NO10G00900.2, NO10G00900.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00900.2
Unique NameNO10G00900.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length811
Alignment locationchr10:285347..287205 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:285347..287205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00900.2 vs.
Match: EWM25318.1 (Heat shock chaperonin-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 134.4 bits (337), Expect = 3.900e-28
Identity = 98/236 (41.53%), Postives = 131/236 (55.51%), Query Frame = 0 
Query:    1 MSRTAPLSFIRSIALLLGLLVFLFVTPSTDALFSKLAKKRTPVQEEQAPEQKPEYTGKESANMGLQAFQDLFNNPNAMKELLKLQEDPEFMHEVEELMDDPEFQQQVDEYLKNPSTKMGLGTLASAMSNPADVLETMD------MLNDPEFAKE-----VEELMA-----------------------------DPSFQEEMKKMAETPLFAEVIEKAKIMAVGPPSFPRSLPPFL 197
            MSR  P SF+R +ALLLG+LV   V+ S DALFSKLAKK+   Q+EQ  E+K  +TG ESANMGL+AFQDLF NP+ M+EL+ +Q+DPE M EVE L++DPEFQ  + EY+ + + K  L  +A  ++N    LE         M  + E   E     +E L A                             DP FQ EMKKMAE+P+FAE +++A+ +       P  L  F+
Sbjct:    1 MSR--PASFLRPVALLLGVLVLFLVSSSADALFSKLAKKKK--QQEQQHEEKA-FTGTESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEFQAYMAEYMNSDAVKESL-KMAEKLANDPKALEAFQSKMLAAMQGNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKMAESPMFAEAMQQAQALTEELQKDPAKLEAFM 230
The following BLAST results are available for this feature:
BLAST of NO10G00900.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25318.13.900e-2841.53Heat shock chaperonin-binding protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00900NO10G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00900.2NO10G00900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00900.2.cds1NO10G00900.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00900.2.cds2NO10G00900.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00900.2.cds3NO10G00900.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00900.2.cds4NO10G00900.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00900.2.cds5NO10G00900.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00900.2 ID=NO10G00900.2|Name=NO10G00900.2|organism=Nannochloropsis oceanica|type=mRNA|length=811bp
ACAGTAAATCTCAACCATGAGCCGCACCGCCCCCCTCTCTTTCATCCGGT
CCATCGCCCTGCTCCTTGGGCTTCTCGTCTTCCTCTTTGTGACCCCCTCT
ACGGACGCCCTGTTTAGCAAGCTGGCCAAAAAAAGGACACCTGTACAAGA
GGAGCAGGCGCCGGAGCAGAAACCGGAATACACGGGCAAAGAGAGTGCAA
ATATGGGACTTCAGGCCTTCCAGGACCTTTTCAACAACCCCAACGCCATG
AAAGAGCTGTTGAAGTTGCAGGAAGACCCGGAGTTTATGCATGAGGTGGA
AGAGCTGATGGATGACCCTGAATTCCAGCAACAAGTCGACGAGTACTTGA
AGAACCCGTCCACAAAAATGGGGCTGGGCACCCTGGCCTCGGCCATGTCA
AATCCCGCGGATGTGCTGGAGACCATGGACATGCTCAATGACCCGGAGTT
TGCAAAGGAGGTGGAGGAGCTGATGGCCGACCCCTCGTTTCAGGAGGAAA
TGAAGAAGATGGCCGAGACGCCTCTATTCGCCGAAGTCATTGAAAAGGCC
AAAATCATGGCGGTAGGCCCTCCCTCCTTTCCTCGCTCCCTTCCTCCCTT
CCTCCCTCTTTCCATCGATTGACGAGCTTCAAAAAGACCCGGCGGAGGTG
GAGAAGTTCTTGCAGAACGTAAGGGAAGAGATGGGCAAGTCACCTGAGTC
GGCAGAGGGGCTGCTGGCGGGCGGCGGGAAAGACGAGCTTTAGAGAAGAA
ATGGAGGGATGGAGGGAGGGAAGGAGGGAGGAGCTTTAGAGAAGGAGGAG
GGCGGGAGGGC
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protein sequence of NO10G00900.2

>NO10G00900.2-protein ID=NO10G00900.2-protein|Name=NO10G00900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MSRTAPLSFIRSIALLLGLLVFLFVTPSTDALFSKLAKKRTPVQEEQAPE
QKPEYTGKESANMGLQAFQDLFNNPNAMKELLKLQEDPEFMHEVEELMDD
PEFQQQVDEYLKNPSTKMGLGTLASAMSNPADVLETMDMLNDPEFAKEVE
ELMADPSFQEEMKKMAETPLFAEVIEKAKIMAVGPPSFPRSLPPFLPLSI
D*
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mRNA from alignment at chr10:285347..287205+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00900.2 ID=NO10G00900.2|Name=NO10G00900.2|organism=Nannochloropsis oceanica|type=mRNA|length=1859bp|location=Sequence derived from alignment at chr10:285347..287205+ (Nannochloropsis oceanica)
ACAGTAAATCTCAACCATGAGCCGCACCGCCCCCCTCTCTTTCATCCGGT
CCATCGCCCTGCTCCTTGGGCTTCTCGTCTTCCTCTTTGTGACCCCCTCT
ACGGACGCCCTGTTTAGCAAGCTGGCCAAAAAAAGGACACCTGTACAAGA
GGAGCAGGCGCCGGAGCAGAAACCGGAATACACGGGCAAAGAGAGTGCAA
ATATGGGACTTCAGGCCTTCCAGGACCTTTGTACGTAACGATGATTGATG
ATGAGATTTATTTGTCTTGTGCATGATCGATCCTTGTAATGTGACGGGCG
AAGGTGACGGTTACGAATGTGTGTATAATGTGCAGATAGCGACTCATGGA
GTGCTTTGCGCAAGAAGAAGTTTGATGCTTGTCCCTTGATCTGTGATGGA
GCCATCGCATCCACAACTTTTCCTACTTCCCACACTCCATCCATGCTGCC
TCCTGTCTCCAATCCGGCCCTGAAAAATGCGCGCTGCTGTGACCCCTATG
CTTACCTCTCTTCCTCCATTCCTCCCTCCCTATCTTTCTGTTCCTCGCAG
TCAACAACCCCAACGCCATGAAAGAGCTGTTGAAGTTGCAGGAAGACCCG
GAGTTTATGCATGAGGTGGAAGAGCTGATGGATGACCCTGAATTCCAGCA
ACAAGTCGACGAGTAAGTCCTCCCTTTCCCTACTTCCTTCCTTGTCCTCG
TTTCCTCCCTTTTGCCTTGCTTCTTCTTCCCTCCTCCCTGCCCTCTCTCC
CTCCTTTCCTGCCCCTCCCTCCCTCCTTCCCTGCCCCTCCTTTCCTCTAG
CCCCCCCCCTTCCCAAGGTTTTTGAAAAATCCGTCGACAAAGATGCCACT
GGGTACTTTGACATGCGTGCGTCATTGAGTCGCTCAACCCCTCTTCCCTT
CCCTCCCTTCCTCCCTCCCCCCCGAAGGTACTTGAAGAACCCGTCCACAA
AAATGGGGCTGGGCACCCTGGCCTCGGCCATGTCAAATCCCGCGGATGTG
CTGGAGACCATGGACATGCTCAATGACCCGGAGTTTGCAAAGGAGGTGGA
GGAGCTGGTACGTGTGTGGGGGGGGATTGGCGTGTATGAGACAAGATAAT
TGTGGGAGATGACTGTGAAGGTATAATCGCATTACCGTGAGGGATTGGCG
CGTGTACTGGGATTAGTGTGTGAGATGAGTGTGTGGGATTACCGCCTGGG
ATAACCGAGTGTGACGGGACTGGGGTGTGTGTGTGCAATCACATGTGGGG
ATAACGTGTGTGACCGATGTCCATCCGTCTGTCTGTCTGATCCAACTAAT
TACTCTTTCCATTTTCCTCCTTTAACACCACCAACCCCCACTCCTTCCCT
CTTCTACTCCCTCCTTCCTTTCCTCCCTCCTCAGATGGCCGACCCCTCGT
TTCAGGAGGAAATGAAGAAGATGGCCGAGACGCCTCTATTCGCCGAAGTC
ATTGAAAAGGCCAAAATCATGGCGGTAGGCCCTCCCTCCTTTCCTCGCTC
CCTTCCTCCCTTCCTCCCTCTTTCCATCGATTGTACGGCTTACCCCTCCC
TCCTTCCCCCCCCCCCCCCCTCCTCAAACAAAAGGAACATCTTCCTCACG
GACATGCATGAGGCTGCAACAACAAACCGCCTCTCACCCCCTCCTCTCTC
CCCCCCTCCCTAAACCAGGACGAGCTTCAAAAAGACCCGGCGGAGGTGGA
GAAGTTCTTGCAGAACGTAAGGGAAGAGATGGGCAAGTCACCTGAGTCGG
CAGAGGGGCTGCTGGCGGGCGGCGGGAAAGACGAGCTTTAGAGAAGAAAT
GGAGGGATGGAGGGAGGGAAGGAGGGAGGAGCTTTAGAGAAGGAGGAGGG
CGGGAGGGC
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Coding sequence (CDS) from alignment at chr10:285347..287205+

>NO10G00900.2 ID=NO10G00900.2|Name=NO10G00900.2|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr10:285347..287205+ (Nannochloropsis oceanica)
ATGAGCCGCACCGCCCCCCTCTCTTTCATCCGGTCCATCGCCCTGCTCCT
TGGGCTTCTCGTCTTCCTCTTTGTGACCCCCTCTACGGACGCCCTGTTTA
GCAAGCTGGCCAAAAAAAGGACACCTGTACAAGAGGAGCAGGCGCCGGAG
CAGAAACCGGAATACACGGGCAAAGAGAGTGCAAATATGGGACTTCAGGC
CTTCCAGGACCTTTTCAACAACCCCAACGCCATGAAAGAGCTGTTGAAGT
TGCAGGAAGACCCGGAGTTTATGCATGAGGTGGAAGAGCTGATGGATGAC
CCTGAATTCCAGCAACAAGTCGACGAGTACTTGAAGAACCCGTCCACAAA
AATGGGGCTGGGCACCCTGGCCTCGGCCATGTCAAATCCCGCGGATGTGC
TGGAGACCATGGACATGCTCAATGACCCGGAGTTTGCAAAGGAGGTGGAG
GAGCTGATGGCCGACCCCTCGTTTCAGGAGGAAATGAAGAAGATGGCCGA
GACGCCTCTATTCGCCGAAGTCATTGAAAAGGCCAAAATCATGGCGGTAG
GCCCTCCCTCCTTTCCTCGCTCCCTTCCTCCCTTCCTCCCTCTTTCCATC
GATTGA
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Synonyms
Publications