NO09G00210.2, NO09G00210.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00210.2
Unique NameNO09G00210.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1707
Alignment locationchr9:113287..116296 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:113287..116296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G00210.2 vs.
Match: EWM27790.1 (nuclear mrna splicing factor-associated protein [Nannochloropsis gaditana])

HSP 1 Score: 249.2 bits (635), Expect = 2.700e-62
Identity = 116/140 (82.86%), Postives = 127/140 (90.71%), Query Frame = 0 
Query:  273 DALFAPYGHLRRIKIYRDAHGKPKGDALITYAKPGSATAAIKKLNGHVIAPQHSLVLSKADFSYKEEGNNVHEGLGFDDHLAHPAQEEDEQEDYEVLPPECEADKFPVVILRNVYDPDETAEEVFADLEADMLQECVRHG 413
            D LFAPYG LRRIK+YRDAHGKPKGDAL+TYA+PGS  AAIKKLNG+ +AP H L LS+ADFSYKEEG NVHEG+GFDDH+AHPAQEEDEQEDYE LPPECEADK+PVVILRNVYDP ETA+E FA+LE DMLQECVRHG
Sbjct:   73 DILFAPYGRLRRIKVYRDAHGKPKGDALVTYARPGSTAAAIKKLNGYALAPNHCLRLSQADFSYKEEGANVHEGIGFDDHMAHPAQEEDEQEDYETLPPECEADKYPVVILRNVYDPTETADEDFAELETDMLQECVRHG 212
The following BLAST results are available for this feature:
BLAST of NO09G00210.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27790.12.700e-6282.86nuclear mrna splicing factor-associated protein [N... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00210NO09G00210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00210.2NO09G00210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00210.2.cds1NO09G00210.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00210.2.cds2NO09G00210.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00210.2.cds3NO09G00210.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00210.2.cds4NO09G00210.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00210.2.cds5NO09G00210.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00210.2.cds6NO09G00210.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00210.2 ID=NO09G00210.2|Name=NO09G00210.2|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp
CACAGGGCCAGCGTCTTCATCTCTTTTCCGACCCCGGGCGGGCCCACCCA
GCACAAAGCGACGCAAGAGCATGGATGACCAAGCCAAGGCGGAGGCCATG
AAACGGGCCAGGAGCATTGTGGCCTCTCTTGGCATAAAGCTTTCCCGTCC
CGCCCAACCTGCCTCTGCCCCCACTCCCTCCACTACCGCCAGGTCTGTCC
TTCACTCCGCTGCCCCTCCCACCACCAGCACCGTAGCTGCCTCTGCTCCG
AGCAACAATTACCATAAAGAGGAGGAAGAGCAGGAGGGTGCTGCCACCAC
CTCCTCTTCCTGCTCCTCATCCTACCTTTCTTCGGGCGCAGCTGCGATGC
AACATGCCATAACCCCCTCTCCTGTCTCTACGGGTCATCACAAGCCTTTA
CCCCCCCCGGAATCGGTCCTTGAGAAAGTACAAAAGGTCCAAGAGAAATT
GAAGGAGAGTCACGCGGCGTTTGAGAAGGGAAGGTCGTGTATAGATCAGT
CCGAACGCGATCGTCTCGCTCAAGCCAAGGCCAGGAACATGGCTTTCTTA
CGATCAAAATTGCAGGAGGAGCGTACCAAGAAATATGGTTTCGACAAGGA
GGGAGGCGGGGAGGGAGGGAAGGAGGGCGGAGGGAGAGGGAGGCGTCGGT
CACAATCCCGTTCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTCT
CGGTCTCCGCGCTGGAAAGGAGGGAAAAGGCAAGGAGATAGAGATGGTGG
TAGAGGGTGGGGAGGAGGAAGGGAGGGGAAGAAGAGGGCAAGGATGGCAG
GCCTGGGTGCGACTACTGTGAGCGAGACAGAGAGCAATTCGGTGTATGTG
GCGGGTTTACCGGCACAGGCGACCTGGGATCACTTAGACGCCCTTTTTGC
TCCCTATGGCCATCTGCGCCGCATCAAGATTTATCGCGACGCCCACGGGA
AGCCCAAGGGAGATGCCCTCATTACATACGCCAAGCCCGGCTCTGCCACC
GCTGCTATAAAGAAGCTCAACGGGCATGTAATTGCGCCACAGCATTCTCT
CGTCCTGAGCAAGGCCGATTTCTCCTACAAAGAAGAAGGGAACAACGTAC
ACGAAGGACTCGGCTTCGACGATCACCTCGCCCATCCTGCGCAGGAGGAA
GACGAGCAAGAGGACTACGAGGTGCTCCCTCCGGAATGTGAAGCAGACAA
ATTCCCAGTGGTCATCCTCCGTAACGTGTACGATCCTGATGAAACGGCGG
AGGAAGTCTTCGCTGACCTCGAGGCTGACATGCTACAAGAATGTGTACGC
CACGGCGAGGTGAAAAAAATCCTCTCTCCCGAAGGCGACTACTATGCGGG
CTGCGTGGCCGTCGTCTTCGCTACCTTCGATGCAGCTCATGCCTGCGCCA
AGGCCATGCATGGCCGATTTTTTGACGGGCGACAGATCGAGGTGGAGATG
CAAGGGAAGGTGGAAACAAACAAGGTGATTGGGACGAGGATTGGAGGAGG
GGAGGAAAGGGAGCAGGGTAGGCAGGGGGAGAAGAGGGAGGGGAAGGAAG
AAGAAAATGTGGAGGGGGGCGAGGGGGTGGAAGTTTTCTTGAAGTCCTTA
GAAGGGTAACCTGGCTCAATGACTACTTCGGGGAAAGGGAGAGAAGAAGG
GAGGGAGGAAAGGCAGACAAGCAAAAGAAAAAGCAACGACAACTAAAAAA
GTGATAT
back to top

protein sequence of NO09G00210.2

>NO09G00210.2-protein ID=NO09G00210.2-protein|Name=NO09G00210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MDDQAKAEAMKRARSIVASLGIKLSRPAQPASAPTPSTTARSVLHSAAPP
TTSTVAASAPSNNYHKEEEEQEGAATTSSSCSSSYLSSGAAAMQHAITPS
PVSTGHHKPLPPPESVLEKVQKVQEKLKESHAAFEKGRSCIDQSERDRLA
QAKARNMAFLRSKLQEERTKKYGFDKEGGGEGGKEGGGRGRRRSQSRSRS
RSRSRSRSRSRSPRWKGGKRQGDRDGGRGWGGGREGKKRARMAGLGATTV
SETESNSVYVAGLPAQATWDHLDALFAPYGHLRRIKIYRDAHGKPKGDAL
ITYAKPGSATAAIKKLNGHVIAPQHSLVLSKADFSYKEEGNNVHEGLGFD
DHLAHPAQEEDEQEDYEVLPPECEADKFPVVILRNVYDPDETAEEVFADL
EADMLQECVRHGEVKKILSPEGDYYAGCVAVVFATFDAAHACAKAMHGRF
FDGRQIEVEMQGKVETNKVIGTRIGGGEEREQGRQGEKREGKEEENVEGG
EGVEVFLKSLEG*
back to top

mRNA from alignment at chr9:113287..116296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00210.2 ID=NO09G00210.2|Name=NO09G00210.2|organism=Nannochloropsis oceanica|type=mRNA|length=3010bp|location=Sequence derived from alignment at chr9:113287..116296- (Nannochloropsis oceanica)
CACAGGGCCAGCGTCTTCATCTCTTTTCCGACCCCGGGCGGGCCCACCCA
GCACAAAGCGACGCAAGAGCATGGATGACCAAGCCAAGGCGGAGGCCATG
AAACGGGCCAGGAGCATTGTGGCCTCTCTTGGCATAAAGCTTTCCCGTCC
CGCCCAACCTGCCTCTGCCCCCACTCCCTCCACTACCGCCAGGTCTGTCC
TTCACTCCGCTGCCCCTCCCACCACCAGCACCGTAGCTGCCTCTGCTCCG
AGCAACAATTACCATAAAGAGGAGGAAGAGCAGGAGGGTGCTGCCACCAC
CTCCTCTTCCTGCTCCTCATCCTACCTTTCTTCGGGCGCAGCTGCGATGC
AACATGCCATAACCCCCTCTCCTGTCTCTACGGGTCATCACAAGCCTTTA
CCCCCCCCGGAATCGGTCCTTGAGAAAGTACAAAAGGTCCAAGAGAAATT
GAAGGAGAGTCACGCGGCGTTTGAGAAGGGAAGGTCGTGTATAGATCAGG
TAGGGAGGAAGGGAGGGGAGGACGGAGGGGCGGAGGAGGGAGGAAGATGG
CAAGGAAGAAAAGGAGGTACTTGAATGTCGCTGAGATCGCTGACCAATTT
TTGACCTGCCCTGCTTTCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCTATTCTAGTCCGAACGCGATCGTCTCGCTCAAGCCAAG
GCCAGGAACATGGCTTTCTTACGATCAAAATTGCAGGAGGAGCGTACCAA
GAAATATGGTTTCGACAAGGAGGGAGGCGGGGAGGGAGGGAAGGAGGGCG
GAGGGAGAGGGAGGCGTCGGTCACAATCCCGTTCTCGGTCTCGGTCTCGG
TCTCGGTCTCGGTCTCGGTCTCGGTCTCCGCGCTGGAAAGGAGGGAAAAG
GCAAGGAGATAGAGATGGTGGTAGAGGGTGGGGAGGAGGAAGGGAGGGGA
AGAAGAGGGCAAGGATGGCAGGCCTGGGTGCGACTACTGTGAGCGAGACA
GAGAGCAATTCGGTGTATGTGGCGGGTTTACCGGCACAGGCGACCTGGGA
TCACTTAGGTGAGAAAGCAGGGTGAAAGGGAGGGAGGGAGGGAGGAAGGG
AGGTAGGGAGGGAGAGGTACCTATGCATGGAAGTCATCGTATTGAATTTT
ATTGAATTTCTTCCCTTCCTTCCTCCCTCCCTCCCTCCATCATTCCCTTT
CCTACCGTCTATTCGTCTTCCTCGTCCTGTCGCCGCCGTCGGCCCTCCTT
TCCATACGTCCGCCCTGCATTCTTTCTCCATGGGTATCATCACACTCTTT
TCCATCCTCTTCCTTCCTCCCTCCCTCTCTTTCCCTCCTATTTGCCTCCT
CATCTATATACTCTACACACACACATATATATATATATATATATTCACTC
CTCTTCCCGGAACTCATACCTCCTTCCAAATACTTTTAAAAAAAATATTG
AATAAATCAAATAACTAAATATATGAATAAAACAAATAATTAAAATGTGA
AAAAACAAATATAAAGACGCCCTTTTTGCTCCCTATGGCCATCTGCGCCG
CATCAAGATTTATCGCGACGCCCACGGGAAGCCCAAGGGAGATGCCCTCA
TTACATACGCCAAGCCCGGCTCTGCCACCGCTGCTATAAAGAAGGTAACT
CCCTACATTCCTACCTTCCTCTACCCTTATTTGTGTGTACATATTTTTGA
TTAAAGAAATCATTATTTATGTATTCGTCTATTCACACAAACACACACAC
CACCCATGCGTCTGTCAATAGCTCAACGGGCATGTAATTGCGCCACAGCA
TTCTCTCGTCCTGAGCAAGGCCGATTTCTCCTACAAAGAAGAAGGGAACA
ACGTACACGAAGGACTCGGCTTCGACGATCACCTCGCCCATCCTGCGCAG
GAGGAAGACGAGCAAGAGGACTACGAGGTGCTCCCTCCGGAATGTAAGTA
TTTATTTCTTTCCCTTCCTCCCTCCCTCCCACGCACCCTTCTGTCCCTCA
TTCCTCGTGTTTTGGTTGTTATTGTTACAGTGCTCAGTGCAGATCCCAAT
TGATGGGAAATATGTATCGAACAACTGTATAATAAATTATTTTATAAATA
AATTATTTTATAAATTGTTCGAGTGGGTGAATGAATGAATCAATATATAC
ATGATCGAATGCATGAAACAAATGAATAGATAAAATAATTCAGTAAAATC
AAATAAATCCACAAAATAAATATATGAAAGTGGAAAAAATATATAAAATG
GAAAAAGAGATGTGAAAAATATAACAAATGAATAAAATAATTTATCAAAT
GTGGTGAAAGAAAACATAGGTAAATACACACATATTGAATATCATAGAAG
CCAAAATACGATCACCTAATTTATGCTTTTCTTCATTTTTCTCTTGACAG
GTGAAGCAGACAAATTCCCAGTGGTCATCCTCCGTAACGTGTACGATCCT
GATGAAACGGCGGAGGAAGTCTTCGCTGACCTCGAGGCTGACATGCTACA
AGAATGTGTACGCCACGGGTATGCAAGCACTCCTTTCCTTTCCTCCCTTC
TCTCCTCGCCCTCCCTTCTGTTCATTGTTCTCTTTTCCACCCTTCCCCCC
CTACGCAGCGAGGTGAAAAAAATCCTCTCTCCCGAAGGCGACTACTATGC
GGGCTGCGTGGCCGTCGTCTTCGCTACCTTCGATGCAGCTCATGCCTGCG
CCAAGGCCATGCATGGCCGATTTTTTGACGGGCGACAGATCGAGGTGGAG
ATGCAAGGGAAGGTGGAAACAAACAAGGTGATTGGGACGAGGATTGGAGG
AGGGGAGGAAAGGGAGCAGGGTAGGCAGGGGGAGAAGAGGGAGGGGAAGG
AAGAAGAAAATGTGGAGGGGGGCGAGGGGGTGGAAGTTTTCTTGAAGTCC
TTAGAAGGGTAACCTGGCTCAATGACTACTTCGGGGAAAGGGAGAGAAGA
AGGGAGGGAGGAAAGGCAGACAAGCAAAAGAAAAAGCAACGACAACTAAA
AAAGTGATAT
back to top

Coding sequence (CDS) from alignment at chr9:113287..116296-

>NO09G00210.2 ID=NO09G00210.2|Name=NO09G00210.2|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr9:113287..116296- (Nannochloropsis oceanica)
ATGGATGACCAAGCCAAGGCGGAGGCCATGAAACGGGCCAGGAGCATTGT
GGCCTCTCTTGGCATAAAGCTTTCCCGTCCCGCCCAACCTGCCTCTGCCC
CCACTCCCTCCACTACCGCCAGGTCTGTCCTTCACTCCGCTGCCCCTCCC
ACCACCAGCACCGTAGCTGCCTCTGCTCCGAGCAACAATTACCATAAAGA
GGAGGAAGAGCAGGAGGGTGCTGCCACCACCTCCTCTTCCTGCTCCTCAT
CCTACCTTTCTTCGGGCGCAGCTGCGATGCAACATGCCATAACCCCCTCT
CCTGTCTCTACGGGTCATCACAAGCCTTTACCCCCCCCGGAATCGGTCCT
TGAGAAAGTACAAAAGGTCCAAGAGAAATTGAAGGAGAGTCACGCGGCGT
TTGAGAAGGGAAGGTCGTGTATAGATCAGTCCGAACGCGATCGTCTCGCT
CAAGCCAAGGCCAGGAACATGGCTTTCTTACGATCAAAATTGCAGGAGGA
GCGTACCAAGAAATATGGTTTCGACAAGGAGGGAGGCGGGGAGGGAGGGA
AGGAGGGCGGAGGGAGAGGGAGGCGTCGGTCACAATCCCGTTCTCGGTCT
CGGTCTCGGTCTCGGTCTCGGTCTCGGTCTCGGTCTCCGCGCTGGAAAGG
AGGGAAAAGGCAAGGAGATAGAGATGGTGGTAGAGGGTGGGGAGGAGGAA
GGGAGGGGAAGAAGAGGGCAAGGATGGCAGGCCTGGGTGCGACTACTGTG
AGCGAGACAGAGAGCAATTCGGTGTATGTGGCGGGTTTACCGGCACAGGC
GACCTGGGATCACTTAGACGCCCTTTTTGCTCCCTATGGCCATCTGCGCC
GCATCAAGATTTATCGCGACGCCCACGGGAAGCCCAAGGGAGATGCCCTC
ATTACATACGCCAAGCCCGGCTCTGCCACCGCTGCTATAAAGAAGCTCAA
CGGGCATGTAATTGCGCCACAGCATTCTCTCGTCCTGAGCAAGGCCGATT
TCTCCTACAAAGAAGAAGGGAACAACGTACACGAAGGACTCGGCTTCGAC
GATCACCTCGCCCATCCTGCGCAGGAGGAAGACGAGCAAGAGGACTACGA
GGTGCTCCCTCCGGAATGTGAAGCAGACAAATTCCCAGTGGTCATCCTCC
GTAACGTGTACGATCCTGATGAAACGGCGGAGGAAGTCTTCGCTGACCTC
GAGGCTGACATGCTACAAGAATGTGTACGCCACGGCGAGGTGAAAAAAAT
CCTCTCTCCCGAAGGCGACTACTATGCGGGCTGCGTGGCCGTCGTCTTCG
CTACCTTCGATGCAGCTCATGCCTGCGCCAAGGCCATGCATGGCCGATTT
TTTGACGGGCGACAGATCGAGGTGGAGATGCAAGGGAAGGTGGAAACAAA
CAAGGTGATTGGGACGAGGATTGGAGGAGGGGAGGAAAGGGAGCAGGGTA
GGCAGGGGGAGAAGAGGGAGGGGAAGGAAGAAGAAAATGTGGAGGGGGGC
GAGGGGGTGGAAGTTTTCTTGAAGTCCTTAGAAGGGTAA
back to top
Synonyms
Publications