NO10G00150.2, NO10G00150.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00150.2
Unique NameNO10G00150.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2052
Alignment locationchr10:46235..48813 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:46235..48813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00150.2 vs.
Match: EWM25235.1 (hypothetical protein Naga_100089g3 [Nannochloropsis gaditana])

HSP 1 Score: 82.0 bits (201), Expect = 5.100e-12
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 0 
Query:  341 SSMIPSSLPPSSSAPSSSVSAY--KGGRDGGEAAAA-LLGSEGLGKRLKKRIGSLMVTCLSALLFVAGMQVLQALLMEGPDGLKHVPRNLLLLLQ 433
            +S  P ++  SS APS        +  R+G EA  A  +G EGLGKRLK +I SL+  CLSALLFVAG+QV QALLMEGP+GLK VPRN++LLL+
Sbjct:    2 ASASPPAVASSSLAPSGEKRERMKEREREGSEAMVADWMGREGLGKRLKWKIRSLLAACLSALLFVAGIQVAQALLMEGPEGLKDVPRNIMLLLR 96
The following BLAST results are available for this feature:
BLAST of NO10G00150.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25235.15.100e-1256.84hypothetical protein Naga_100089g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00150NO10G00150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00150.2NO10G00150.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00150.2.cds1NO10G00150.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00150.2.cds2NO10G00150.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00150.2.cds3NO10G00150.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00150.2.cds4NO10G00150.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00150.2 ID=NO10G00150.2|Name=NO10G00150.2|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp
ATGCCTTGCCTCCTGCCCGCTCACCTCCTGCCGGCACTCCTTCTCCTTAG
CACTGTCGCCGACGCCACCCTCCAAATGTCCGTGCTCTCCCCCGGGACAC
CTCAAGCTTGCCTTCAAGTACACTTCGAGCCGGGCAAGGATGACCACTCG
TCGTTACACATCGACTTGCGTGCGCTTGTGAGCCGCTCAGGCACCTTGTC
CCTCACCCCCTCCTCCTCATCCTCCTCTACTTCTTCTTCCTCCTCATTGT
CATCTCAGCCAGCATGGCGGCCAGGGCAACCACCACCACAGCAGCAACAT
CAGCAAATATTTTCTTCATATCCTTCTTCCCTTCAACCCTCCCTCGCCCG
TCTCTCTCTCTCCCAACGTGGCGGCAAAGGCGGGCATGTCATCCTCGCGC
CCGAGGCCCCAGGGGACGTAATTGTCTGCCACTTTTCCTCCTCCTCCTCC
TCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGTCTCCTTC
ACCCGTACCGGCCCTGGTGGTGGTGCGGGGCGCGTCCGTCCTCGCCCGCG
AAGGTGGGGTGGTTGTAGGAGAGGTAGCAGATAAGGGTCTTCTCAAGACG
CTTGAAACCGTGACTCGAGAACGAGAGAAGGAACGAGCACGCGCTGGAGG
CCATCAGTTCTCACAGCAGCAACACCAAGGTCAGCCGTTGCTGCAGAGAT
ATTCGGGGAATGGAAATCTGGCGCTCTCCGCCTTCGGCTCCATCATCCGC
GTGGATCTGCGGGAAGGAGACGAGCGGGTGGTGAAGGCGGGTCATGTCTT
GGCGTGGACGGAGGCCACTCGGGTCAGCTTCGGCGCCAGTTCAGCCTCCT
CCTCCCTCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCCCCCCCTCCTCC
TCCTCCTCCAACGGCGTTTACACTTTAACAGGCCCTGGTGTCATCTACCT
TCGTTCTCACTCGCCCTCTGCCTTCCGCAAGTGGGCCTCAGCCGGTGCGG
CTATCCTCAAAGCTGATGCCAGCAGCATGATCCCCTCTTCTCTCCCTCCC
TCGTCCTCGGCCCCCTCCTCCTCAGTATCGGCGTATAAAGGCGGAAGGGA
CGGAGGGGAGGCAGCAGCAGCCCTACTTGGCAGTGAGGGTTTGGGGAAGC
GGTTGAAGAAAAGGATAGGAAGCTTGATGGTCACCTGTCTGTCCGCCCTC
CTCTTCGTGGCGGGGATGCAGGTGCTCCAAGCCCTGCTGATGGAGGGCCC
GGATGGATTGAAACATGTCCCCAGAAATCTCCTGCTATTGCTACAGGTAG
CTAGCTACACGCCCTCCCTCCCTCCCTCCTTCCTTCCTTTTCTCTGATCA
GCCCAGTACCAAGCACTGTCCATGCTCCATACGCAGCCAAGGCCTCTGAT
TTCGTTCTACTGCTGCCGTTTCTCTCCCTCCCCCCCCTCCTTTGCCTCAC
TCTCCCCTTCCCCCCCTCCGTCGCGGTATACAAGCCGGTGCTGGCTGTCA
TGATAAGCGAGGCCTGTGTGGACATTGGCAAATCATTCGCTTCTCCTTTC
TTCTCCCTCTCTCCTCCCTCCCTCCCTCCCTTTCTCCTCCAGGGCCTGCA
AGCCGGCGCTGTAAAGGTGGGCGAGGCTCTTGTCGACCTGTATCAGTCTG
ATGTCTGGAGAAGAGCACGGGGGGCTTTATCCTCTGCTGCTGCTGCTGCT
TCTGCTGCTGCTGCCGCTGGTGATGGTCGTATGGATAACGGAGAGGAGCA
AGGAAAGAAGTGTACGGCGGGTACCAGGAAAGGAGAGGAGAAGGGTTTCG
GGTGGGGAGGGGGTGGAGGGCAAGAGATCAAGGGAGAAGGGGGCTGGGAG
GAGTCGTTGCCTTTGAGATGAGAAGGAGGAAGGGAGGGAGGAGGGAGGCA
ATCAAAGTACCGTTCAACAATCTCTTCGAGTAGGGGTTGGGCATTGCCTT
TCCGTGACAATCACTAACAGCCAAGGAAACGCGCGAATAATACTGCATAA
AAACACATTTAATGTAATACTAAAATTATATTAAAACAACATATGATGAT
AT
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protein sequence of NO10G00150.2

>NO10G00150.2-protein ID=NO10G00150.2-protein|Name=NO10G00150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MPCLLPAHLLPALLLLSTVADATLQMSVLSPGTPQACLQVHFEPGKDDHS
SLHIDLRALVSRSGTLSLTPSSSSSSTSSSSSLSSQPAWRPGQPPPQQQH
QQIFSSYPSSLQPSLARLSLSQRGGKGGHVILAPEAPGDVIVCHFSSSSS
SSSSSSSSSSSSSLSPSPVPALVVVRGASVLAREGGVVVGEVADKGLLKT
LETVTREREKERARAGGHQFSQQQHQGQPLLQRYSGNGNLALSAFGSIIR
VDLREGDERVVKAGHVLAWTEATRVSFGASSASSSLSSSSPSPSSPPPSS
SSSNGVYTLTGPGVIYLRSHSPSAFRKWASAGAAILKADASSMIPSSLPP
SSSAPSSSVSAYKGGRDGGEAAAALLGSEGLGKRLKKRIGSLMVTCLSAL
LFVAGMQVLQALLMEGPDGLKHVPRNLLLLLQVASYTPSLPPSFLPFL*
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mRNA from alignment at chr10:46235..48813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00150.2 ID=NO10G00150.2|Name=NO10G00150.2|organism=Nannochloropsis oceanica|type=mRNA|length=2579bp|location=Sequence derived from alignment at chr10:46235..48813- (Nannochloropsis oceanica)
ATGCCTTGCCTCCTGCCCGCTCACCTCCTGCCGGCACTCCTTCTCCTTAG
CACTGTCGCCGACGCCACCCTCCAAATGTCCGTGCTCTCCCCCGGGACAC
CTCAAGCTTGCCTTCAAGTACACTTCGAGCCGGGCAAGGATGACCACTCG
TCGTTACACATCGACTTGCGTGCGCTTGTGAGCCGCTCAGGCACCTTGTC
CCTCACCCCCTCCTCCTCATCCTCCTCTACTTCTTCTTCCTCCTCATTGT
CATCTCAGCCAGCATGGCGGCCAGGGCAACCACCACCACAGCAGCAACAT
CAGCAAATATTTTCTTCATATCCTTCTTCCCTTCAACCCTCCCTCGCCCG
TCTCTCTCTCTCCCAACGTGGCGGCAAAGGCGGGCATGTCATCCTCGCGC
CCGAGGCCCCAGGGGACGTAATTGTCTGCCACTTTTCCTCCTCCTCCTCC
TCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGTCTCCTTC
ACCCGTACCGGCCCTGGTGGTGGTGCGGGGCGCGTCCGTCCTCGCCCGCG
AAGGTGGGGTGGTTGTAGGAGAGGTAGCAGATAAGGGTCTTCTCAAGACG
CTTGAAACCGTGACTCGAGAACGAGAGAAGGAACGAGCACGCGCTGGAGG
CCATCAGTTCTCACAGCAGCAACACCAAGGTCAGCCGTTGCTGCAGAGAT
ATTCGGGGAATGGTACGGCAAGGGGGAGGAAGGGAGGGAGGGAGGGAGGG
AGGAAGAAAGAGAGAATTGCGAGCTTGCTTGTCCTAGGTCACTCACATTC
CTGGTATCGTCTTCTTTGTGCTCCAACTGGAGTGTACAAGTGCCCACGAC
GTAAATTGCCGTCGCTGTGACTTGACACAACTCTTCCGCATTCCTCATCC
ACTCCTCCCTCCCTCCCTCCCTCCTTCCGTCCCTCCCCAAATCCTTCCAC
AGGAAATCTGGCGCTCTCCGCCTTCGGCTCCATCATCCGCGTGGATCTGC
GGGAAGGAGACGAGCGGGTGGTGAAGGCGGGTCATGTCTTGGCGTGGACG
GAGGCCACTCGGGTCAGCTTCGGTCGGTCGGACGGGAGGGAGGGAGGGAG
AGAGGGAGGGAAGGAGGGAGGGGATGAGAAAGGGGAGCCGACGCGTCATA
GAAGGCCATAATCCGCCATTTTTTTTTCACTGAAATATTCCCTGTTATTT
TTCTACACATCTACAGGCGCCAGTTCAGCCTCCTCCTCCCTCTCCTCCTC
CTCCCCCTCCCCCTCCTCCCCCCCCCCCTCCTCCTCCTCCTCCAACGGCG
TTTACACTTTAACAGGCCCTGGTGTCATCTACCTTCGTTCTCACTCGCCC
TCTGCCTTCCGCAAGTGGGCCTCAGCCGGTGCGGCTATCCTCAAAGCTGA
TGCCAGCAGCATGATCCCCTCTTCTCTCCCTCCCTCGTCCTCGGCCCCCT
CCTCCTCAGTATCGGCGTATAAAGGCGGAAGGGACGGAGGGGAGGCAGCA
GCAGCCCTACTTGGCAGTGAGGGTTTGGGGAAGCGGTTGAAGAAAAGGAT
AGGAAGGTGAGAGAGGGACGGAGGGAGGCAAAGAGGGACGGAGGAAGGCA
GGAAGGGTAGGGGGGAGGTTGATGGCTTGGAACACTGACCGGGACGCACC
AACCATTTTCTCCCTCCGTCTCTCTCTCCCCTCCCCCTCCTTTGTCCAGC
TTGATGGTCACCTGTCTGTCCGCCCTCCTCTTCGTGGCGGGGATGCAGGT
GCTCCAAGCCCTGCTGATGGAGGGCCCGGATGGATTGAAACATGTCCCCA
GAAATCTCCTGCTATTGCTACAGGTAGCTAGCTACACGCCCTCCCTCCCT
CCCTCCTTCCTTCCTTTTCTCTGATCAGCCCAGTACCAAGCACTGTCCAT
GCTCCATACGCAGCCAAGGCCTCTGATTTCGTTCTACTGCTGCCGTTTCT
CTCCCTCCCCCCCCTCCTTTGCCTCACTCTCCCCTTCCCCCCCTCCGTCG
CGGTATACAAGCCGGTGCTGGCTGTCATGATAAGCGAGGCCTGTGTGGAC
ATTGGCAAATCATTCGCTTCTCCTTTCTTCTCCCTCTCTCCTCCCTCCCT
CCCTCCCTTTCTCCTCCAGGGCCTGCAAGCCGGCGCTGTAAAGGTGGGCG
AGGCTCTTGTCGACCTGTATCAGTCTGATGTCTGGAGAAGAGCACGGGGG
GCTTTATCCTCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGCCGCTGGTGA
TGGTCGTATGGATAACGGAGAGGAGCAAGGAAAGAAGTGTACGGCGGGTA
CCAGGAAAGGAGAGGAGAAGGGTTTCGGGTGGGGAGGGGGTGGAGGGCAA
GAGATCAAGGGAGAAGGGGGCTGGGAGGAGTCGTTGCCTTTGAGATGAGA
AGGAGGAAGGGAGGGAGGAGGGAGGCAATCAAAGTACCGTTCAACAATCT
CTTCGAGTAGGGGTTGGGCATTGCCTTTCCGTGACAATCACTAACAGCCA
AGGAAACGCGCGAATAATACTGCATAAAAACACATTTAATGTAATACTAA
AATTATATTAAAACAACATATGATGATAT
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Coding sequence (CDS) from alignment at chr10:46235..48813-

>NO10G00150.2 ID=NO10G00150.2|Name=NO10G00150.2|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr10:46235..48813- (Nannochloropsis oceanica)
ATGCCTTGCCTCCTGCCCGCTCACCTCCTGCCGGCACTCCTTCTCCTTAG
CACTGTCGCCGACGCCACCCTCCAAATGTCCGTGCTCTCCCCCGGGACAC
CTCAAGCTTGCCTTCAAGTACACTTCGAGCCGGGCAAGGATGACCACTCG
TCGTTACACATCGACTTGCGTGCGCTTGTGAGCCGCTCAGGCACCTTGTC
CCTCACCCCCTCCTCCTCATCCTCCTCTACTTCTTCTTCCTCCTCATTGT
CATCTCAGCCAGCATGGCGGCCAGGGCAACCACCACCACAGCAGCAACAT
CAGCAAATATTTTCTTCATATCCTTCTTCCCTTCAACCCTCCCTCGCCCG
TCTCTCTCTCTCCCAACGTGGCGGCAAAGGCGGGCATGTCATCCTCGCGC
CCGAGGCCCCAGGGGACGTAATTGTCTGCCACTTTTCCTCCTCCTCCTCC
TCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGTCTCCTTC
ACCCGTACCGGCCCTGGTGGTGGTGCGGGGCGCGTCCGTCCTCGCCCGCG
AAGGTGGGGTGGTTGTAGGAGAGGTAGCAGATAAGGGTCTTCTCAAGACG
CTTGAAACCGTGACTCGAGAACGAGAGAAGGAACGAGCACGCGCTGGAGG
CCATCAGTTCTCACAGCAGCAACACCAAGGTCAGCCGTTGCTGCAGAGAT
ATTCGGGGAATGGAAATCTGGCGCTCTCCGCCTTCGGCTCCATCATCCGC
GTGGATCTGCGGGAAGGAGACGAGCGGGTGGTGAAGGCGGGTCATGTCTT
GGCGTGGACGGAGGCCACTCGGGTCAGCTTCGGCGCCAGTTCAGCCTCCT
CCTCCCTCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCCCCCCCTCCTCC
TCCTCCTCCAACGGCGTTTACACTTTAACAGGCCCTGGTGTCATCTACCT
TCGTTCTCACTCGCCCTCTGCCTTCCGCAAGTGGGCCTCAGCCGGTGCGG
CTATCCTCAAAGCTGATGCCAGCAGCATGATCCCCTCTTCTCTCCCTCCC
TCGTCCTCGGCCCCCTCCTCCTCAGTATCGGCGTATAAAGGCGGAAGGGA
CGGAGGGGAGGCAGCAGCAGCCCTACTTGGCAGTGAGGGTTTGGGGAAGC
GGTTGAAGAAAAGGATAGGAAGCTTGATGGTCACCTGTCTGTCCGCCCTC
CTCTTCGTGGCGGGGATGCAGGTGCTCCAAGCCCTGCTGATGGAGGGCCC
GGATGGATTGAAACATGTCCCCAGAAATCTCCTGCTATTGCTACAGGTAG
CTAGCTACACGCCCTCCCTCCCTCCCTCCTTCCTTCCTTTTCTCTGA
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Synonyms
Publications