NO09G00770.1, NO09G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00770.1
Unique NameNO09G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1724
Alignment locationchr9:274395..276758 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:274395..276758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00770.1 vs.
Match: EWM27736.1 (rna pol ii accessory cdc73 family protein [Nannochloropsis gaditana])

HSP 1 Score: 528.1 bits (1359), Expect = 2.700e-146
Identity = 270/405 (66.67%), Postives = 321/405 (79.26%), Query Frame = 0 
Query:   45 RQGYYKLGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETATSKQIEQSRLLSRAAIV---VSQAGALKRPAGGDSAPGASDRLNLHLGDVSRSTGLDAQTLRELKQVLETKKKKIEGGAGEEELGKVDGKMHRLLKSDERPVHDRNSVLLTPTADYTIALRMIETAQKRAKEASGKTRGDGEGSGGAGRTSQFDPRPGAVGSGASSAAAADS--SRLHPPIIIVPSDPSAMVNMTNIVDFLEKAHFVGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWESVVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRGEVKGWNVKFYKINKSKRHMDGIAVSSFWNQLTEWLKLHKPWVLQPPTPRGRR 445
            R GYY L ELVI++DHAH+P+ QYL+ +GGVLKQQ+FV +LD+++LLKYLRGETATSKQI+Q RL+SRAA+V   V   G LKRPA G       D  +LHL +VSRSTGLDAQ L EL+ +LETK++++E GA EEEL KVD +MHR+LK+DE+ ++DRN+ LLTPTADY +AL  +E   KRAK+ SGK            R+S  + R      G SS   + S  SRLHPPIIIVPSDPSA+VNMTN+VD LE A FVG Q+RGKSKD LKRVKEL+I+KVL+G PR V+FRVVDNPVWLQE EW SVVAVFSNGKAWQF++WKHNTPVDLFHRCFGAVL FDD+ +RGEVKGWNVKFYKINK+KRHMDGIA+SSFWNQLT WLKL+KPWVL+PP   GR+
Sbjct:  150 RSGYYNLMELVIMIDHAHLPWNQYLKKIGGVLKQQTFVGRLDYNDLLKYLRGETATSKQIDQGRLISRAALVTPSVGTGGPLKRPAVGQRLASTFDGRDLHLREVSRSTGLDAQALGELRALLETKRRRLEEGAKEEELFKVDEEMHRILKADEQLLNDRNTALLTPTADYRVALNTVEATLKRAKDLSGK------AGTSRVRSSVLENRAVGREEGPSSGGRSSSRGSRLHPPIIIVPSDPSALVNMTNVVDLLENAKFVGLQDRGKSKDGLKRVKELSITKVLDGGPRPVRFRVVDNPVWLQEQEWASVVAVFSNGKAWQFADWKHNTPVDLFHRCFGAVLIFDDEPVRGEVKGWNVKFYKINKNKRHMDGIAISSFWNQLTGWLKLNKPWVLEPPAVSGRK 548
The following BLAST results are available for this feature:
BLAST of NO09G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27736.12.700e-14666.67rna pol ii accessory cdc73 family protein [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00770NO09G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00770.1NO09G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00770.1.cds1NO09G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00770.1.cds2NO09G00770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00770.1.cds3NO09G00770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00770.1.cds4NO09G00770.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00770.1.cds5NO09G00770.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00770.1.cds6NO09G00770.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00770.1 ID=NO09G00770.1|Name=NO09G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp
GGAGGTCGACGAGATCCTCCTTAGCATCATAGCTTGCACTGCAACACGAG
ACAAAACAACCCAGCCAGTATCTCCCTAACCAACGCATTCCACGCTCACA
GTTCACTCAGAAGACTTGATCTTACCGGCTGTCACTCTGGGGAATCGGCT
GCTTATTTAGATAGGGTGAACACCAGCAAAAGACGAGCAGCCTCTCCCTT
CGTCATAATCATTGTGGCTCGATCGACAGCGTGGGTCAAGGACGACGAGC
CAATCATCCAAAAGCTGGCAAACGACCAAGCATCATCATGGGGGATCCTC
TCTCGGTGCTTCGAGAGTTTGTGTCATCCGGGCGCACGTGGAAGGAGGAG
GGCGACGAGGTGGTATTTGGGGACGTGCGGTTTAAGAAAGAGGAGGAGAC
TGCCTGGCGGCCTGCCAATCGACAAGGCTATTACAAGCTAGGCGAACTCG
TCATTTTGGTTGACCACGCTCACATGCCGTATCAACAGTATCTACGAACG
ATGGGCGGGGTGTTGAAGCAACAGTCTTTTGTCAGTAAATTGGACTTCGA
CAACTTGCTCAAGTACTTGCGGGGGGAGACTGCCACCTCCAAACAGATTG
AACAAAGCCGCTTGCTTTCCCGAGCGGCCATCGTCGTCTCCCAAGCAGGA
GCACTCAAGAGGCCCGCGGGTGGCGACTCTGCCCCAGGCGCCTCGGACCG
TCTCAACCTCCATTTAGGGGACGTGAGCCGTAGCACGGGCCTGGATGCGC
AGACGCTGCGGGAGCTGAAGCAGGTGTTGGAGACCAAAAAAAAGAAAATA
GAGGGGGGCGCAGGAGAGGAAGAGCTGGGGAAGGTGGACGGGAAGATGCA
CCGTCTCCTCAAGTCAGATGAGCGCCCAGTGCACGACCGGAATAGCGTTC
TTCTCACCCCGACGGCCGACTACACTATCGCCCTGCGCATGATCGAAACA
GCGCAGAAGCGGGCCAAGGAGGCCAGTGGCAAAACAAGGGGGGATGGGGA
AGGGAGTGGAGGGGCGGGACGCACGTCGCAGTTTGACCCACGGCCAGGCG
CTGTCGGCAGTGGTGCCTCGTCAGCGGCGGCGGCGGATTCGTCTCGCTTG
CACCCGCCAATAATCATTGTGCCGAGCGACCCGTCTGCCATGGTCAACAT
GACCAATATTGTTGATTTCCTCGAGAAGGCTCATTTTGTCGGTCCGCAAG
AACGCGGCAAGTCCAAGGATAGCCTCAAGCGAGTCAAGGAGCTGACCATC
AGTAAAGTATTAGAGGGGCAGCCCCGGCGGGTGAAGTTCCGGGTAGTGGA
TAACCCGGTGTGGTTGCAGGAGGCGGAGTGGGAGTCGGTGGTAGCGGTGT
TTTCCAATGGCAAGGCATGGCAGTTTTCTGAGTGGAAGCATAATACCCCC
GTGGATCTTTTTCATCGATGCTTTGGGGCCGTGCTGAACTTCGACGACGA
CACAATCCGGGGGGAGGTAAAGGGGTGGAACGTCAAGTTTTACAAGATCA
ACAAGTCCAAGCGGCACATGGATGGCATTGCCGTCTCATCGTTTTGGAAC
CAGCTGACCGAGTGGCTCAAGCTGCACAAGCCGTGGGTTCTCCAACCGCC
GACCCCCAGGGGGAGGAGATGAAAGGGAGGAGGTCTGGGGACTGTATGTT
AAAAATTAAAGGTAGCGGTATCAAAATGAGGAGGACTAAGAACACGTAAA
GAAAAAATGTGCCTGATTTTGCTG
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protein sequence of NO09G00770.1

>NO09G00770.1-protein ID=NO09G00770.1-protein|Name=NO09G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MGDPLSVLREFVSSGRTWKEEGDEVVFGDVRFKKEEETAWRPANRQGYYK
LGELVILVDHAHMPYQQYLRTMGGVLKQQSFVSKLDFDNLLKYLRGETAT
SKQIEQSRLLSRAAIVVSQAGALKRPAGGDSAPGASDRLNLHLGDVSRST
GLDAQTLRELKQVLETKKKKIEGGAGEEELGKVDGKMHRLLKSDERPVHD
RNSVLLTPTADYTIALRMIETAQKRAKEASGKTRGDGEGSGGAGRTSQFD
PRPGAVGSGASSAAAADSSRLHPPIIIVPSDPSAMVNMTNIVDFLEKAHF
VGPQERGKSKDSLKRVKELTISKVLEGQPRRVKFRVVDNPVWLQEAEWES
VVAVFSNGKAWQFSEWKHNTPVDLFHRCFGAVLNFDDDTIRGEVKGWNVK
FYKINKSKRHMDGIAVSSFWNQLTEWLKLHKPWVLQPPTPRGRR*
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mRNA from alignment at chr9:274395..276758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00770.1 ID=NO09G00770.1|Name=NO09G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at chr9:274395..276758+ (Nannochloropsis oceanica)
GGAGGTCGACGAGATCCTCCTTAGCATCATAGCTTGCACTGCAACACGAG
ACAAAACAACCCAGCCAGTATCTCCCTAACCAACGCATTCCACGCTCACA
GTTCACTCAGAAGACTTGATCTTACCGGCTGTCACTCTGGGGAATCGGCT
GCTTATTTAGATAGGGTGAACACCAGCAAAAGACGAGCAGCCTCTCCCTT
CGTCATAATCATTGTGGCTCGATCGACAGCGTGGGTCAAGGACGACGAGC
CAATCATCCAAAAGCTGGCAAACGACCAAGCATCATCATGGGGGATCCTC
TCTCGGTGCTTCGAGAGTTTGTGTCATCCGGGCGCACGTGGAAGGAGGAG
GGCGACGAGGTGGTATTTGGGGACGTGCGGTTTAAGAAAGAGGAGGAGAC
TGCCTGGCGGCCTGCCAATCGACAAGGTACGCAATCCTCAGTACACTAAA
GGATCTCACAGAGGGTCAACTACCTCTCCTCCATCCCTTCCTGTTGCTTT
GTGTATTTGTCCTGCCTCTCGTTTGTTTTGGTCTCTTTCTATGCCCCGGG
TTAAGCCCCCTCTCCTTCCCCCCCCTTCCACCATCCCGCCCCTTAATCGA
CAGGCTATTACAAGCTAGGCGAACTCGTCATTTTGGTTGACCACGCTCAC
ATGCCGTATCAACAGTATCTACGAACGATGGGCGGGGTGTTGAAGCAACA
GTCTTTTGTCAGTAAATTGGACTTCGACAACTTGCTCAAGTACTTGCGGG
GGGAGACTGCCACCTCCAAACAGGTAAGGTCACAGAAGAGAAGAGAACAC
GAAAACGATAGAGAATTGGCGTTTATAAAGTTTGTCGTCACGTTCTCTCT
TTTCTTTTTCCATTTCGTGTGTCATGTGTTAACAGATTGAACAAAGCCGC
TTGCTTTCCCGAGCGGCCATCGTCGTCTCCCAAGCAGGAGCACTCAAGAG
GCCCGCGGGTGGCGACTCTGCCCCAGGCGCCTCGGACCGTCTCAACCTCC
ATTTAGGGTAAGAGAAAGATATTTCTTTCTTCTGACAGGAAGATGATCGC
GGCGTAAAATCATTGAAAGTAAATCTCAATGAGAACTCATTTTGGGCTGT
CTTCTGTTATTTATTCGACAGGGACGTGAGCCGTAGCACGGGCCTGGATG
CGCAGACGCTGCGGGAGCTGAAGCAGGTGTTGGAGACCAAAAAAAAGAAA
ATAGAGGGGGGCGCAGGAGAGGAAGAGCTGGGGAAGGTGGACGGGAAGAT
GCACCGTCTCCTCAAGTCAGATGAGCGCCCAGTGCACGACCGGAATAGCG
TTCTTCTCACCCCGACGGCCGACTACACTATCGCCCTGCGCATGATCGAA
ACAGCGCAGAAGCGGGCCAAGGAGGCCAGTGGCAAAACAAGGGGGGATGG
GGAAGGGAGTGGAGGGGCGGGACGCACGTCGCAGTTTGACCCACGGCCAG
GCGCTGTCGGCAGTGGTGCCTCGTCAGCGGCGGCGGCGGATTCGTCTCGC
TTGCACCCGCCAATAATCATTGTGCCGAGCGACCCGTCTGCCATGGTCAA
CATGACCAATATTGTTGATTTCCTCGAGAAGGCTCATTTTGTAAGTATAG
GTTTGGTCTTATTCTGGCAGACTCAATATTTCTCGGGATGCAGTCCGATT
TTTCATGCCTCACGCTTTGGTCCTTTTCTCTCTCTCTCCCTCCCCACGTC
CATCTCTCTCTCCTTAGGTCGGTCCGCAAGAACGCGGCAAGTCCAAGGAT
AGCCTCAAGCGAGTCAAGGAGCTGACCATCAGTAAAGTATTAGAGGGGCA
GCCCCGGCGGGTGAAGTTCCGGGTAGTGGATAACCCGGTGTGGTTGCAGG
AGGCGGAGTGGGAGTCGGTGGTAGCGGTGTTTTCCAATGGCAAGGCATGG
CAGTTTTCTGAGTGGAAGCATAATACCCCCGTGGATCTTTTTCATCGATG
TACGTTGTTTTTCCGAGTTTTGTTAATGTGCAAAACGGAGGAGGGCAGGA
AAGGTTTACACACACTCACACACCAAACATATTTCCTGTCACTTTTTCTG
GAATCGTAGGCTTTGGGGCCGTGCTGAACTTCGACGACGACACAATCCGG
GGGGAGGTAAAGGGGTGGAACGTCAAGTTTTACAAGATCAACAAGTCCAA
GCGGCACATGGATGGCATTGCCGTCTCATCGTTTTGGAACCAGCTGACCG
AGTGGCTCAAGCTGCACAAGCCGTGGGTTCTCCAACCGCCGACCCCCAGG
GGGAGGAGATGAAAGGGAGGAGGTCTGGGGACTGTATGTTAAAAATTAAA
GGTAGCGGTATCAAAATGAGGAGGACTAAGAACACGTAAAGAAAAAATGT
GCCTGATTTTGCTG
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Coding sequence (CDS) from alignment at chr9:274395..276758+

>NO09G00770.1 ID=NO09G00770.1|Name=NO09G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr9:274395..276758+ (Nannochloropsis oceanica)
ATGGGGGATCCTCTCTCGGTGCTTCGAGAGTTTGTGTCATCCGGGCGCAC
GTGGAAGGAGGAGGGCGACGAGGTGGTATTTGGGGACGTGCGGTTTAAGA
AAGAGGAGGAGACTGCCTGGCGGCCTGCCAATCGACAAGGCTATTACAAG
CTAGGCGAACTCGTCATTTTGGTTGACCACGCTCACATGCCGTATCAACA
GTATCTACGAACGATGGGCGGGGTGTTGAAGCAACAGTCTTTTGTCAGTA
AATTGGACTTCGACAACTTGCTCAAGTACTTGCGGGGGGAGACTGCCACC
TCCAAACAGATTGAACAAAGCCGCTTGCTTTCCCGAGCGGCCATCGTCGT
CTCCCAAGCAGGAGCACTCAAGAGGCCCGCGGGTGGCGACTCTGCCCCAG
GCGCCTCGGACCGTCTCAACCTCCATTTAGGGGACGTGAGCCGTAGCACG
GGCCTGGATGCGCAGACGCTGCGGGAGCTGAAGCAGGTGTTGGAGACCAA
AAAAAAGAAAATAGAGGGGGGCGCAGGAGAGGAAGAGCTGGGGAAGGTGG
ACGGGAAGATGCACCGTCTCCTCAAGTCAGATGAGCGCCCAGTGCACGAC
CGGAATAGCGTTCTTCTCACCCCGACGGCCGACTACACTATCGCCCTGCG
CATGATCGAAACAGCGCAGAAGCGGGCCAAGGAGGCCAGTGGCAAAACAA
GGGGGGATGGGGAAGGGAGTGGAGGGGCGGGACGCACGTCGCAGTTTGAC
CCACGGCCAGGCGCTGTCGGCAGTGGTGCCTCGTCAGCGGCGGCGGCGGA
TTCGTCTCGCTTGCACCCGCCAATAATCATTGTGCCGAGCGACCCGTCTG
CCATGGTCAACATGACCAATATTGTTGATTTCCTCGAGAAGGCTCATTTT
GTCGGTCCGCAAGAACGCGGCAAGTCCAAGGATAGCCTCAAGCGAGTCAA
GGAGCTGACCATCAGTAAAGTATTAGAGGGGCAGCCCCGGCGGGTGAAGT
TCCGGGTAGTGGATAACCCGGTGTGGTTGCAGGAGGCGGAGTGGGAGTCG
GTGGTAGCGGTGTTTTCCAATGGCAAGGCATGGCAGTTTTCTGAGTGGAA
GCATAATACCCCCGTGGATCTTTTTCATCGATGCTTTGGGGCCGTGCTGA
ACTTCGACGACGACACAATCCGGGGGGAGGTAAAGGGGTGGAACGTCAAG
TTTTACAAGATCAACAAGTCCAAGCGGCACATGGATGGCATTGCCGTCTC
ATCGTTTTGGAACCAGCTGACCGAGTGGCTCAAGCTGCACAAGCCGTGGG
TTCTCCAACCGCCGACCCCCAGGGGGAGGAGATGA
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Synonyms
Publications