NO09G00770, NO09G00770 (gene) Nannochloropsis oceanica

Overview
NameNO09G00770
Unique NameNO09G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2364
Alignment locationchr9:274395..276758 +

Link to JBrowse

Properties
Property NameValue
DescriptionRna pol ii accessory cdc73 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:274395..276758 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016570histone modification
GO:0006368transcription elongation from RNA polymerase II promoter
GO:0016043cellular component organization
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016593Cdc73/Paf1 complex
GO:0005654nucleoplasm
Vocabulary: INTERPRO
TermDefinition
IPR007852Cdc73/Parafibromin
IPR032041Cdc73_N
IPR031336CDC73_C
Homology
BLAST of NO09G00770 vs. NCBI_GenBank
Match: EWM27736.1 (rna pol ii accessory cdc73 family protein [Nannochloropsis gaditana])

HSP 1 Score: 528.1 bits (1359), Expect = 2.700e-146
Identity = 270/405 (66.67%), Postives = 321/405 (79.26%), Query Frame = 0
Query:   45 RQGYYKLGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETATSKQIEQSRLLSRAAIV---VSQAGALKRPAGGDSAPGASDRLNLHLGDVSRSTGLDAQTLRELKQVLETKKKKIEGGAGEEELGKVDGKMHRLLKSDERPVHDRNSVLLTPTADYTIALRMIETAQKRAKEASGKTRGDGEGSGGAGRTSQFDPRPGAVGSGASSAAAADS--SRLHPPIIIVPSDPSAMVNMTNIVDFLEKAHFVGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWESVVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRGEVKGWNVKFYKINKSKRHMDGIAVSSFWNQLTEWLKLHKPWVLQPPTPRGRR 445
            R GYY L ELVI++DHAH+P+ QYL+ +GGVLKQQ+FV +LD+++LLKYLRGETATSKQI+Q RL+SRAA+V   V   G LKRPA G       D  +LHL +VSRSTGLDAQ L EL+ +LETK++++E GA EEEL KVD +MHR+LK+DE+ ++DRN+ LLTPTADY +AL  +E   KRAK+ SGK            R+S  + R      G SS   + S  SRLHPPIIIVPSDPSA+VNMTN+VD LE A FVG Q+RGKSKD LKRVKEL+I+KVL+G PR V+FRVVDNPVWLQE EW SVVAVFSNGKAWQF++WKHNTPVDLFHRCFGAVL FDD+ +RGEVKGWNVKFYKINK+KRHMDGIA+SSFWNQLT WLKL+KPWVL+PP   GR+
Sbjct:  150 RSGYYNLMELVIMIDHAHLPWNQYLKKIGGVLKQQTFVGRLDYNDLLKYLRGETATSKQIDQGRLISRAALVTPSVGTGGPLKRPAVGQRLASTFDGRDLHLREVSRSTGLDAQALGELRALLETKRRRLEEGAKEEELFKVDEEMHRILKADEQLLNDRNTALLTPTADYRVALNTVEATLKRAKDLSGK------AGTSRVRSSVLENRAVGREEGPSSGGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLKLNKPWVLEPPAVSGRK 548          
BLAST of NO09G00770 vs. NCBI_GenBank
Match: CBN80044.1 (RNA pol II accessory factor, Cdc73 family protein [Ectocarpus siliculosus])

HSP 1 Score: 162.2 bits (409), Expect = 3.800e-36
Identity = 133/472 (28.18%), Postives = 212/472 (44.92%), Query Frame = 0
Query:    3 DPLSVLREFVSSGRTWKEEGDEVVFGDVRFKKEEETAWRPANRQGYYKLGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETATSKQIEQS-------RLLSRA--------------AIVVSQAGALKRPAGGDSAPG---ASDRLNLHLGDVSRSTGLDAQTLRELKQVLETKKKKIEGGAGEEELGK--------VDGKMHRLLKSDERPVHDRNSVLLTPTADYTIALRMIETAQKRAKEASGKTRGDGEGS----------GGAGRTSQFDPRPGAVGSGASSAAAADSSRLHPPIIIVPSDPSAMVNMTNIVDFLEKAHFVGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWESVVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRGEVKGWNVKFYKINKSKRHMDGIAVSSFWNQLTEWLKLHKP 433
            + LS+LR+   + +T +EE D  VFG  R  K+  TAW+   +  YY L +LVIL++HA  P   Y+       K   +V+ ++  ++L YLRG+T  + QI+++       R   R+                  + A  L+   GG S  G     D L L  G+ +   G+    L EL+    + K+      G++             D  +   + ++E  + DRNSVL      +  AL      +++ K+   +   DG G                                            P+IIVP+ P+++V + N  DFL+  +F+   ++ KSK S ++  E+ I +V   Q +++KFRV+DN   L   EW++ V V   G AWQF  W+ + PV LF    G  + FDD  +  +V  WNV+  +INK KRH+D  A+  FW  L E++ L+KP
Sbjct:    2 EALSLLRQCTMARKTVREEKDYYVFGHRRVPKDTPTAWKSQVQSEYYSLKQLVILLEHADAPMVTYIAAC--TSKGVKWVASIEKADVLAYLRGQTDDAAQIDKTAAPPSSERANKRSHNELQKGMTDTEMREAKKAHAQRLENRGGGGSRAGLLSGQDPL-LSRGEGTGIGGISQDKLLELRAKRLSHKRNTIVSVGDDAADNPVDPKFLGADKMIVAKILANEMSISDRNSVLRKEGKSFRFALEYYNQVRRKEKD-QARENVDGYGKRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIIVPTVPTSLVTLYNATDFLQDGNFIPTMDK-KSK-SERKPSEIMIERV-NSQGKKMKFRVIDNATRLHPKEWKACVCVLVQGAAWQFKGWEWDQPVTLFQNVLGVHMKFDDVRVNDKVSQWNVRVLEINKHKRHLDKGALLEFWRLLDEFMLLNKP 466          
BLAST of NO09G00770 vs. NCBI_GenBank
Match: XP_004344233.1 (CDC73 protein [Capsaspora owczarzaki ATCC 30864] >KJE96263.1 CDC73 protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 145.2 bits (365), Expect = 4.800e-31
Identity = 119/446 (26.68%), Postives = 208/446 (46.64%), Query Frame = 0
Query:    1 MGDPLSVLREFVSSGRTWKEEGDEVVFGDVRFKKEEETAWRPANRQGYYKLGELVILV---DHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETATSKQIEQSRLLSRAAIVVSQAGALKRPAGGDSAPGASDRLNLHLGDVSRSTGLDAQTLRELKQVLETKKKKIEGGAGEEELGKVDGKMHRLLKSDERPVHDRNSVLLTPTADYTIALRMIETAQKR----AKEASGKT------RGDGEGSGGAGRTSQFDPRPGAVGSGASSAAAADSS-------RLHPPIIIVPSDPSAMVNMTNIVDFLEKAHFVGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWESVVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRGEVKGWNVKFYKINKSKRHMDGIAVSSFWNQLTEW 427
            M DPL++LR+F  SGR  +     +VFG++  ++  +T ++     GYY L  +  L+   D A   + QY+R           V+ +D  ++L Y+RGE AT+ +++ +  ++ A   V  A   K        PG+ D       D    TG  A    +   +               ++   +  +  LL+  E+ +  R+SV L  + +++  L +++  +KR    AK AS  T      R + +       + Q D     + S +S AAA+ ++       R   PIIIVP+   A++ + N+ + LE +HFV  QE  + +  ++   +  +    +   + V +RV+D+ + L+  +W+ VVAVF++G AWQF  WK  +P +LF +  G  L   +  +   +K W+V    +N  K H+D  AV  FW +L  W
Sbjct:    1 MADPLTLLRDFTQSGRAVQSVDSRLVFGNLASERSTQTNFKRTG-GGYYTLDAIWFLLQNADKATAQFGQYIRDAQAA--NVPSVALMDRKDVLSYIRGEIATTPKLDLNAFIAPAEPYVGAAATRKHAM---DEPGSQDSNKRTRMDSDMDTGSAASAAADQLPL---------------DVDSDEAFVKELLRR-EKLLRTRSSV-LQASKNFSSVLNVMQDIKKRQEQLAKTASSATGPKQYNRYETQEKDYLADSFQLDASGTNLASPSSRAAASPATNAPEAQQRDLVPIIIVPAVEDALITLANVKELLENSHFVSRQEL-RDRQQIRPTSDSVLVLRKKADGKAVPYRVIDSTLKLRPEDWKRVVAVFAHGPAWQFKGWKWPSPAELFMKVKGFHLMLQEGKVEDTIKSWDVSKLVVNPRKPHLDTTAVRQFWEELDNW 422          
BLAST of NO09G00770 vs. NCBI_GenBank
Match: XP_010551717.1 (PREDICTED: protein CDC73 homolog [Tarenaya hassleriana] >XP_010551718.1 PREDICTED: protein CDC73 homolog [Tarenaya hassleriana])

HSP 1 Score: 139.8 bits (351), Expect = 2.000e-29
Identity = 130/457 (28.45%), Postives = 196/457 (42.89%), Query Frame = 0
Query:    3 DPLSVLREFVSSGRTW---KEEGDEVVFG-DVRFKKEEETAWRPANRQGYYKLGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETATSKQIEQSRLLSRAAIVVSQAGALKRPAGGDSAPGASDRLNLHLGDVSRSTGLDAQTLRELKQVLETKKKKIEGGAGEEELGKVDGKMHRLLKSDERPVHDRNSVLLTPTADYTIALRMIETAQKRAKEASGKTRGDG---------------EGSGGAGRTSQFDPRP--------GAVGSGASSAAAADSSRLHPPIIIVPSDPSAMVNMTNIVDFLEKAHFVGPQERGKSKDSLKRVKELTISKVLEGQPRRV--KFRVVDNPVWLQEAEWESVVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRG--EVKGWNVKFYKINKSKRHMDGIAVSSFWNQLTEWLK 429
            DPLSVLREF   G      +  GDE  FG +  F    ETA+R +     Y L  LV  V + H+ + +Y+++   V      V+ LD   LL YL G  A+S  I+         +++ Q  A  +    +  P   +        VSR   ++   + +             G  GE+    VD  M  L++S+ERP+  R ++L     D+   L      ++  +    + R DG                G GG+G  S FD  P        G +G G              PII+VPS    ++ + N+ +FLE   F+    + K     K    +T+ K       RV   + V D P  L++ +W+ VVAVF  GK WQF +W     V++F++  G  L F+DD+I      K WNVK   I+K+KRH D  A    W +L E+++
Sbjct:    2 DPLSVLREFTIRGEDLDRIERVGDEYRFGSECSFPCAAETAYR-SKSGSLYTLEALVHYVKNQHLKHGEYMQST--VKNAVPAVTLLDRKPLLDYLTGRVASSDSID--------FLLLQQQNAQSQKKNEEYRPDQDNS-----AFVSRENAIEDMEVEDF------------GKPGED----VDYVM--LIRSNERPLKSREAILECKNRDFYSVLVNSTKREEERQRIESQQRKDGLVAKSRLMGAEERGVVGFGGSGDNSGFDANPKPKLHLKSGKIGEGV-------------PIILVPSAFQTLITIYNVKEFLEDGVFIPTDVKAKQMKGPK-PDCITVQKKFSRDRERVVTAYEVRDKPSALKQDDWDRVVAVFVLGKEWQFKDWPFKDHVEIFNKVLGFFLRFEDDSIESAKTAKQWNVKIISISKNKRHQDRAAALEVWEKLEEFVR 410          
BLAST of NO09G00770 vs. NCBI_GenBank
Match: KHN72688.1 (Parafibromin [Toxocara canis])

HSP 1 Score: 139.0 bits (349), Expect = 3.500e-29
Identity = 140/513 (27.29%), Postives = 216/513 (42.11%), Query Frame = 0
Query:    1 MGDPLSVLREFVSSGRTWKE--EGDE--VVFGDVRFKKEEETAWRPANRQG-YYKLGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETATSKQIEQSRLLSRAAIVVSQAGALK---RPAGGDSAPGASDRLNLHLGDVSR-STGLDAQTLRELKQVLETK-----KKKIEGGAGEEELGKVDGK----------------MHRLLKSDERPVHDRNSVLLTPTADYTIALRMI-------ETAQKRAKEASGKTRGDGEGSG--------------GAGRTSQFDPRPG---------AVGSGASSAAAADSS--------------------RLHPPIIIVPSDPSAMVNMTNIVDFLEKAHFVGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWESVVAVFSNGKAWQFSEWK-HNTPVDLFHRCFGAVLNFDDDTIRGEVKGWNVKFYKINKSKRHMDGIAVSSFWNQLTEWLKLHKP 433
            M DPL +L E+    RT +E  +G E   VFGDV + ++ +T      +Q  YY L  L++L ++  M +  Y++   G  K    V++ D   LL YL+GE     Q         A I +S+    +   + A  D         NL +G V+  S     + +R+L   L        K K +       +  VD                  + R LK+ ER   +R SV+  P+ D+T  L ++       E AQ++   A       GE S                  +T+ F    G         A+ S  +   AADS+                    +   PIII+P+  ++++ M N+ D L+   FV  +ER   K + +R  E+ I +   G    V +RVVDN + L + EW  VVAVF  G AWQF  W+    P D+F       L FDD  + G V  W+V   K++++KRH+D   ++ FW  L  ++  +KP
Sbjct:    1 MADPLKLLHEYAVGRRTMREIKQGHERYFVFGDVAYPRDVKTNLIVYGKQNEYYTLESLLLLWENREMQHTAYVKDASG--KGIQCVTRPDRRELLAYLKGEREQPPQNVDVLAPIPAPIPLSRLSENEPEPKKARYDGEENRQRIQNLLMGSVTEGSKSTAGEGVRDLSDKLTADKIAALKNKRKKNMARNTIKSVDDSFATAMDLDVPEVGTDVIDRELKNKERVWRNRTSVMEAPSKDFTPILSILHSLKVREEAAQRQKASAPPPRNAPGERSRVQPVGYSRYDQERFNKDKTAGFKIETGLTFQGTSLKAISSAGAKPMAADSTTPTNKSSLAAGDLNGRPQKRQSRMPIIIIPAAGTSLITMYNVRDILQDMRFVSTEER---KGACRRENEVLIQRAKNGGV-TVPYRVVDNALKLNDDEWSRVVAVFVQGPAWQFKGWRWGGNPTDIFANVAAFHLMFDDQRLDGNVAKWSVNILKLSRTKRHLDRAMLARFWETLDHYIVKNKP 507          
BLAST of NO09G00770 vs. NCBI_GenBank
Match: XP_024021227.1 (protein CDC73 homolog isoform X2 [Morus notabilis])

HSP 1 Score: 136.3 bits (342), Expect = 2.200e-28
Identity = 132/457 (28.88%), Postives = 197/457 (43.11%), Query Frame = 0
Query:    3 DPLSVLREFVSSGRTWK--EEGDEVVFG-DVRFKKEEETAWRPANRQG-YYKLGELVILVDHAHMPYQQYLRTMGGVLKQQSF--VSKLDFDNLLKYLRGETATSKQIEQSRLLSRAAIVVSQAGALKRPAGGDSAPGASDRL---NLHLGDVSRSTGLDAQTLRELKQVLETKKKKIEGGAGEEELGKVDGKMHRLLKSDERPVHDRNSVLLTPTADYTIALRMIETAQKRAKEASGKTRGDG------------EGSGGAGRTSQFDPRP------GAVGSGASSAAAADSSRLHPPIIIVPSDPSAMVNMTNIVDFLEKAHFVGPQERGKSKDSLKRVKELTISKVLEGQPRRV--KFRVVDNPVWLQEAEWESVVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRG--EVKGWNVKFYKINKSKRHMDGIAVSSFWNQLTEWLK 429
            DPLS LR+F   G   K     DE  FG D  F     TA+R  ++QG  Y L  LV  + +    + +YL+      + Q F  V+ +D   LL YL G+ +TS  IE          +V Q      P      P + D     ++ LGD      +D +                    G+ EL KVD     ++++ ERP+ DR ++L     ++   L      ++  + A  + R DG             G GG G  S +DP P      G +G G              PII+VPS    ++ + N+ +FLE   F+    + K     K    +T+ K       RV   + V D P  L+  +W+ VVAVF  GK WQF +W     V++F++  G  + F+DD+I     VK WNVK   I+K+KRH D  A    W++L E+++
Sbjct:    2 DPLSALRDFTIRGELDKISRFNDEFRFGSDFSFPCSTPTAFR--SKQGNLYTLETLVYYIKNHQAKHTEYLQN----ARTQGFPAVTFIDRKPLLDYLTGKVSTSDSIE---------FLVPQNPRFPDP----PIPSSVDEYRPDDVVLGDAVEHGAVDER-----------------ARVGDGELEKVD--FMAMIRASERPLKDREALLECKGRNFHAVLTASVRREEERQRAESQQRKDGLVAKNRLMSADERGIGGYGDDSGYDPAPKPKMKGGKIGEGV-------------PIILVPSAFQTLITIYNVKEFLEDGVFIPTDVKVKQMKGPK-PDCVTVQKKFSRDRDRVVTAYEVRDKPSALKAEDWDRVVAVFVLGKEWQFKDWPFKDHVEIFNKIKGFFMRFEDDSIESAKNVKQWNVKIISISKNKRHQDRAAALEVWDRLEEFVR 406          
BLAST of NO09G00770 vs. NCBI_GenBank
Match: PTQ49970.1 (hypothetical protein MARPO_0001s0040 [Marchantia polymorpha] >PTQ49971.1 hypothetical protein MARPO_0001s0040 [Marchantia polymorpha])

HSP 1 Score: 136.3 bits (342), Expect = 2.200e-28
Identity = 130/479 (27.14%), Postives = 213/479 (44.47%), Query Frame = 0
Query:    3 DPLSVLREFV--SSGRTWKEEGDEVVFG-DVRFKKEEETAWRPANRQG-YYKLGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETATSKQIEQSRLLSRAAIVVSQAGALKRPAGGDSAPGASD------RLNLHLGDVSRSTGL----------------DAQTLRELKQVLETKKKKIEG-----GAGEEELGKVDGKMHRLLKSDERPVHDRNSVLLTPTADYTIALRMIETAQKRA-KEASGKTRGDGEG-SGGAGRTSQFDPRPGAVGSGASSAAAADSSRLH---------------PPIIIVPSDPSAMVNMTNIVDFLEKAHFVGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWESVVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRG--EVKGWNVKFYKINKSKRHMDGIAVSSFWNQLTEWLKLHK 432
            D L+VLRE+   +     K  GDE  FG D RF +  ETA+R  ++QG  Y L  LV  V + H+ + +Y++   G+  Q   V+  D   L  YL G+ +++  IE   + +   + + +    +RP   + A G+ D      R+ +   D S+  G+                  + +R+ + +L    K  +G        ++E  + D ++    K  E+PV         PT++   A R +   +KR  K+  G    +  G            P+  A     +      S  LH               PPIIIVPS    M+N  N  +F E   +V P    K+K   K+ +++ I + + G+   VK+ + D P    + +WE VVA+F  GK WQF +W     V++F++  G  L F+DD++    +VK WNV+   ++K KRH D  A  +FW+ L + +K  K
Sbjct:    2 DALAVLREYTVRNDLENVKLMGDEYFFGEDYRFPRNVETAYR--SKQGSLYTLESLVFFVRNKHVKHTEYMQQARGLKLQ--IVTYTDRKPLQDYLEGKVSSTDSIE--LVPTSTGLPLREDRPKRRPEEENEAVGSDDNNAPSKRMRMEAEDYSKDAGIFVSDSSGKSLIEIIRDRERPVRDRESILICHNKNFQGVLALLKGRDDERRRADDQVK---KEAEKPVEQPG----MPTSN--SASRYVNVEEKRFWKDHLGTDAAEELGIDPSQSYADSIKPKDNARPKPDTRIGRPPSQHLHHRPPLSSSGHKKPEGPPIIIVPSASQTMLNTYNAKEFFEDGVYVAPDV--KAKSLTKKPEDVVIYRKM-GRDHPVKYEIRDKPSVFSKKDWERVVAIFVLGKEWQFKDWPFKDHVEIFNQILGIFLRFEDDSVESAQKVKQWNVRILSLSKHKRHQDRTAALAFWDSLDKSVKSRK 462          
BLAST of NO09G00770 vs. NCBI_GenBank
Match: OUC41622.1 (RNA pol II accessory factor, Cdc73 family [Trichinella nativa])

HSP 1 Score: 135.2 bits (339), Expect = 5.000e-28
Identity = 125/474 (26.37%), Postives = 203/474 (42.83%), Query Frame = 0
Query:    1 MGDPLSVLREFVSSGRTWKEEGDEVVFGDVRFKKEEETAWRPANRQG-YYKLGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGE--------TATSKQIEQSRLLSRAAIVVSQAGALKRPAGGDSAPGASDRLNL----------------HLGDVSRSTGLDAQTLRELK-QVLETKKKKIEGGAGE--------EELGKVDGKMHRLLKSDERPVHDRNSVLLT----PTADYTIALRMIETAQKRAKEASGKTRGDGEGSGGAGRTSQFDPRPGAVGSGASSAAAADSSRL-HPPIIIVPSDPSAMVNMTNIVDFLEKAHFVGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWESVVAVFSNGKAWQFSEWKHN-TPVDLFHRCFGAVLNFDDDTIRGEVKGWNVKFYKINKSKRHMDGIAVSSFWNQLTEWLKLHKPWV 435
            M DPL   R+++ + R   E  + ++FGD  F K+ +T +   N++  YY +G L     +  + +  Y++    V      V++ D   L +YL  E           S  I QS  +SR   +       KRP   D      D+  L                 + D+S+  GL A+ +  L+ + L  K+ +I+    E         E  ++D   +R + S ER    R +V+ +        + I  RM     +   + +       +   G  R +Q   R        S+A      R+   PIII+PS  S+++ + N+ + LE   FV   E  K    +KR  E+ I +  EG    V +R+VDNP+     EW+ VVAVF+ G AWQF  W    TP D+F +     L +DDD +   +  W V    ++++KRH+D      FW  +   +K HKP++
Sbjct:    1 MADPLKFFRDYILNNRPIVERDEYIIFGDTAFNKDAKTNYLVWNKKDEYYTVGSLWFFYKNRELLHTTYVKE--AVSNNVQIVTRPDRKTLEEYLTNEKFDRIPANVDLSAPIPQSIPVSRLTSLADAQAEAKRPRVEDEEQARKDKERLMAILDRGTSMSVTKPDTIRDLSKEHGLTAEKIAALRSKALARKRTQIKNTEEEIEEPTRTFVESDQLDA--YRDIISRERTYRTRTTVMQSSVNLANQIFGILERMKIKENRNRPQPAVAPEAVEKHRAGYSRYAQERFRKEDSAKVISNAIKPPMKRVSRTPIIIIPSANSSLITVFNVRELLENFRFVSSAE--KRAAGVKREPEVLIQRCKEGGV-TVPYRIVDNPMRFLPEEWDRVVAVFAQGPAWQFKNWPLGATPTDIFSKVKAFHLTWDDDKLDNNISQWAVDVMALSRTKRHLDRAIFQKFWEGVERHIKRHKPFL 467          
BLAST of NO09G00770 vs. NCBI_GenBank
Match: XP_024377942.1 (protein CDC73 homolog [Physcomitrella patens] >PNR52835.1 hypothetical protein PHYPA_009210 [Physcomitrella patens])

HSP 1 Score: 135.2 bits (339), Expect = 5.000e-28
Identity = 135/484 (27.89%), Postives = 204/484 (42.15%), Query Frame = 0
Query:    3 DPLSVLREFVSSGR--TWKEEGDEVVFG-DVRFKKEEETAWRPANRQGYYKLGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETATSKQIEQSRLLSRAAIVVSQAGALKRPAGGDSAPGASDRLNLHLGDVSRSTGLDAQTLRELKQVLETKKKKIEGGAGEEELGKVDGKMHRLLKSDERPVHDRNSVLLTPTADYTIALRMIETAQKRAKEASG-KTRGD-GEGSGG-------AGRTSQFDPR-----------PGAVGSGASSAAAADSSRLH------------------------------PPIIIVPSDPSAMVNMTNIVDFLEKAHFVGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWESVVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRG--EVKGWNVKFYKINKSKRHMDGIAVSSFWNQLTEWLKLHK 432
            DPLSVLR++   G     K  GD   FG D  F+K  ETA+R + + G+Y L  LV  V + HM +  Y+        Q  F +  D   LL YL G  AT+  IE     +  A +   AG            G  D ++ H     R+   + Q       V+ET  +  + GA           +  +++  E PV DR ++LL     +   L  + T +   K+      R D G+G  G       A R +  + +              +G   S +  +DS +                                PPIIIVPS    ++N  N+ +FLE   +V P+   K K   K+V  + + + + G+ R V + V D    L   +WE VVA+F  GK WQF  W  +  V++F++  G  L F+DD++    +V  WNVK   ++K KRH D  AV +FW  L  +++  K
Sbjct:    2 DPLSVLRDYTIRGELDQVKLVGDVYNFGDDYSFRKNIETAYR-SKQGGFYTLDSLVFFVKNIHMKHTDYMNAARAAKLQ--FATFTDRKPLLDYLEGRVATNDAIELLPPTAAPASINEWAGGKHAHDEEPEVVGVDD-VDHHAAKKFRAQPWEGQ------NVMET--QFCDDGA----------SVINIIREREWPVRDRETILLCHNKSFESVLSSLLTKRDDDKKIPDVDVRKDLGKGPDGLMPAPNSANRYANVEEKRFWKEHLGTDVAEELGINPSQSYISDSKKKDAARMKPDSKASQRPPHHPHHRPNVKTKPDGPPIIIVPSASQTLLNTFNVKEFLEDGVYVSPEV--KVKGMAKKVDIVFVQRKM-GRERPVPYEVRDKVQGLTSKDWERVVAIFVLGKDWQFKGWPFSDRVEIFNKFMGVFLRFEDDSVESAKQVMQWNVKIINLSKHKRHQDKTAVLNFWQGLDSYIQSRK 460          
BLAST of NO09G00770 vs. NCBI_GenBank
Match: OAE18354.1 (hypothetical protein AXG93_2727s1200 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 134.8 bits (338), Expect = 6.500e-28
Identity = 129/476 (27.10%), Postives = 212/476 (44.54%), Query Frame = 0
Query:    3 DPLSVLREFV--SSGRTWKEEGDEVVFG-DVRFKKEEETAWRPANRQG-YYKLGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETATSKQIEQSRLLSRAAIVVSQAGALKRPAGGDSAPGASD------RLNLHLGDVSRSTGL----------------DAQTLRELKQVLETKKKKIEG-----GAGEEELGKVDGKMHRLLKSDERPVHDRNSVLLTPTADYTIALRMIETAQKRA-KEASGKTRGDGEG-SGGAGRTSQFDPRPGAVGSGASSAAAADSSRLH---------------PPIIIVPSDPSAMVNMTNIVDFLEKAHFVGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWESVVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRG--EVKGWNVKFYKINKSKRHMDGIAVSSFWNQLTEWLK 429
            D L+VLRE+   +     K  GDE  FG D RF +  ETA+R  ++QG  Y L  LV  V + H+ + +Y++   G+  Q   V+  D   L  YL G+ +++  IE   + +   + + +    +RP   + A G+ D      R+ +   D S+  G+                  + +R+ + +L    K  +G        ++E  + D ++    K  E+PV         PT++   A R +   +KR  K+  G    +  G            P+  A     +      S  LH               PPIIIVPS    M+N  N  +F E   +V P    K+K   K+ +++ I + + G+   VK+ + D P    + +WE VVA+F  GK WQF +W     V++F++  G  L F+DD++    +VK WNV+   ++K KRH D  A  +FW+ L + +K
Sbjct:    2 DALAVLREYTVRNDLENVKLMGDEYFFGEDYRFPRNVETAYR--SKQGSLYTLESLVFFVRNKHVKHTEYMQQARGLKLQ--IVTYTDRKPLQDYLEGKVSSTDSIE--LVPTSTGLPLREDRPKRRPEEENEAVGSDDNNAPSKRMRMEAEDYSKDAGIFVSDSSGKSLIEIIRDRERPVRDRESILICHNKNFQGVLALLKGRDDERRRADDQVK---KEAEKPVEQPG----MPTSN--SASRYVNVEEKRFWKDHLGTDAAEELGIDPSQSYADSIKPKDNARPKPDTRIGRPPSQHLHHRPPLSSSGHKKPEGPPIIIVPSASQTMLNTYNAKEFFEDGVYVAPDV--KAKSLTKKPEDVVIYRKM-GRDHPVKYEIRDKPSVFSKKDWERVVAIFVLGKEWQFKDWPFKDHVEIFNQILGIFLRFEDDSVESAQKVKQWNVRILSLSKHKRHQDRTAALAFWDSLDKSVK 459          
The following BLAST results are available for this feature:
BLAST of NO09G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27736.12.700e-14666.67rna pol ii accessory cdc73 family protein [Nannoch... [more]
CBN80044.13.800e-3628.18RNA pol II accessory factor, Cdc73 family protein ... [more]
XP_004344233.14.800e-3126.68CDC73 protein [Capsaspora owczarzaki ATCC 30864] >... [more]
XP_010551717.12.000e-2928.45PREDICTED: protein CDC73 homolog [Tarenaya hassler... [more]
KHN72688.13.500e-2927.29Parafibromin [Toxocara canis][more]
XP_024021227.12.200e-2828.88protein CDC73 homolog isoform X2 [Morus notabilis][more]
PTQ49970.12.200e-2827.14hypothetical protein MARPO_0001s0040 [Marchantia p... [more]
OUC41622.15.000e-2826.37RNA pol II accessory factor, Cdc73 family [Trichin... [more]
XP_024377942.15.000e-2827.89protein CDC73 homolog [Physcomitrella patens] >PNR... [more]
OAE18354.16.500e-2827.10hypothetical protein AXG93_2727s1200 [Marchantia p... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010546NSK010546Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00770.1NO09G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|24917gene_4481Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100034g12gene2847Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00770.1NO09G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00770 ID=NO09G00770|Name=NO09G00770|organism=Nannochloropsis oceanica|type=gene|length=2364bp
GGAGGTCGACGAGATCCTCCTTAGCATCATAGCTTGCACTGCAACACGAG
ACAAAACAACCCAGCCAGTATCTCCCTAACCAACGCATTCCACGCTCACA
GTTCACTCAGAAGACTTGATCTTACCGGCTGTCACTCTGGGGAATCGGCT
GCTTATTTAGATAGGGTGAACACCAGCAAAAGACGAGCAGCCTCTCCCTT
CGTCATAATCATTGTGGCTCGATCGACAGCGTGGGTCAAGGACGACGAGC
CAATCATCCAAAAGCTGGCAAACGACCAAGCATCATCATGGGGGATCCTC
TCTCGGTGCTTCGAGAGTTTGTGTCATCCGGGCGCACGTGGAAGGAGGAG
GGCGACGAGGTGGTATTTGGGGACGTGCGGTTTAAGAAAGAGGAGGAGAC
TGCCTGGCGGCCTGCCAATCGACAAGgtacgcaatcctcagtacactaaa
ggatctcacagagggtcaactacctctcctccatcccttcctgttgcttt
gtgtatttgtcctgcctctcgtttgttttggtctctttctatgccccggg
ttaagccccctctccttccccccccttccaccatcccgccccttaatcga
cagGCTATTACAAGCTAGGCGAACTCGTCATTTTGGTTGACCACGCTCAC
ATGCCGTATCAACAGTATCTACGAACGATGGGCGGGGTGTTGAAGCAACA
GTCTTTTGTCAGTAAATTGGACTTCGACAACTTGCTCAAGTACTTGCGGG
GGGAGACTGCCACCTCCAAACAGgtaaggtcacagaagagaagagaacac
gaaaacgatagagaattggcgtttataaagtttgtcgtcacgttctctct
tttctttttccatttcgtgtgtcatgtgttaacagATTGAACAAAGCCGC
TTGCTTTCCCGAGCGGCCATCGTCGTCTCCCAAGCAGGAGCACTCAAGAG
GCCCGCGGGTGGCGACTCTGCCCCAGGCGCCTCGGACCGTCTCAACCTCC
ATTTAGGgtaagagaaagatatttctttcttctgacaggaagatgatcgc
ggcgtaaaatcattgaaagtaaatctcaatgagaactcattttgggctgt
cttctgttatttattcgacagGGACGTGAGCCGTAGCACGGGCCTGGATG
CGCAGACGCTGCGGGAGCTGAAGCAGGTGTTGGAGACCAAAAAAAAGAAA
ATAGAGGGGGGCGCAGGAGAGGAAGAGCTGGGGAAGGTGGACGGGAAGAT
GCACCGTCTCCTCAAGTCAGATGAGCGCCCAGTGCACGACCGGAATAGCG
TTCTTCTCACCCCGACGGCCGACTACACTATCGCCCTGCGCATGATCGAA
ACAGCGCAGAAGCGGGCCAAGGAGGCCAGTGGCAAAACAAGGGGGGATGG
GGAAGGGAGTGGAGGGGCGGGACGCACGTCGCAGTTTGACCCACGGCCAG
GCGCTGTCGGCAGTGGTGCCTCGTCAGCGGCGGCGGCGGATTCGTCTCGC
TTGCACCCGCCAATAATCATTGTGCCGAGCGACCCGTCTGCCATGGTCAA
CATGACCAATATTGTTGATTTCCTCGAGAAGGCTCATTTTgtaagtatag
gtttggtcttattctggcagactcaatatttctcgggatgcagtccgatt
tttcatgcctcacgctttggtccttttctctctctctccctccccacgtc
catctctctctccttagGTCGGTCCGCAAGAACGCGGCAAGTCCAAGGAT
AGCCTCAAGCGAGTCAAGGAGCTGACCATCAGTAAAGTATTAGAGGGGCA
GCCCCGGCGGGTGAAGTTCCGGGTAGTGGATAACCCGGTGTGGTTGCAGG
AGGCGGAGTGGGAGTCGGTGGTAGCGGTGTTTTCCAATGGCAAGGCATGG
CAGTTTTCTGAGTGGAAGCATAATACCCCCGTGGATCTTTTTCATCGATg
tacgttgtttttccgagttttgttaatgtgcaaaacggaggagggcagga
aaggtttacacacactcacacaccaaacatatttcctgtcactttttctg
gaatcgtagGCTTTGGGGCCGTGCTGAACTTCGACGACGACACAATCCGG
GGGGAGGTAAAGGGGTGGAACGTCAAGTTTTACAAGATCAACAAGTCCAA
GCGGCACATGGATGGCATTGCCGTCTCATCGTTTTGGAACCAGCTGACCG
AGTGGCTCAAGCTGCACAAGCCGTGGGTTCTCCAACCGCCGACCCCCAGG
GGGAGGAGATGAAAGGGAGGAGGTCTGGGGACTGTATGTTAAAAATTAAA
GGTAGCGGTATCAAAATGAGGAGGACTAAGAACACGTAAAGAAAAAATGT
GCCTGATTTTGCTG
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protein sequence of NO09G00770.1

>NO09G00770.1-protein ID=NO09G00770.1-protein|Name=NO09G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MGDPLSVLREFVSSGRTWKEEGDEVVFGDVRFKKEEETAWRPANRQGYYK
LGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETAT
SKQIEQSRLLSRAAIVVSQAGALKRPAGGDSAPGASDRLNLHLGDVSRST
GLDAQTLRELKQVLETKKKKIEGGAGEEELGKVDGKMHRLLKSDERPVHD
RNSVLLTPTADYTIALRMIETAQKRAKEASGKTRGDGEGSGGAGRTSQFD
PRPGAVGSGASSAAAADSSRLHPPIIIVPSDPSAMVNMTNIVDFLEKAHF
VGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWES
VVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRGEVKGWNVK
FYKINKSKRHMDGIAVSSFWNQLTEWLKLHKPWVLQPPTPRGRR*
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Synonyms
Publications