NO10G00150.3, NO10G00150.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00150.3
Unique Name	NO10G00150.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1832
Alignment location	chr10:46235..48889 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:46235..48889 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO10G00150.3 vs.
Match: EWM25235.1 (hypothetical protein Naga_100089g3 [Nannochloropsis gaditana])

HSP 1 Score: 116.7 bits (291), Expect = 2.200e-22
Identity = 92/186 (49.46%), Postives = 117/186 (62.90%), Query Frame = 0

Query:  341 SSMIPSSLPPSSSAPSSSVSAY--KGGRDGGEAAAA-LLGSEGLGKRLKKRIGSLMVTCLSALLFVAGMQVLQALLMEGPDGLKHVPRNLLLLLQGLQAGAVKVGEALVDLYQSDVWRRARGALSSAAAAASAAAAAGDGRMDNGEEQGKKCTAGTRKGEE-KGFGWGGGGGQEIKG-----EGGW 518
            +S  P ++  SS APS        +  R+G EA  A  +G EGLGKRLK +I SL+  CLSALLFVAG+QV QALLMEGP+GLK VPRN++LLL+G+Q G +K+ E LVDLY+SD+  R R A S+AAA A AAA    GR ++ +EQ  KCT      +     GW   G +E +G     EG W
Sbjct:    2 ASASPPAVASSSLAPSGEKRERMKEREREGSEAMVADWMGREGLGKRLKWKIRSLLAACLSALLFVAGIQVAQALLMEGPEGLKDVPRNIMLLLRGIQMGVMKLSEGLVDLYRSDLSHRIRAAFSTAAATAVAAAT---GRGNDTQEQ--KCTLDAGNVQSLAAEGWEKAGEREGEGLRETREGLW 182

The following BLAST results are available for this feature:

BLAST of NO10G00150.3 vs.

BLAST of NO10G00150.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25235.1	2.200e-22	49.46	hypothetical protein Naga_100089g3 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00150	NO10G00150	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00150.3	NO10G00150.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00150.3.cds1	NO10G00150.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00150.3.cds2	NO10G00150.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00150.3.cds3	NO10G00150.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00150.3.cds4	NO10G00150.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00150.3.cds5	NO10G00150.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:46235..48889-
coding sequence from alignment at chr10:46235..48889-

mRNA sequence

>NO10G00150.3 ID=NO10G00150.3|Name=NO10G00150.3|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp
AAACACAGGCACTGGCGGGGCGCACCAACGATTTCCCAAAACTCCACATC
CTCCAGCCAGTCGTCATCCATAAATCATGCCTTGCCTCCTGCCCGCTCAC
CTCCTGCCGGCACTCCTTCTCCTTAGCACTGTCGCCGACGCCACCCTCCA
AATGTCCGTGCTCTCCCCCGGGACACCTCAAGCTTGCCTTCAAGTACACT
TCGAGCCGGGCAAGGATGACCACTCGTCGTTACACATCGACTTGCGTGCG
CTTGTGAGCCGCTCAGGCACCTTGTCCCTCACCCCCTCCTCCTCATCCTC
CTCTACTTCTTCTTCCTCCTCATTGTCATCTCAGCCAGCATGGCGGCCAG
GGCAACCACCACCACAGCAGCAACATCAGCAAATATTTTCTTCATATCCT
TCTTCCCTTCAACCCTCCCTCGCCCGTCTCTCTCTCTCCCAACGTGGCGG
CAAAGGCGGGCATGTCATCCTCGCGCCCGAGGCCCCAGGGGACGTAATTG
TCTGCCACTTTTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTTGTCTCCTTCACCCGTACCGGCCCTGGTGGTGGT
GCGGGGCGCGTCCGTCCTCGCCCGCGAAGGTGGGGTGGTTGTAGGAGAGG
TAGCAGATAAGGGTCTTCTCAAGACGCTTGAAACCGTGACTCGAGAACGA
GAGAAGGAACGAGCACGCGCTGGAGGCCATCAGTTCTCACAGCAGCAACA
CCAAGGTCAGCCGTTGCTGCAGAGATATTCGGGGAATGGAAATCTGGCGC
TCTCCGCCTTCGGCTCCATCATCCGCGTGGATCTGCGGGAAGGAGACGAG
CGGGTGGTGAAGGCGGGTCATGTCTTGGCGTGGACGGAGGCCACTCGGGT
CAGCTTCGGCGCCAGTTCAGCCTCCTCCTCCCTCTCCTCCTCCTCCCCCT
CCCCCTCCTCCCCCCCCCCCTCCTCCTCCTCCTCCAACGGCGTTTACACT
TTAACAGGCCCTGGTGTCATCTACCTTCGTTCTCACTCGCCCTCTGCCTT
CCGCAAGTGGGCCTCAGCCGGTGCGGCTATCCTCAAAGCTGATGCCAGCA
GCATGATCCCCTCTTCTCTCCCTCCCTCGTCCTCGGCCCCCTCCTCCTCA
GTATCGGCGTATAAAGGCGGAAGGGACGGAGGGGAGGCAGCAGCAGCCCT
ACTTGGCAGTGAGGGTTTGGGGAAGCGGTTGAAGAAAAGGATAGGAAGCT
TGATGGTCACCTGTCTGTCCGCCCTCCTCTTCGTGGCGGGGATGCAGGTG
CTCCAAGCCCTGCTGATGGAGGGCCCGGATGGATTGAAACATGTCCCCAG
AAATCTCCTGCTATTGCTACAGGGCCTGCAAGCCGGCGCTGTAAAGGTGG
GCGAGGCTCTTGTCGACCTGTATCAGTCTGATGTCTGGAGAAGAGCACGG
GGGGCTTTATCCTCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGCCGCTGG
TGATGGTCGTATGGATAACGGAGAGGAGCAAGGAAAGAAGTGTACGGCGG
GTACCAGGAAAGGAGAGGAGAAGGGTTTCGGGTGGGGAGGGGGTGGAGGG
CAAGAGATCAAGGGAGAAGGGGGCTGGGAGGAGTCGTTGCCTTTGAGATG
AGAAGGAGGAAGGGAGGGAGGAGGGAGGCAATCAAAGTACCGTTCAACAA
TCTCTTCGAGTAGGGGTTGGGCATTGCCTTTCCGTGACAATCACTAACAG
CCAAGGAAACGCGCGAATAATACTGCATAAAAACACATTTAATGTAATAC
TAAAATTATATTAAAACAACATATGATGATAT

protein sequence of NO10G00150.3

>NO10G00150.3-protein ID=NO10G00150.3-protein|Name=NO10G00150.3|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MPCLLPAHLLPALLLLSTVADATLQMSVLSPGTPQACLQVHFEPGKDDHS
SLHIDLRALVSRSGTLSLTPSSSSSSTSSSSSLSSQPAWRPGQPPPQQQH
QQIFSSYPSSLQPSLARLSLSQRGGKGGHVILAPEAPGDVIVCHFSSSSS
SSSSSSSSSSSSSLSPSPVPALVVVRGASVLAREGGVVVGEVADKGLLKT
LETVTREREKERARAGGHQFSQQQHQGQPLLQRYSGNGNLALSAFGSIIR
VDLREGDERVVKAGHVLAWTEATRVSFGASSASSSLSSSSPSPSSPPPSS
SSSNGVYTLTGPGVIYLRSHSPSAFRKWASAGAAILKADASSMIPSSLPP
SSSAPSSSVSAYKGGRDGGEAAAALLGSEGLGKRLKKRIGSLMVTCLSAL
LFVAGMQVLQALLMEGPDGLKHVPRNLLLLLQGLQAGAVKVGEALVDLYQ
SDVWRRARGALSSAAAAASAAAAAGDGRMDNGEEQGKKCTAGTRKGEEKG
FGWGGGGGQEIKGEGGWEESLPLR*

mRNA from alignment at chr10:46235..48889-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00150.3 ID=NO10G00150.3|Name=NO10G00150.3|organism=Nannochloropsis oceanica|type=mRNA|length=2655bp|location=Sequence derived from alignment at chr10:46235..48889- (Nannochloropsis oceanica)
AAACACAGGCACTGGCGGGGCGCACCAACGATTTCCCAAAACTCCACATC
CTCCAGCCAGTCGTCATCCATAAATCATGCCTTGCCTCCTGCCCGCTCAC
CTCCTGCCGGCACTCCTTCTCCTTAGCACTGTCGCCGACGCCACCCTCCA
AATGTCCGTGCTCTCCCCCGGGACACCTCAAGCTTGCCTTCAAGTACACT
TCGAGCCGGGCAAGGATGACCACTCGTCGTTACACATCGACTTGCGTGCG
CTTGTGAGCCGCTCAGGCACCTTGTCCCTCACCCCCTCCTCCTCATCCTC
CTCTACTTCTTCTTCCTCCTCATTGTCATCTCAGCCAGCATGGCGGCCAG
GGCAACCACCACCACAGCAGCAACATCAGCAAATATTTTCTTCATATCCT
TCTTCCCTTCAACCCTCCCTCGCCCGTCTCTCTCTCTCCCAACGTGGCGG
CAAAGGCGGGCATGTCATCCTCGCGCCCGAGGCCCCAGGGGACGTAATTG
TCTGCCACTTTTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTTGTCTCCTTCACCCGTACCGGCCCTGGTGGTGGT
GCGGGGCGCGTCCGTCCTCGCCCGCGAAGGTGGGGTGGTTGTAGGAGAGG
TAGCAGATAAGGGTCTTCTCAAGACGCTTGAAACCGTGACTCGAGAACGA
GAGAAGGAACGAGCACGCGCTGGAGGCCATCAGTTCTCACAGCAGCAACA
CCAAGGTCAGCCGTTGCTGCAGAGATATTCGGGGAATGGTACGGCAAGGG
GGAGGAAGGGAGGGAGGGAGGGAGGGAGGAAGAAAGAGAGAATTGCGAGC
TTGCTTGTCCTAGGTCACTCACATTCCTGGTATCGTCTTCTTTGTGCTCC
AACTGGAGTGTACAAGTGCCCACGACGTAAATTGCCGTCGCTGTGACTTG
ACACAACTCTTCCGCATTCCTCATCCACTCCTCCCTCCCTCCCTCCCTCC
TTCCGTCCCTCCCCAAATCCTTCCACAGGAAATCTGGCGCTCTCCGCCTT
CGGCTCCATCATCCGCGTGGATCTGCGGGAAGGAGACGAGCGGGTGGTGA
AGGCGGGTCATGTCTTGGCGTGGACGGAGGCCACTCGGGTCAGCTTCGGT
CGGTCGGACGGGAGGGAGGGAGGGAGAGAGGGAGGGAAGGAGGGAGGGGA
TGAGAAAGGGGAGCCGACGCGTCATAGAAGGCCATAATCCGCCATTTTTT
TTTCACTGAAATATTCCCTGTTATTTTTCTACACATCTACAGGCGCCAGT
TCAGCCTCCTCCTCCCTCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCCC
CCCCTCCTCCTCCTCCTCCAACGGCGTTTACACTTTAACAGGCCCTGGTG
TCATCTACCTTCGTTCTCACTCGCCCTCTGCCTTCCGCAAGTGGGCCTCA
GCCGGTGCGGCTATCCTCAAAGCTGATGCCAGCAGCATGATCCCCTCTTC
TCTCCCTCCCTCGTCCTCGGCCCCCTCCTCCTCAGTATCGGCGTATAAAG
GCGGAAGGGACGGAGGGGAGGCAGCAGCAGCCCTACTTGGCAGTGAGGGT
TTGGGGAAGCGGTTGAAGAAAAGGATAGGAAGGTGAGAGAGGGACGGAGG
GAGGCAAAGAGGGACGGAGGAAGGCAGGAAGGGTAGGGGGGAGGTTGATG
GCTTGGAACACTGACCGGGACGCACCAACCATTTTCTCCCTCCGTCTCTC
TCTCCCCTCCCCCTCCTTTGTCCAGCTTGATGGTCACCTGTCTGTCCGCC
CTCCTCTTCGTGGCGGGGATGCAGGTGCTCCAAGCCCTGCTGATGGAGGG
CCCGGATGGATTGAAACATGTCCCCAGAAATCTCCTGCTATTGCTACAGG
TAGCTAGCTACACGCCCTCCCTCCCTCCCTCCTTCCTTCCTTTTCTCTGA
TCAGCCCAGTACCAAGCACTGTCCATGCTCCATACGCAGCCAAGGCCTCT
GATTTCGTTCTACTGCTGCCGTTTCTCTCCCTCCCCCCCCTCCTTTGCCT
CACTCTCCCCTTCCCCCCCTCCGTCGCGGTATACAAGCCGGTGCTGGCTG
TCATGATAAGCGAGGCCTGTGTGGACATTGGCAAATCATTCGCTTCTCCT
TTCTTCTCCCTCTCTCCTCCCTCCCTCCCTCCCTTTCTCCTCCAGGGCCT
GCAAGCCGGCGCTGTAAAGGTGGGCGAGGCTCTTGTCGACCTGTATCAGT
CTGATGTCTGGAGAAGAGCACGGGGGGCTTTATCCTCTGCTGCTGCTGCT
GCTTCTGCTGCTGCTGCCGCTGGTGATGGTCGTATGGATAACGGAGAGGA
GCAAGGAAAGAAGTGTACGGCGGGTACCAGGAAAGGAGAGGAGAAGGGTT
TCGGGTGGGGAGGGGGTGGAGGGCAAGAGATCAAGGGAGAAGGGGGCTGG
GAGGAGTCGTTGCCTTTGAGATGAGAAGGAGGAAGGGAGGGAGGAGGGAG
GCAATCAAAGTACCGTTCAACAATCTCTTCGAGTAGGGGTTGGGCATTGC
CTTTCCGTGACAATCACTAACAGCCAAGGAAACGCGCGAATAATACTGCA
TAAAAACACATTTAATGTAATACTAAAATTATATTAAAACAACATATGAT
GATAT

Coding sequence (CDS) from alignment at chr10:46235..48889-

>NO10G00150.3 ID=NO10G00150.3|Name=NO10G00150.3|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at chr10:46235..48889- (Nannochloropsis oceanica)
ATGCCTTGCCTCCTGCCCGCTCACCTCCTGCCGGCACTCCTTCTCCTTAG
CACTGTCGCCGACGCCACCCTCCAAATGTCCGTGCTCTCCCCCGGGACAC
CTCAAGCTTGCCTTCAAGTACACTTCGAGCCGGGCAAGGATGACCACTCG
TCGTTACACATCGACTTGCGTGCGCTTGTGAGCCGCTCAGGCACCTTGTC
CCTCACCCCCTCCTCCTCATCCTCCTCTACTTCTTCTTCCTCCTCATTGT
CATCTCAGCCAGCATGGCGGCCAGGGCAACCACCACCACAGCAGCAACAT
CAGCAAATATTTTCTTCATATCCTTCTTCCCTTCAACCCTCCCTCGCCCG
TCTCTCTCTCTCCCAACGTGGCGGCAAAGGCGGGCATGTCATCCTCGCGC
CCGAGGCCCCAGGGGACGTAATTGTCTGCCACTTTTCCTCCTCCTCCTCC
TCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGTCTCCTTC
ACCCGTACCGGCCCTGGTGGTGGTGCGGGGCGCGTCCGTCCTCGCCCGCG
AAGGTGGGGTGGTTGTAGGAGAGGTAGCAGATAAGGGTCTTCTCAAGACG
CTTGAAACCGTGACTCGAGAACGAGAGAAGGAACGAGCACGCGCTGGAGG
CCATCAGTTCTCACAGCAGCAACACCAAGGTCAGCCGTTGCTGCAGAGAT
ATTCGGGGAATGGAAATCTGGCGCTCTCCGCCTTCGGCTCCATCATCCGC
GTGGATCTGCGGGAAGGAGACGAGCGGGTGGTGAAGGCGGGTCATGTCTT
GGCGTGGACGGAGGCCACTCGGGTCAGCTTCGGCGCCAGTTCAGCCTCCT
CCTCCCTCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCCCCCCCTCCTCC
TCCTCCTCCAACGGCGTTTACACTTTAACAGGCCCTGGTGTCATCTACCT
TCGTTCTCACTCGCCCTCTGCCTTCCGCAAGTGGGCCTCAGCCGGTGCGG
CTATCCTCAAAGCTGATGCCAGCAGCATGATCCCCTCTTCTCTCCCTCCC
TCGTCCTCGGCCCCCTCCTCCTCAGTATCGGCGTATAAAGGCGGAAGGGA
CGGAGGGGAGGCAGCAGCAGCCCTACTTGGCAGTGAGGGTTTGGGGAAGC
GGTTGAAGAAAAGGATAGGAAGCTTGATGGTCACCTGTCTGTCCGCCCTC
CTCTTCGTGGCGGGGATGCAGGTGCTCCAAGCCCTGCTGATGGAGGGCCC
GGATGGATTGAAACATGTCCCCAGAAATCTCCTGCTATTGCTACAGGGCC
TGCAAGCCGGCGCTGTAAAGGTGGGCGAGGCTCTTGTCGACCTGTATCAG
TCTGATGTCTGGAGAAGAGCACGGGGGGCTTTATCCTCTGCTGCTGCTGC
TGCTTCTGCTGCTGCTGCCGCTGGTGATGGTCGTATGGATAACGGAGAGG
AGCAAGGAAAGAAGTGTACGGCGGGTACCAGGAAAGGAGAGGAGAAGGGT
TTCGGGTGGGGAGGGGGTGGAGGGCAAGAGATCAAGGGAGAAGGGGGCTG
GGAGGAGTCGTTGCCTTTGAGATGA

Synonyms

Publications