NO10G00900.3, NO10G00900.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00900.3
Unique NameNO10G00900.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1138
Alignment locationchr10:285347..287205 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:285347..287205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00900.3 vs.
Match: EWM25318.1 (Heat shock chaperonin-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 122.9 bits (307), Expect = 9.600e-25
Identity = 84/193 (43.52%), Postives = 108/193 (55.96%), Query Frame = 0 
Query:    1 MSRTAPLSFIRSIALLLGLLVFLFVTPSTDALFSKLAKKRTPVQEEQAPEQKPEYTGKESANMGLQAFQDLFNNPNAMKELLKLQEDPEFMHEVEELMDDPEFQQQVDEYLKNPSTKMGLGTLASAMSNPADVLE----------------------------------------TMDMLNDPEFAKEVEELV 154
            MSR  P SF+R +ALLLG+LV   V+ S DALFSKLAKK+   Q+EQ  E+K  +TG ESANMGL+AFQDLF NP+ M+EL+ +Q+DPE M EVE L++DPEFQ  + EY+ + + K  L  +A  ++N    LE                                         MDML DP   KEVE L+
Sbjct:    1 MSR--PASFLRPVALLLGVLVLFLVSSSADALFSKLAKKKK--QQEQQHEEKA-FTGTESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEFQAYMAEYMNSDAVKESL-KMAEKLANDPKALEAFQSKMLAAMQGNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLM 187
The following BLAST results are available for this feature:
BLAST of NO10G00900.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25318.19.600e-2543.52Heat shock chaperonin-binding protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00900NO10G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00900.3NO10G00900.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00900.3.cds1NO10G00900.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00900.3.cds2NO10G00900.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00900.3.cds3NO10G00900.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00900.3 ID=NO10G00900.3|Name=NO10G00900.3|organism=Nannochloropsis oceanica|type=mRNA|length=1138bp
ACAGTAAATCTCAACCATGAGCCGCACCGCCCCCCTCTCTTTCATCCGGT
CCATCGCCCTGCTCCTTGGGCTTCTCGTCTTCCTCTTTGTGACCCCCTCT
ACGGACGCCCTGTTTAGCAAGCTGGCCAAAAAAAGGACACCTGTACAAGA
GGAGCAGGCGCCGGAGCAGAAACCGGAATACACGGGCAAAGAGAGTGCAA
ATATGGGACTTCAGGCCTTCCAGGACCTTTTCAACAACCCCAACGCCATG
AAAGAGCTGTTGAAGTTGCAGGAAGACCCGGAGTTTATGCATGAGGTGGA
AGAGCTGATGGATGACCCTGAATTCCAGCAACAAGTCGACGAGTACTTGA
AGAACCCGTCCACAAAAATGGGGCTGGGCACCCTGGCCTCGGCCATGTCA
AATCCCGCGGATGTGCTGGAGACCATGGACATGCTCAATGACCCGGAGTT
TGCAAAGGAGGTGGAGGAGCTGGTACGTGTGTGGGGGGGGATTGGCGTGT
ATGAGACAAGATAATTGTGGGAGATGACTGTGAAGGTATAATCGCATTAC
CGTGAGGGATTGGCGCGTGTACTGGGATTAGTGTGTGAGATGAGTGTGTG
GGATTACCGCCTGGGATAACCGAGTGTGACGGGACTGGGGTGTGTGTGTG
CAATCACATGTGGGGATAACGTGTGTGACCGATGTCCATCCGTCTGTCTG
TCTGATCCAACTAATTACTCTTTCCATTTTCCTCCTTTAACACCACCAAC
CCCCACTCCTTCCCTCTTCTACTCCCTCCTTCCTTTCCTCCCTCCTCAGA
TGGCCGACCCCTCGTTTCAGGAGGAAATGAAGAAGATGGCCGAGACGCCT
CTATTCGCCGAAGTCATTGAAAAGGCCAAAATCATGGCGGTAGGCCCTCC
CTCCTTTCCTCGCTCCCTTCCTCCCTTCCTCCCTCTTTCCATCGATTGAC
GAGCTTCAAAAAGACCCGGCGGAGGTGGAGAAGTTCTTGCAGAACGTAAG
GGAAGAGATGGGCAAGTCACCTGAGTCGGCAGAGGGGCTGCTGGCGGGCG
GCGGGAAAGACGAGCTTTAGAGAAGAAATGGAGGGATGGAGGGAGGGAAG
GAGGGAGGAGCTTTAGAGAAGGAGGAGGGCGGGAGGGC
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protein sequence of NO10G00900.3

>NO10G00900.3-protein ID=NO10G00900.3-protein|Name=NO10G00900.3|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MSRTAPLSFIRSIALLLGLLVFLFVTPSTDALFSKLAKKRTPVQEEQAPE
QKPEYTGKESANMGLQAFQDLFNNPNAMKELLKLQEDPEFMHEVEELMDD
PEFQQQVDEYLKNPSTKMGLGTLASAMSNPADVLETMDMLNDPEFAKEVE
ELVRVWGGIGVYETR*
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mRNA from alignment at chr10:285347..287205+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00900.3 ID=NO10G00900.3|Name=NO10G00900.3|organism=Nannochloropsis oceanica|type=mRNA|length=1859bp|location=Sequence derived from alignment at chr10:285347..287205+ (Nannochloropsis oceanica)
ACAGTAAATCTCAACCATGAGCCGCACCGCCCCCCTCTCTTTCATCCGGT
CCATCGCCCTGCTCCTTGGGCTTCTCGTCTTCCTCTTTGTGACCCCCTCT
ACGGACGCCCTGTTTAGCAAGCTGGCCAAAAAAAGGACACCTGTACAAGA
GGAGCAGGCGCCGGAGCAGAAACCGGAATACACGGGCAAAGAGAGTGCAA
ATATGGGACTTCAGGCCTTCCAGGACCTTTGTACGTAACGATGATTGATG
ATGAGATTTATTTGTCTTGTGCATGATCGATCCTTGTAATGTGACGGGCG
AAGGTGACGGTTACGAATGTGTGTATAATGTGCAGATAGCGACTCATGGA
GTGCTTTGCGCAAGAAGAAGTTTGATGCTTGTCCCTTGATCTGTGATGGA
GCCATCGCATCCACAACTTTTCCTACTTCCCACACTCCATCCATGCTGCC
TCCTGTCTCCAATCCGGCCCTGAAAAATGCGCGCTGCTGTGACCCCTATG
CTTACCTCTCTTCCTCCATTCCTCCCTCCCTATCTTTCTGTTCCTCGCAG
TCAACAACCCCAACGCCATGAAAGAGCTGTTGAAGTTGCAGGAAGACCCG
GAGTTTATGCATGAGGTGGAAGAGCTGATGGATGACCCTGAATTCCAGCA
ACAAGTCGACGAGTAAGTCCTCCCTTTCCCTACTTCCTTCCTTGTCCTCG
TTTCCTCCCTTTTGCCTTGCTTCTTCTTCCCTCCTCCCTGCCCTCTCTCC
CTCCTTTCCTGCCCCTCCCTCCCTCCTTCCCTGCCCCTCCTTTCCTCTAG
CCCCCCCCCTTCCCAAGGTTTTTGAAAAATCCGTCGACAAAGATGCCACT
GGGTACTTTGACATGCGTGCGTCATTGAGTCGCTCAACCCCTCTTCCCTT
CCCTCCCTTCCTCCCTCCCCCCCGAAGGTACTTGAAGAACCCGTCCACAA
AAATGGGGCTGGGCACCCTGGCCTCGGCCATGTCAAATCCCGCGGATGTG
CTGGAGACCATGGACATGCTCAATGACCCGGAGTTTGCAAAGGAGGTGGA
GGAGCTGGTACGTGTGTGGGGGGGGATTGGCGTGTATGAGACAAGATAAT
TGTGGGAGATGACTGTGAAGGTATAATCGCATTACCGTGAGGGATTGGCG
CGTGTACTGGGATTAGTGTGTGAGATGAGTGTGTGGGATTACCGCCTGGG
ATAACCGAGTGTGACGGGACTGGGGTGTGTGTGTGCAATCACATGTGGGG
ATAACGTGTGTGACCGATGTCCATCCGTCTGTCTGTCTGATCCAACTAAT
TACTCTTTCCATTTTCCTCCTTTAACACCACCAACCCCCACTCCTTCCCT
CTTCTACTCCCTCCTTCCTTTCCTCCCTCCTCAGATGGCCGACCCCTCGT
TTCAGGAGGAAATGAAGAAGATGGCCGAGACGCCTCTATTCGCCGAAGTC
ATTGAAAAGGCCAAAATCATGGCGGTAGGCCCTCCCTCCTTTCCTCGCTC
CCTTCCTCCCTTCCTCCCTCTTTCCATCGATTGTACGGCTTACCCCTCCC
TCCTTCCCCCCCCCCCCCCCTCCTCAAACAAAAGGAACATCTTCCTCACG
GACATGCATGAGGCTGCAACAACAAACCGCCTCTCACCCCCTCCTCTCTC
CCCCCCTCCCTAAACCAGGACGAGCTTCAAAAAGACCCGGCGGAGGTGGA
GAAGTTCTTGCAGAACGTAAGGGAAGAGATGGGCAAGTCACCTGAGTCGG
CAGAGGGGCTGCTGGCGGGCGGCGGGAAAGACGAGCTTTAGAGAAGAAAT
GGAGGGATGGAGGGAGGGAAGGAGGGAGGAGCTTTAGAGAAGGAGGAGGG
CGGGAGGGC
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Coding sequence (CDS) from alignment at chr10:285347..287205+

>NO10G00900.3 ID=NO10G00900.3|Name=NO10G00900.3|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr10:285347..287205+ (Nannochloropsis oceanica)
ATGAGCCGCACCGCCCCCCTCTCTTTCATCCGGTCCATCGCCCTGCTCCT
TGGGCTTCTCGTCTTCCTCTTTGTGACCCCCTCTACGGACGCCCTGTTTA
GCAAGCTGGCCAAAAAAAGGACACCTGTACAAGAGGAGCAGGCGCCGGAG
CAGAAACCGGAATACACGGGCAAAGAGAGTGCAAATATGGGACTTCAGGC
CTTCCAGGACCTTTTCAACAACCCCAACGCCATGAAAGAGCTGTTGAAGT
TGCAGGAAGACCCGGAGTTTATGCATGAGGTGGAAGAGCTGATGGATGAC
CCTGAATTCCAGCAACAAGTCGACGAGTACTTGAAGAACCCGTCCACAAA
AATGGGGCTGGGCACCCTGGCCTCGGCCATGTCAAATCCCGCGGATGTGC
TGGAGACCATGGACATGCTCAATGACCCGGAGTTTGCAAAGGAGGTGGAG
GAGCTGGTACGTGTGTGGGGGGGGATTGGCGTGTATGAGACAAGATAA
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Synonyms
Publications