NO10G00150, NO10G00150 (gene) Nannochloropsis oceanica

Overview
NameNO10G00150
Unique NameNO10G00150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2655
Alignment locationchr10:46235..48889 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:46235..48889 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016031Trp_RNA-bd_attenuator-like_dom
IPR002838AIM24
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
The following BLAST results are available for this feature:
BLAST of NO10G00150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL055nonsL055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR091ncniR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007672NSK007672Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00150.3NO10G00150.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G00150.2NO10G00150.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G00150.1NO10G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|387277gene_10809Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100089g3gene5266Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00150.3NO10G00150.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G00150.2NO10G00150.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G00150.1NO10G00150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00150 ID=NO10G00150|Name=NO10G00150|organism=Nannochloropsis oceanica|type=gene|length=2655bp
AAACACAGGCACTGGCGGGGCGCACCAACGATTTCCCAAAACTCCACATC
CTCCAGCCAGTCGTCATCCATAAATCATGCCTTGCCTCCTGCCCGCTCAC
CTCCTGCCGGCACTCCTTCTCCTTAGCACTGTCGCCGACGCCACCCTCCA
AATGTCCGTGCTCTCCCCCGGGACACCTCAAGCTTGCCTTCAAGTACACT
TCGAGCCGGGCAAGGATGACCACTCGTCGTTACACATCGACTTGCGTGCG
CTTGTGAGCCGCTCAGGCACCTTGTCCCTCACCCCCTCCTCCTCATCCTC
CTCTACTTCTTCTTCCTCCTCATTGTCATCTCAGCCAGCATGGCGGCCAG
GGCAACCACCACCACAGCAGCAACATCAGCAAATATTTTCTTCATATCCT
TCTTCCCTTCAACCCTCCCTCGCCCGTCTCTCTCTCTCCCAACGTGGCGG
CAAAGGCGGGCATGTCATCCTCGCGCCCGAGGCCCCAGGGGACGTAATTG
TCTGCCACTTTTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTTGTCTCCTTCACCCGTACCGGCCCTGGTGGTGGT
GCGGGGCGCGTCCGTCCTCGCCCGCGAAGGTGGGGTGGTTGTAGGAGAGG
TAGCAGATAAGGGTCTTCTCAAGACGCTTGAAACCGTGACTCGAGAACGA
GAGAAGGAACGAGCACGCGCTGGAGGCCATCAGTTCTCACAGCAGCAACA
CCAAGGTCAGCCGTTGCTGCAGAGATATTCGGGGAATGgtacggcaaggg
ggaggaagggagggagggagggagggaggaagaaagagagaattgcgagc
ttgcttgtcctaggtcactcacattcctggtatcgtcttctttgtgctcc
aactggagtgtacaagtgcccacgacgtaaattgccgtcgctgtgacttg
acacaactcttccgcattcctcatccactcctccctccctccctccctcc
ttccgtccctccccaaatccttccacagGAAATCTGGCGCTCTCCGCCTT
CGGCTCCATCATCCGCGTGGATCTGCGGGAAGGAGACGAGCGGGTGGTGA
AGGCGGGTCATGTCTTGGCGTGGACGGAGGCCACTCGGGTCAGCTTCGgt
cggtcggacgggagggagggagggagagagggagggaaggagggagggga
tgagaaaggggagccgacgcgtcatagaaggccataatccgccatttttt
tttcactgaaatattccctgttatttttctacacatctacagGCGCCAGT
TCAGCCTCCTCCTCCCTCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCCC
CCCCTCCTCCTCCTCCTCCAACGGCGTTTACACTTTAACAGGCCCTGGTG
TCATCTACCTTCGTTCTCACTCGCCCTCTGCCTTCCGCAAGTGGGCCTCA
GCCGGTGCGGCTATCCTCAAAGCTGATGCCAGCAGCATGATCCCCTCTTC
TCTCCCTCCCTCGTCCTCGGCCCCCTCCTCCTCAGTATCGGCGTATAAAG
GCGGAAGGGACGGAGGGGAGGCAGCAGCAGCCCTACTTGGCAGTGAGGGT
TTGGGGAAGCGGTTGAAGAAAAGGATAGGAAGgtgagagagggacggagg
gaggcaaagagggacggaggaaggcaggaagggtaggggggaggttgatg
gcttggaacactgaccgggacgcaccaaccattttctccctccgtctctc
tctcccctccccctcctttgtccagCTTGATGGTCACCTGTCTGTCCGCC
CTCCTCTTCGTGGCGGGGATGCAGGTGCTCCAAGCCCTGCTGATGGAGGG
CCCGGATGGATTGAAACATGTCCCCAGAAATCTCCTGCTATTGCTACAGg
tagctagctacacgccctccctccctccctccttccttccttttctctga
tcagcccagtaccaagcactgtccatgctccatacgcagccaaggcctct
gatttcgttctactgctgccgtttctctccctcccccccctcctttgcct
cactctccccttccccccctccgtcgcggtatacaagccggtgctggctg
tcatgataagcgaggcctgtgtggacattggcaaatcattcgcttctcct
ttcttctccctctctcctccctccctccctccctttctcctccagGGCCT
GCAAGCCGGCGCTGTAAAGGTGGGCGAGGCTCTTGTCGACCTGTATCAGT
CTGATGTCTGGAGAAGAGCACGGGGGGCTTTATCCTCTGCTGCTGCTGCT
GCTTCTGCTGCTGCTGCCGCTGGTGATGGTCGTATGGATAACGGAGAGGA
GCAAGGAAAGAAGTGTACGGCGGGTACCAGGAAAGGAGAGGAGAAGGGTT
TCGGGTGGGGAGGGGGTGGAGGGCAAGAGATCAAGGGAGAAGGGGGCTGG
GAGGAGTCGTTGCCTTTGAGATGAGAAGGAGGAAGGGAGGGAGGAGGGAG
GCAATCAAAGTACCGTTCAACAATCTCTTCGAGTAGGGGTTGGGCATTGC
CTTTCCGTGACAATCACTAACAGCCAAGGAAACGCGCGAATAATACTGCA
TAAAAACACATTTAATGTAATACTAAAATTATATTAAAACAACATATGAT
GATAT
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protein sequence of NO10G00150.3

>NO10G00150.3-protein ID=NO10G00150.3-protein|Name=NO10G00150.3|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MPCLLPAHLLPALLLLSTVADATLQMSVLSPGTPQACLQVHFEPGKDDHS
SLHIDLRALVSRSGTLSLTPSSSSSSTSSSSSLSSQPAWRPGQPPPQQQH
QQIFSSYPSSLQPSLARLSLSQRGGKGGHVILAPEAPGDVIVCHFSSSSS
SSSSSSSSSSSSSLSPSPVPALVVVRGASVLAREGGVVVGEVADKGLLKT
LETVTREREKERARAGGHQFSQQQHQGQPLLQRYSGNGNLALSAFGSIIR
VDLREGDERVVKAGHVLAWTEATRVSFGASSASSSLSSSSPSPSSPPPSS
SSSNGVYTLTGPGVIYLRSHSPSAFRKWASAGAAILKADASSMIPSSLPP
SSSAPSSSVSAYKGGRDGGEAAAALLGSEGLGKRLKKRIGSLMVTCLSAL
LFVAGMQVLQALLMEGPDGLKHVPRNLLLLLQGLQAGAVKVGEALVDLYQ
SDVWRRARGALSSAAAAASAAAAAGDGRMDNGEEQGKKCTAGTRKGEEKG
FGWGGGGGQEIKGEGGWEESLPLR*
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protein sequence of NO10G00150.2

>NO10G00150.2-protein ID=NO10G00150.2-protein|Name=NO10G00150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MPCLLPAHLLPALLLLSTVADATLQMSVLSPGTPQACLQVHFEPGKDDHS
SLHIDLRALVSRSGTLSLTPSSSSSSTSSSSSLSSQPAWRPGQPPPQQQH
QQIFSSYPSSLQPSLARLSLSQRGGKGGHVILAPEAPGDVIVCHFSSSSS
SSSSSSSSSSSSSLSPSPVPALVVVRGASVLAREGGVVVGEVADKGLLKT
LETVTREREKERARAGGHQFSQQQHQGQPLLQRYSGNGNLALSAFGSIIR
VDLREGDERVVKAGHVLAWTEATRVSFGASSASSSLSSSSPSPSSPPPSS
SSSNGVYTLTGPGVIYLRSHSPSAFRKWASAGAAILKADASSMIPSSLPP
SSSAPSSSVSAYKGGRDGGEAAAALLGSEGLGKRLKKRIGSLMVTCLSAL
LFVAGMQVLQALLMEGPDGLKHVPRNLLLLLQVASYTPSLPPSFLPFL*
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protein sequence of NO10G00150.1

>NO10G00150.1-protein ID=NO10G00150.1-protein|Name=NO10G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MPCLLPAHLLPALLLLSTVADATLQMSVLSPGTPQACLQVHFEPGKDDHS
SLHIDLRALVSRSGTLSLTPSSSSSSTSSSSSLSSQPAWRPGQPPPQQQH
QQIFSSYPSSLQPSLARLSLSQRGGKGGHVILAPEAPGDVIVCHFSSSSS
SSSSSSSSSSSSSLSPSPVPALVVVRGASVLAREGGVVVGEVADKGLLKT
LETVTREREKERARAGGHQFSQQQHQGQPLLQRYSGNGNLALSAFGSIIR
VDLREGDERVVKAGHVLAWTEATRVSFGASSASSSLSSSSPSPSSPPPSS
SSSNGVYTLTGPGVIYLRSHSPSAFRKWASAGAAILKADASSMIPSSLPP
SSSAPSSSVSAYKGGRDGGEAAAALLGSEGLGKRLKKRIGR*
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Synonyms
Publications