NO10G01690.1, NO10G01690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01690.1
Unique NameNO10G01690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length997
Alignment locationchr10:475717..477284 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:475717..477284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01690.1 vs.
Match: EWM25392.1 (glutathione peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 361.3 bits (926), Expect = 3.000e-96
Identity = 185/283 (65.37%), Postives = 222/283 (78.45%), Query Frame = 0 
Query:   24 MSKFTTWCLLLLQAAVTVQAFFQPSHPSFTRTRSSSSSSSSSSSMRMTLADPHVSSSILSTPRRSTVLPASSSRAGFLQIVAALTLGGGLFLPGTAGQALAVPASEGPDLNPILLQMEGKTIRFGDAKGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNHNPKLSWNFTKFLMDADGVPVRRYQPGIDPEQMEGDIKSLLAGKKLPSARKTSLNEY 307
            M+K  ++ LL   A ++     +P +P+      S     +++++RM +    V+  +L+    S   P   SRA +LQ +AALTLGG + L G +G A AVPA+EGPDLN ILLQ  GK++RFGDAKGKKAT+VVNVASQCALTGGNYPGLQ+L+EKYHDQGLE+LAFPSNQFGFQEPDPVEKVR DMKDRFGV FPIY+KVDVNG GAHPL+AALKKYEPELS ++PKLSWNFTKFL++ADG PVRRYQPG+DPE+ME DI S+L GKKLPSARK SLNEY
Sbjct:    1 MAKLLSFLLLTQSAVISYGFIGKPCYPT-----KSGGERHAATTLRMRMTSAGVAPDVLTFKNGS---PLKLSRAAYLQKLAALTLGG-VSLAGKSGSASAVPAAEGPDLNSILLQKAGKSVRFGDAKGKKATVVVNVASQCALTGGNYPGLQELYEKYHDQGLEILAFPSNQFGFQEPDPVEKVRNDMKDRFGVEFPIYDKVDVNGGGAHPLYAALKKYEPELSGYSPKLSWNFTKFLINADGTPVRRYQPGVDPEEMEADILSVLQGKKLPSARKKSLNEY 274
The following BLAST results are available for this feature:
BLAST of NO10G01690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25392.13.000e-9665.37glutathione peroxidase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01690NO10G01690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01690.1NO10G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01690.1.cds1NO10G01690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01690.1.cds2NO10G01690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01690.1.cds3NO10G01690.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01690.1.cds4NO10G01690.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01690.1.cds5NO10G01690.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01690.1.cds6NO10G01690.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01690.1 ID=NO10G01690.1|Name=NO10G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=997bp
ATGAGGGTCTCTGCCCTGACTTTGCGATTGGGGATGGTAGTTGCGTTGTA
TCGGGGTGTCTCGAAGGCTATGTCTAAATTTACCACATGGTGTCTCCTGC
TGCTGCAGGCTGCTGTGACGGTGCAAGCCTTCTTCCAGCCTTCCCACCCT
TCCTTCACCCGGACACGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CATGAGGATGACACTAGCAGACCCCCATGTATCCTCGTCCATCCTCTCCA
CTCCCAGGCGCTCTACTGTCTTACCAGCCTCGTCCTCTCGTGCAGGTTTT
TTGCAGATAGTCGCTGCGCTGACGCTTGGTGGTGGCCTCTTTCTCCCCGG
CACCGCAGGTCAGGCACTTGCCGTACCTGCATCTGAGGGCCCTGATCTCA
ACCCAATTCTCCTGCAAATGGAAGGCAAAACTATCCGATTTGGAGATGCC
AAGGGTAAAAAGGCCACAATTGTGGTTAATGTGGCATCGCAGTGTGCTCT
AACTGGAGGCAACTACCCGGGCCTGCAAGATTTGTTCGAGAAATACCACG
ATCAAGGCTTGGAGGTGCTGGCTTTTCCTTCAAACCAGTTTGGATTTCAA
GAGCCCGACCCTGTGGAAAAAGTACGCAAGGATATGAAGGATCGATTCGG
CGTCACATTCCCCATTTATAACAAGGTGGACGTGAATGGAGCTGGGGCGC
ATCCGTTGTTCGCAGCCTTGAAGAAGTATGAGCCCGAGCTCTCAAATCAC
AATCCTAAGTTGAGCTGGAATTTCACTAAATTTCTCATGGACGCGGATGG
AGTTCCTGTCCGCCGCTACCAGCCAGGCATCGATCCAGAGCAAATGGAGG
GAGACATTAAGAGCCTCTTGGCAGGCAAAAAGCTTCCCTCTGCCCGGAAG
ACAAGTTTGAATGAGTACTAGAAAATTGAGAAGAGAATGCTGATTGGTTG
CAAACAAAAGCAAGGGGCGAATGTGAGACACATTTGTGACTATCGAT
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protein sequence of NO10G01690.1

>NO10G01690.1-protein ID=NO10G01690.1-protein|Name=NO10G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MRVSALTLRLGMVVALYRGVSKAMSKFTTWCLLLLQAAVTVQAFFQPSHP
SFTRTRSSSSSSSSSSSMRMTLADPHVSSSILSTPRRSTVLPASSSRAGF
LQIVAALTLGGGLFLPGTAGQALAVPASEGPDLNPILLQMEGKTIRFGDA
KGKKATIVVNVASQCALTGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQ
EPDPVEKVRKDMKDRFGVTFPIYNKVDVNGAGAHPLFAALKKYEPELSNH
NPKLSWNFTKFLMDADGVPVRRYQPGIDPEQMEGDIKSLLAGKKLPSARK
TSLNEY*
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mRNA from alignment at chr10:475717..477284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01690.1 ID=NO10G01690.1|Name=NO10G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1568bp|location=Sequence derived from alignment at chr10:475717..477284- (Nannochloropsis oceanica)
ATGAGGGTCTCTGCCCTGACTTTGCGATTGGGGATGGTAGTTGCGTTGTA
TCGGGGTATGGAAAAAGTCTCAGTGATAGAGGCAATCGAAGTTACTGGCG
ATTCCCACGACTCCATCCATGCTGACCTGGTCAGTTGCCCGAGACCGTTT
GAGGTACATTTTCCTCACCCATTTCCTGCCACCACAACGCACAGGTGTCT
CGAAGGCTATGTCTAAATTTACCACATGGTGTCTCCTGCTGCTGCAGGCT
GCTGTGACGGTGCAAGCCTTCTTCCAGCCTTCCCACCCTTCCTTCACCCG
GACACGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGAGGATGA
CACTAGCAGACCCCCATGTATCCTCGTCCATCCTCTCCACTCCCAGGCGC
TCTACTGTCTTACCAGCCTCGTCCTCTCGTGCAGGTTTTTTGCAGATAGT
CGCTGCGCTGACGCTTGGTGGTGGCCTCTTTCTCCCCGGCACCGCAGGTC
AGGCACTTGCCGTACCTGCATCTGAGGGCCCTGATCTCAACCCAATTCTC
CTGCAAATGGAAGGCAAAACTATCCGATTTGGAGATGCCAAGGGTAAAAA
GGCCACAATTGTGGTTAATGTGGTATGTTGCCAGGGTTGTGCGAGTGAAA
GAGGACAGGAGGGGGTCTAGAAGGAGCCGAAACATCTTGTTATTTTCTTT
TTCGAACCTTTTACCCCATTCTCTTCCCACTACAACTCAGGCATCGCAGT
GTGCTCTAACTGGAGGTGAGTGACCTTTTGAGGCGGCAGTACGCGGGGGG
AGAGTTGCATGGATTGCTTTAGAGTACATTACTTGTGCCCTCAACTCAAT
CTCTTTTCCTCCACCCCAACTCCCGCAATTATGAAGGCAACTACCCGGGC
CTGCAAGATTTGTTCGAGAAATACCACGATCAAGGCTTGGAGGTGCTGGC
TTTTCCTTCAAACCAGGTACGTCTATTATCTTGAGTCTCCGGGGGAATGC
TACAGTATGACTTACGCCGCCCCCCTTCCCTCCCACCATCAGTTTGGATT
TCAAGAGCCCGACCCTGTGGAAAAAGTACGCAAGGATATGAAGGATCGAT
TCGGCGTCACATTCCCCATTTATAACAAGGTGGACGTGAATGGAGCTGGG
GCGCATCCGTTGTTCGCAGCCTTGAAGAAGTATGAGCCCGAGCTCTCAAA
TCACAATCCTAAGTTGAGCTGGAATTTCACTGTAAGTTGTTGTTGATAGA
GCGCTGCTTCACCCGAAATTTTCCGGATGGTTGATTGATCTCGACTTTCT
TCCCATTCCATTTAACCTCTTGACCCCCTCCACTCTGACCACGCGTAGAA
ATTTCTCATGGACGCGGATGGAGTTCCTGTCCGCCGCTACCAGCCAGGCA
TCGATCCAGAGCAAATGGAGGGAGACATTAAGAGCCTCTTGGCAGGCAAA
AAGCTTCCCTCTGCCCGGAAGACAAGTTTGAATGAGTACTAGAAAATTGA
GAAGAGAATGCTGATTGGTTGCAAACAAAAGCAAGGGGCGAATGTGAGAC
ACATTTGTGACTATCGAT
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Coding sequence (CDS) from alignment at chr10:475717..477284-

>NO10G01690.1 ID=NO10G01690.1|Name=NO10G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr10:475717..477284- (Nannochloropsis oceanica)
ATGAGGGTCTCTGCCCTGACTTTGCGATTGGGGATGGTAGTTGCGTTGTA
TCGGGGTGTCTCGAAGGCTATGTCTAAATTTACCACATGGTGTCTCCTGC
TGCTGCAGGCTGCTGTGACGGTGCAAGCCTTCTTCCAGCCTTCCCACCCT
TCCTTCACCCGGACACGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CATGAGGATGACACTAGCAGACCCCCATGTATCCTCGTCCATCCTCTCCA
CTCCCAGGCGCTCTACTGTCTTACCAGCCTCGTCCTCTCGTGCAGGTTTT
TTGCAGATAGTCGCTGCGCTGACGCTTGGTGGTGGCCTCTTTCTCCCCGG
CACCGCAGGTCAGGCACTTGCCGTACCTGCATCTGAGGGCCCTGATCTCA
ACCCAATTCTCCTGCAAATGGAAGGCAAAACTATCCGATTTGGAGATGCC
AAGGGTAAAAAGGCCACAATTGTGGTTAATGTGGCATCGCAGTGTGCTCT
AACTGGAGGCAACTACCCGGGCCTGCAAGATTTGTTCGAGAAATACCACG
ATCAAGGCTTGGAGGTGCTGGCTTTTCCTTCAAACCAGTTTGGATTTCAA
GAGCCCGACCCTGTGGAAAAAGTACGCAAGGATATGAAGGATCGATTCGG
CGTCACATTCCCCATTTATAACAAGGTGGACGTGAATGGAGCTGGGGCGC
ATCCGTTGTTCGCAGCCTTGAAGAAGTATGAGCCCGAGCTCTCAAATCAC
AATCCTAAGTTGAGCTGGAATTTCACTAAATTTCTCATGGACGCGGATGG
AGTTCCTGTCCGCCGCTACCAGCCAGGCATCGATCCAGAGCAAATGGAGG
GAGACATTAAGAGCCTCTTGGCAGGCAAAAAGCTTCCCTCTGCCCGGAAG
ACAAGTTTGAATGAGTACTAG
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Synonyms
Publications