NO10G00900, NO10G00900 (gene) Nannochloropsis oceanica

Overview
NameNO10G00900
Unique NameNO10G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1859
Alignment locationchr10:285347..287205 +

Link to JBrowse

Properties
Property NameValue
DescriptionHeat shock chaperonin-binding protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:285347..287205 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006636STI1_HS-bd
Homology
The following BLAST results are available for this feature:
BLAST of NO10G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000954NSK000954Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00900.1NO10G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G00900.2NO10G00900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G00900.3NO10G00900.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586644gene_4129Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100281g4gene5188Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00900.1NO10G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G00900.2NO10G00900.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G00900.3NO10G00900.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00900 ID=NO10G00900|Name=NO10G00900|organism=Nannochloropsis oceanica|type=gene|length=1859bp
ACAGTAAATCTCAACCATGAGCCGCACCGCCCCCCTCTCTTTCATCCGGT
CCATCGCCCTGCTCCTTGGGCTTCTCGTCTTCCTCTTTGTGACCCCCTCT
ACGGACGCCCTGTTTAGCAAGCTGGCCAAAAAAAGGACACCTGTACAAGA
GGAGCAGGCGCCGGAGCAGAAACCGGAATACACGGGCAAAGAGAGTGCAA
ATATGGGACTTCAGGCCTTCCAGGACCTTTgtacgtaacgatgattgatg
atgagatttatttgtcttgtgcatgatcgatccttgtaatgtgacgggcg
aaggtgacggttacgaatgtgtgtataatgtgcagatagcgactcatgga
gtgctttgcgcaagaagaagtttgatgcttgtcccttgatctgtgatgga
gccatcgcatccacaacttttcctacttcccacactccatccatgctgcc
tcctgtctccaatccggccctgaaaaatgcgcgctgctgtgacccctatg
cttacctctcttcctccattcctccctccctatctttctgttcctcgcag
TCAACAACCCCAACGCCATGAAAGAGCTGTTGAAGTTGCAGGAAGACCCG
GAGTTTATGCATGAGGTGGAAGAGCTGATGGATGACCCTGAATTCCAGCA
ACAAGTCGACGAgtaagtcctccctttccctacttccttccttgtcctcg
tttcctcccttttgccttgcttcttcttccctcctccctgccctctctcc
ctcctttcctgcccctccctccctccttccctgcccctcctttcctctag
cccccccccttcccaaggtttttgaaaaatccgtcgacaaagatgccact
gggtactttgacatgcgtgcgtcattgagtcgctcaacccctcttccctt
ccctcccttcctccctcccccccgaagGTACTTGAAGAACCCGTCCACAA
AAATGGGGCTGGGCACCCTGGCCTCGGCCATGTCAAATCCCGCGGATGTG
CTGGAGACCATGGACATGCTCAATGACCCGGAGTTTGCAAAGGAGGTGGA
GGAGCTGgtacgtgtgtggggggggattggcgtgtatgagacaagataat
tgtgggagatgactgtgaaggtataatcgcattaccgtgagggattggcg
cgtgtactgggattagtgtgtgagatgagtgtgtgggattaccgcctggg
ataaccgagtgtgacgggactggggtgtgtgtgtgcaatcacatgtgggg
ataacgtgtgtgaccgatgtccatccgtctgtctgtctgatccaactaat
tactctttccattttcctcctttaacaccaccaacccccactccttccct
cttctactccctccttcctttcctccctcctcagATGGCCGACCCCTCGT
TTCAGGAGGAAATGAAGAAGATGGCCGAGACGCCTCTATTCGCCGAAGTC
ATTGAAAAGGCCAAAATCATGGCGGTAGGCCCTCCCTCCTTTCCTCGCTC
CCTTCCTCCCTTCCTCCCTCTTTCCATCGATTgtacggcttacccctccc
tccttccccccccccccccctcctcaaacaaaaggaacatcttcctcacg
gacatgcatgaggctgcaacaacaaaccgcctctcaccccctcctctctc
cccccctccctaaaccagGACGAGCTTCAAAAAGACCCGGCGGAGGTGGA
GAAGTTCTTGCAGAACGTAAGGGAAGAGATGGGCAAGTCACCTGAGTCGG
CAGAGGGGCTGCTGGCGGGCGGCGGGAAAGACGAGCTTTAGAGAAGAAAT
GGAGGGATGGAGGGAGGGAAGGAGGGAGGAGCTTTAGAGAAGGAGGAGGG
CGGGAGGGC
back to top

protein sequence of NO10G00900.1

>NO10G00900.1-protein ID=NO10G00900.1-protein|Name=NO10G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MSRTAPLSFIRSIALLLGLLVFLFVTPSTDALFSKLAKKRTPVQEEQAPE
QKPEYTGKESANMGLQAFQDLFNNPNAMKELLKLQEDPEFMHEVEELMDD
PEFQQQVDEYLKNPSTKMGLGTLASAMSNPADVLETMDMLNDPEFAKEVE
ELMADPSFQEEMKKMAETPLFAEVIEKAKIMADELQKDPAEVEKFLQNVR
EEMGKSPESAEGLLAGGGKDEL*
back to top

protein sequence of NO10G00900.2

>NO10G00900.2-protein ID=NO10G00900.2-protein|Name=NO10G00900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MSRTAPLSFIRSIALLLGLLVFLFVTPSTDALFSKLAKKRTPVQEEQAPE
QKPEYTGKESANMGLQAFQDLFNNPNAMKELLKLQEDPEFMHEVEELMDD
PEFQQQVDEYLKNPSTKMGLGTLASAMSNPADVLETMDMLNDPEFAKEVE
ELMADPSFQEEMKKMAETPLFAEVIEKAKIMAVGPPSFPRSLPPFLPLSI
D*
back to top

protein sequence of NO10G00900.3

>NO10G00900.3-protein ID=NO10G00900.3-protein|Name=NO10G00900.3|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MSRTAPLSFIRSIALLLGLLVFLFVTPSTDALFSKLAKKRTPVQEEQAPE
QKPEYTGKESANMGLQAFQDLFNNPNAMKELLKLQEDPEFMHEVEELMDD
PEFQQQVDEYLKNPSTKMGLGTLASAMSNPADVLETMDMLNDPEFAKEVE
ELVRVWGGIGVYETR*
back to top
Synonyms
Publications