e-2450.42probable phospholipid hydroperoxide glutathione pe... [more]
ETI42605.19.900e-2446.51hypothetical protein, variant [Phytophthora parasi... [more]
ETK82611.19.900e-2446.51hypothetical protein L915_12002 [Phytophthora para... [more]
AFK42386.19.900e-2448.74unknown [Medicago truncatula][more]
KOM57098.11.300e-2350.42hypothetical protein LR48_Vigan11g013000 [Vigna an... [more]
BAT73083.11.300e-2350.42hypothetical protein VIGAN_01054100 [Vigna angular... [more]
XP_017442196.11.300e-2350.42PREDICTED: probable phospholipid hydroperoxide glu... [more]
POM65621.11.300e-2346.67Glutathione peroxidase [Phytophthora palmivora var... [more]
ETL89228.11.700e-2346.92hypothetical protein, variant [Phytophthora parasi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001040NSK001040Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01690.2NO10G01690.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G01690.1NO10G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586297gene_4046Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g85gene5112Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01690.2NO10G01690.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G01690.1NO10G01690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01690 ID=NO10G01690|Name=NO10G01690|organism=Nannochloropsis oceanica|type=gene|length=1568bp
ATGAGGGTCTCTGCCCTGACTTTGCGATTGGGGATGGTAGTTGCGTTGTA
TCGGGgtatggaaaaagtctcagtgatagaggcaatcgaagttactggcg
attcccacgactccatccatgctgacctggtcagttgcccgagaccgttt
gaggtacattttcctcacccatttcctgccaccacaacgcacagGTGTCT
CGAAGGCTATGTCTAAATTTACCACATGGTGTCTCCTGCTGCTGCAGGCT
GCTGTGACGGTGCAAGCCTTCTTCCAGCCTTCCCACCCTTCCTTCACCCG
GACACGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGAGGATGA
CACTAGCAGACCCCCATGTATCCTCGTCCATCCTCTCCACTCCCAGGCGC
TCTACTGTCTTACCAGCCTCGTCCTCTCGTGCAGGTTTTTTGCAGATAGT
CGCTGCGCTGACGCTTGGTGGTGGCCTCTTTCTCCCCGGCACCGCAGGTC
AGGCACTTGCCGTACCTGCATCTGAGGGCCCTGATCTCAACCCAATTCTC
CTGCAAATGGAAGGCAAAACTATCCGATTTGGAGATGCCAAGGGTAAAAA
GGCCACAATTGTGGTTAATGTGgtatgttgccagggttgtgcgagtgaaa
gaggacaggagggggtctagaaggagccgaaacatcttgttattttcttt
ttcgaaccttttaccccattctcttcccactacaactcagGCATCGCAGT
GTGCTCTAACTGGAGgtgagtgaccttttgaggcggcagtacgcgggggg
agagttgcatggattgctttagagtacattacttgtgccctcaactcaat
ctcttttcctccaccccaactcccgcaattatgaagGCAACTACCCGGGC
CTGCAAGATTTGTTCGAGAAATACCACGATCAAGGCTTGGAGGTGCTGGC
TTTTCCTTCAAACCAGgtacgtctattatcttgagtctccgggggaatgc
tacagtatgacttacgccgccccccttccctcccaccatcagTTTGGATT
TCAAGAGCCCGACCCTGTGGAAAAAGTACGCAAGGATATGAAGGATCGAT
TCGGCGTCACATTCCCCATTTATAACAAGGTGGACGTGAATGGAGCTGGG
GCGCATCCGTTGTTCGCAGCCTTGAAGAAGTATGAGCCCGAGCTCTCAAA
TCACAATCCTAAGTTGAGCTGGAATTTCACTgtaagttgttgttgataga
gcgctgcttcacccgaaattttccggatggttgattgatctcgactttct
tcccattccatttaacctcttgaccccctccactctgaccacgcgtagAA
ATTTCTCATGGACGCGGATGGAGTTCCTGTCCGCCGCTACCAGCCAGGCA
TCGATCCAGAGCAAATGGAGGGAGACATTAAGAGCCTCTTGGCAGGCAAA
AAGCTTCCCTCTGCCCGGAAGACAAGTTTGAATGAGTACTAGAAAATTGA
GAAGAGAATGCTGATTGGTTGCAAACAAAAGCAAGGGGCGAATGTGAGAC
ACATTTGTGACTATCGAT
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protein sequence of NO10G01690.2

>NO10G01690.2-protein ID=NO10G01690.2-protein|Name=NO10G01690.2|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MRVSALTLRLGMVVALYRGVSKAMSKFTTWCLLLLQAAVTVQAFFQPSHP
SFTRTRSSSSSSSSSSSMRMTLADPHVSSSILSTPRRSTVLPASSSRAGF
LQIVAALTLGGGLFLPGTAGQALAVPASEGPDLNPILLQMEGKTIRFGDA
KGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQ
EPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNH
NPKLSWNFTVSCC*
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protein sequence of NO10G01690.1

>NO10G01690.1-protein ID=NO10G01690.1-protein|Name=NO10G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MRVSALTLRLGMVVALYRGVSKAMSKFTTWCLLLLQAAVTVQAFFQPSHP
SFTRTRSSSSSSSSSSSMRMTLADPHVSSSILSTPRRSTVLPASSSRAGF
LQIVAALTLGGGLFLPGTAGQALAVPASEGPDLNPILLQMEGKTIRFGDA
KGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQ
EPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNH
NPKLSWNFTKFLMDADGVPVRRYQPGIDPEQMEGDIKSLLAGKKLPSARK
TSLNEY*
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Synonyms
Publications