jgi.p|Nanoce1779_2|24917, gene_4481 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|24917
Unique Namegene_4481
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:704221..706386 -

Link to JBrowse

Properties
Property NameValue
TranscriptId25003
ProteinId24917
Product nameRNA pol II accessory factor, Cdc73 family-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:704221..706386 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00770NO09G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|24917mRNA_4481-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|24917mRNA_4481Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|24917

>mRNA_4481-protein ID=mRNA_4481-protein|Name=jgi.p|Nanoce1779_2|24917|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MGDPLSVLREFVSSGRTWKEEGDEVVFGDVRFKKEEETAWRPANRQGYYK
LGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETAT
SKQIEQSRLLSRAAIVVSQAGALKRPAGGDSAPGASDRLNLHLGDVSRST
GLDAQTLRELKQVLETKKKKIEGGAGEEELGKVDGKMHRLLKSDERPVHD
RNSVLLTPTADYTIALRMIETAQKRAKEASGKTRGDGEGSGGAGRTSQFD
PRPGAVGSGASSAAAADSSRLHPPIIIVPSDPSAMVNMTNIVDFLEKAHF
VGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWES
VVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRGEVKGWNVK
FYKINKSKRHMDGIAVSSFWNQLTEWLKLHKPWVLQPPTPRGRR*
back to top
Synonyms
Publications