NO09G00210, NO09G00210 (gene) Nannochloropsis oceanica

Overview
NameNO09G00210
Unique NameNO09G00210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2940
Alignment locationchr9:113287..116296 -

Link to JBrowse

Properties
Property NameValue
DescriptionNuclear mrna splicing factor-associated protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:113287..116296 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO09G00210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00210.2NO09G00210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G00210.1NO09G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670878gene_4536Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101112g1gene2769Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00210.2NO09G00210.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G00210.1NO09G00210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00210 ID=NO09G00210|Name=NO09G00210|organism=Nannochloropsis oceanica|type=gene|length=2940bp
ATGGATGACCAAGCCAAGGCGGAGGCCATGAAACGGGCCAGGAGCATTGT
GGCCTCTCTTGGCATAAAGCTTTCCCGTCCCGCCCAACCTGCCTCTGCCC
CCACTCCCTCCACTACCGCCAGGTCTGTCCTTCACTCCGCTGCCCCTCCC
ACCACCAGCACCGTAGCTGCCTCTGCTCCGAGCAACAATTACCATAAAGA
GGAGGAAGAGCAGGAGGGTGCTGCCACCACCTCCTCTTCCTGCTCCTCAT
CCTACCTTTCTTCGGGCGCAGCTGCGATGCAACATGCCATAACCCCCTCT
CCTGTCTCTACGGGTCATCACAAGCCTTTACCCCCCCCGGAATCGGTCCT
TGAGAAAGTACAAAAGGTCCAAGAGAAATTGAAGGAGAGTCACGCGGCGT
TTGAGAAGGGAAGGTCGTGTATAGATCAGgtagggaggaagggaggggag
gacggaggggcggaggagggaggaagatggcaaggaagaaaaggaggtac
ttgaatgtcgctgagatcgctgaccaatttttgacctgccctgctttctc
ccctccctccctccctccctccctccctccctccctccctcctattctag
TCCGAACGCGATCGTCTCGCTCAAGCCAAGGCCAGGAACATGGCTTTCTT
ACGATCAAAATTGCAGGAGGAGCGTACCAAGAAATATGGTTTCGACAAGG
AGGGAGGCGGGGAGGGAGGGAAGGAGGGCGGAGGGAGAGGGAGGCGTCGG
TCACAATCCCGTTCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTC
TCGGTCTCCGCGCTGGAAAGGAGGGAAAAGGCAAGGAGATAGAGATGGTG
GTAGAGGGTGGGGAGGAGGAAGGGAGGGGAAGAAGAGGGCAAGGATGGCA
GGCCTGGGTGCGACTACTGTGAGCGAGACAGAGAGCAATTCGGTGTATGT
GGCGGGTTTACCGGCACAGGCGACCTGGGATCACTTAGgtgagaaagcag
ggtgaaagggagggagggagggaggaagggaggtagggagggagaggtac
ctatgcatggaagtcatcgtattgaattttattgaatttcttcccttcct
tcctccctccctccctccatcattccctttcctaccgtctattcgtcttc
ctcgtcctgtcgccgccgtcggccctcctttccatacgtccgccctgcat
tctttctccatgggtatcatcacactcttttccatcctcttccttcctcc
ctccctctctttccctcctatttgcctcctcatctatatactctacacac
acacatatatatatatatatatattcactcctcttcccggaactcatacc
tccttccaaatacttttaaaaaaaatattgaataaatcaaataactaaat
atatgaataaaacaaataattaaaatgtgaaaaaacaaatataaagacgc
cctttttgctccctatggccatctgcgccgcatcaagATTTATCGCGACG
CCCACGGGAAGCCCAAGGGAGATGCCCTCATTACATACGCCAAGCCCGGC
TCTGCCACCGCTGCTATAAAGAAGgtaactccctacattcctaccttcct
ctacccttatttgtgtgtacatatttttgattaaagaaatcattatttat
gtattcgtctattcacacaaacacacacaccacccatgcgtctgtcaata
gCTCAACGGGCATGTAATTGCGCCACAGCATTCTCTCGTCCTGAGCAAGG
CCGATTTCTCCTACAAAGAAGAAGGGAACAACGTACACGAAGGACTCGGC
TTCGACGATCACCTCGCCCATCCTGCGCAGGAGGAAGACGAGCAAGAGGA
CTACGAGGTGCTCCCTCCGGAATgtaagtatttatttctttcccttcctc
cctccctcccacgcacccttctgtccctcattcctcgtgttttggttgtt
attgttacagtgctcagtgcagatcccaattgatgggaaatatgtatcga
acaactgtataataaattattttataaataaattattttataaattgttc
gagtgggtgaatgaatgaatcaatatatacatgatcgaatgcatgaaaca
aatgaatagataaaataattcagtaaaatcaaataaatccacaaaataaa
tatatgaaagtggaaaaaatatataaaatggaaaaagagatgtgaaaaat
ataacaaatgaataaaataatttatcaaatgtggtgaaagaaaacatagg
taaatacacacatattgaatatcatagaagccaaaatacgatcacctaat
ttatgcttttcttcatttttctcttgacagGTGAAGCAGACAAATTCCCA
GTGGTCATCCTCCGTAACGTGTACGATCCTGATGAAACGGCGGAGGAAGT
CTTCGCTGACCTCGAGGCTGACATGCTACAAGAATGTGTACGCCACGGgt
atgcaagcactcctttcctttcctcccttctctcctcgccctcccttctg
ttcattgttctcttttccacccttccccccctacgcagCGAGGTGAAAAA
AATCCTCTCTCCCGAAGGCGACTACTATGCGGGCTGCGTGGCCGTCGTCT
TCGCTACCTTCGATGCAGCTCATGCCTGCGCCAAGGCCATGCATGGCCGA
TTTTTTGACGGGCGACAGATCGAGGTGGAGATGCAAGGGAAGGTGGAAAC
AAACAAGGTGATTGGGACGAGGATTGGAGGAGGGGAGGAAAGGGAGCAGG
GTAGGCAGGGGGAGAAGAGGGAGGGGAAGGAAGAAGAAAATGTGGAGGGG
GGCGAGGGGGTGGAAGTTTTCTTGAAGTCCTTAGAAGGGTAACCTGGCTC
AATGACTACTTCGGGGAAAGGGAGAGAAGAAGGGAGGGAGGAAAGGCAGA
CAAGCAAAAGAAAAAGCAACGACAACTAAAAAAGTGATAT
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protein sequence of NO09G00210.2

>NO09G00210.2-protein ID=NO09G00210.2-protein|Name=NO09G00210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MDDQAKAEAMKRARSIVASLGIKLSRPAQPASAPTPSTTARSVLHSAAPP
TTSTVAASAPSNNYHKEEEEQEGAATTSSSCSSSYLSSGAAAMQHAITPS
PVSTGHHKPLPPPESVLEKVQKVQEKLKESHAAFEKGRSCIDQSERDRLA
QAKARNMAFLRSKLQEERTKKYGFDKEGGGEGGKEGGGRGRRRSQSRSRS
RSRSRSRSRSRSPRWKGGKRQGDRDGGRGWGGGREGKKRARMAGLGATTV
SETESNSVYVAGLPAQATWDHLDALFAPYGHLRRIKIYRDAHGKPKGDAL
ITYAKPGSATAAIKKLNGHVIAPQHSLVLSKADFSYKEEGNNVHEGLGFD
DHLAHPAQEEDEQEDYEVLPPECEADKFPVVILRNVYDPDETAEEVFADL
EADMLQECVRHGEVKKILSPEGDYYAGCVAVVFATFDAAHACAKAMHGRF
FDGRQIEVEMQGKVETNKVIGTRIGGGEEREQGRQGEKREGKEEENVEGG
EGVEVFLKSLEG*
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protein sequence of NO09G00210.1

>NO09G00210.1-protein ID=NO09G00210.1-protein|Name=NO09G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MDDQAKAEAMKRARSIVASLGIKLSRPAQPASAPTPSTTARSVLHSAAPP
TTSTVAASAPSNNYHKEEEEQEGAATTSSSCSSSYLSSGAAAMQHAITPS
PVSTGHHKPLPPPESVLEKVQKVQEKLKESHAAFEKGRSCIDQSERDRLA
QAKARNMAFLRSKLQEERTKKYGFDKEGGGEGGKEGGGRGRRRSQSRSRS
RSRSRSRSRSRSPRWKGGKRQGDRDGGRGWGGGREGKKRARMAGLGATTV
SETESNSVYVAGLPAQATWDHLDLSRRPREAQGRCPHYIRQARLCHRCYK
EAQRACNCATAFSRPEQGRFLLQRRREQRTRRTRLRRSPRPSCAGGRRAR
GLRGAPSGM*
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Synonyms
Publications