NO08G03540, NO08G03540 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G03540 vs. NCBI_GenBank
Match: EWM26834.1 (tbc1 domain family member 23 [Nannochloropsis gaditana]) HSP 1 Score: 389.4 bits (999), Expect = 3.500e-104 Identity = 268/717 (37.38%), Postives = 336/717 (46.86%), Query Frame = 0 Query: 416 VFYCEKMRIDYEPEMGAAYGALTLALLDVGGLREGTKEEAAAIVGRFHTLCGWLLPYLLLMPQAREGYVREVHSEFRLLLTYHAPLLVQHLDRGRPGWELPPS-LAVEASSSSFWAKQEQIRQEAEAENIVGTLEGRWSGSNCISGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGIIPTSWLLGHCIGTALLSPPL--SLSSSSSSSLPKHNYHL-------DCLLSLMDGCLLRGDRFLGLFLTAALLLRHKTDLLSLQGPALRSRLDQLLLGVGTAGGGEGVAQLFLSSTYPSPPTSCSLQSLSSAITRWLEEAERLDRITPISFRVHLTALEAFARQNTDGVL---------SP---------------------LPPSLPPSCLSAAXXXXXXXXXXXXXXXXXXXXAFQLIALTLPKQQEVDALLQESPLPHSQPLASTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKWALGTPERCRRQLQQAQGDPDTLALLTTKICLTVTPEEVAPALCLPSXXXXXXXXXXXS-------------------------------------CSSLRFVALDCRPQEQVSMGGRFPTAYHLAPSRLEDPEEIIKLLVELEGFKGSMHLLLVGTGLMMSGRIGSGGGDGREMEGRRGG 1056 +FYC+ R+D++PEM AAYGAL + L GG EG A +VGRFH C WLLP+L L +R+G+++ VH+ FRLLL YHAPLLVQHLDRGR GWE PP+ E SSS W QEQ RQEAE E +VG LEGRW+ S GGI+P+SWL+GHC+G+ LL+PP SL+S +SS+ P H D LL+L++ CLLRGDRF GLFLT AL LRHKT++L LQG ALR L++L+ GG+G+AQ + S +P T S + S+A+ RW+EEA R+DR TPISFRV+LTA E +R+ +L SP P P + L +LTLP Q+ +DAL SP S ++WALG P R RQL+QA+ D D +ALLTT++CLTVTPEE ALCLPS + SSLR++ALDCRP+E V+M GRFPTAYH+ PSRL+DPEEI +LL LE FKGS HLLL+GTG SGGG + GG Sbjct: 1 MFYCKNFRVDFQPEMAAAYGALLVVLGWEGG-DEGGLPSNAEVVGRFHAFCTWLLPHLTLPSWSRDGHLQRVHAAFRLLLNYHAPLLVQHLDRGRAGWEAPPARCGGEGSSSQSWGTQEQARQEAEVEGMVGALEGRWAKSR--------------------DAGRCGRQPGVVPGSGRGTSIVEVERMKVASREKKDAANDGDSNHPVASLQEGPSPSTKAGREGHGSSGDSGGIVPSSWLMGHCLGSPLLAPPCQPSLTSPASSAAPPHAEETGKSRDDEDALLALVEACLLRGDRFYGLFLTTALFLRHKTEILCLQGSALRLYLEELV------AGGKGIAQCYQPSLSGTPSTMTSTSASSTAVARWMEEAARVDRSTPISFRVNLTASELLSREKAASLLGSPGSVPEYSPRAEAADTTATTATAIPAGADATSPQGPEGAMIGLQKGIGAEHPPSACTQEQRAYDVDLSSLTLPLQRLIDAL---SPRVTDTACPSPSTPSSVGSMGPLPSRRSDQGQNVDTVTLGSFRWALGGPAREERQLRQARDDADLMALLTTQLCLTVTPEEAVHALCLPSQSRPNACVRRDAHSEAASSGVTACSTDLGAHSIPSHDGSEDPAAFPVDRLSSLRYLALDCRPKEHVAM-GRFPTAYHVDPSRLDDPEEITRLLATLEPFKGSRHLLLMGTG-------ASGGGLAPAVPKEGGG 679
BLAST of NO08G03540 vs. NCBI_GenBank
Match: XP_005855621.1 (tbc1 domain family member 23-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20739.1 tbc1 domain family member 23-like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 132.9 bits (333), Expect = 5.900e-27 Identity = 83/183 (45.36%), Postives = 100/183 (54.64%), Query Frame = 0 Query: 910 YKWALGTPERCRRQLQQAQGDPDTLALLTTKICLTVTPEEVAPALCLPSXXXXXXXXXXXS-------------------------------------CSSLRFVALDCRPQEQVSMGGRFPTAYHLAPSRLEDPEEIIKLLVELEGFKGSMHLLLVGTGLMMSGRIGSGGGDGREMEGRRGG 1056 ++WALG P R RQL+QA+ D D +ALLTT++CLTVTPEE ALCLPS + SSLR++ALDCRP+E V+M GRFPTAYH+ PSRL+DPEEI +LL LE FKGS HLLL+GTG SGGG + GG Sbjct: 11 FRWALGGPAREERQLRQARDDADLMALLTTQLCLTVTPEEAVHALCLPSQSRPNACVRRDAHSEAASSGVTACSTDLGAHSIPSHDGSEDPAAFPVDRLSSLRYLALDCRPKEHVAM-GRFPTAYHVDPSRLDDPEEITRLLATLEPFKGSRHLLLMGTG-------ASGGGLAPAVPKEGGG 185
BLAST of NO08G03540 vs. NCBI_GenBank
Match: EWM26810.1 (translation elongation factor g [Nannochloropsis gaditana]) HSP 1 Score: 100.9 bits (250), Expect = 2.500e-17 Identity = 91/292 (31.16%), Postives = 136/292 (46.58%), Query Frame = 0 Query: 10 GSSLDDIFGEIDETLGGEEGTLTAGSSRSLVPTTSMGDASLTDMLKDVL-EEKGNAEAKTAARPPPVTALPSTSGASASASTTDSGSLDELLKETGLGGEGCTDDNFDDIFGGVESDTADTTTLTTKNGDAVNQPAQAGVSVLESSGA--------------WKELDANERQDFLKWLEEDDFTQGLDALKLTAAVVSPISTIATETSSRPTSSSMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRPSSPPFVVPSTPEEILSRIRSMLG-RNKEAAAM 286 G L+ + GEID TLGG+ + +LVPTTSMG+ASLTD+L+D+L E++ E + + +A A A ST LD+LLKETGL ++F+DIFG + G + A++ V V E++ + W++LDA ERQDFLKWLEEDD TQGL+A PI + E+ + +++++P +S +PSTP++ L+ IR+MLG +KE ++ Sbjct: 850 GGGLNGVLGEIDATLGGDV------DASNLVPTTSMGEASLTDLLQDLLTEDQREGEERRVSDRGSRSAADENLSARAETST-----LDDLLKETGLDDRA---EDFEDIFG---------SACVNAGGCSAGGGARSSVEVGETAASSRMGVGKEDSAARTWRDLDAAERQDFLKWLEEDDCTQGLEAPFQVPTRTPPIDGLKDESVAHTSAAALPSPLPVSSPGESRAGSVGISCSFEQTAVGVSLACP-------ASASSAVTLPSTPKDTLAMIRAMLGIEHKEEGSL 1111
BLAST of NO08G03540 vs. NCBI_GenBank
Match: XP_002290533.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92285.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 76.6 bits (187), Expect = 5.000e-10 Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 0 Query: 922 RQLQQAQGDPDTLALLTTKICLTVTPEEVAPALCLPSXXXXXXXXXXXSC----SSLRFVALDCRPQEQVSMGGRFPTAYHLAPSRLEDPEEIIKLLVELEGFKGSMHLLLVGTG 1033 R+ + A+ D ++ K+ L V+P EV P +C S S+L+F +DCRP+ GRFPTA +++P +L+DP+E+ KLL E +G++H+ ++G G Sbjct: 981 RRKKYAKSTADMMSHTNIKVALEVSPTEVLPVICTTKGHNPSTGGKITSRFASESALKFYLIDCRPESIAKEQGRFPTAVNMSPQKLQDPDEVQKLLDMFEALRGAVHICIMGEG 1095
BLAST of NO08G03540 vs. NCBI_GenBank
Match: CBJ33932.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 69.3 bits (168), Expect = 8.000e-8 Identity = 190/804 (23.63%), Postives = 263/804 (32.71%), Query Frame = 0 Query: 298 GNDKCSSSSPCTVNPLHLKLLCAEYPGGLPPSLRPYLWFHLIPPHKLLS-REFQYQQERGREERGEDRLHYRHQVPNSVVVRRDAAAVARALLDEE--GREYEGG------------KEERRNVLAADIERGLVFYCEKMRIDYEPEMGAAYGALTLALLDVGGLREGTKEEAAAIVGRFHTLCGWLLPYL--LLMPQAREGYVREVHSEFRLLLTYHAPLLVQHLDRGRPGWELPPSLAVEASSSSFWAKQEQIRQEAEAENIVGTLEGRWSGSNCISGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGIIPTSWLLGHCIGTALLSPPLSLSSSSS--SSLPKHNYHLDCLLSLMDGCLLRGDRFLGLFLTAALLLRHKTDLLSLQGPALRSRLDQLLLGVGTAGGGEGVAQLFLSSTYPSPPTSCSL-----QSLSSAITRWLEEAERLDRITPISFRVHLTALEAFARQNTDGVLSPLPPSLPPSCLSAAXXXXXXXXXXXXXXXXXXXXAFQLIALTLPKQQEVDALLQESPLPHSQPLASTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKWALGTPE-RCRRQLQQAQGDPDTLALLTTKICLTVTPEEVAPAL---------------------CLPSXXXXXXXXXXXSCSSLRFVALDCRPQEQVSMGGRFPTAYHLAPSRLEDPEEII-KLLVELEGFKGSMHLLLVGTGLMMSGRIGSGGGDGREMEGRRG 1055 G D + + +++ LCA G LPP LRP +W L+ + S F + R RE+ V + +R D A+AR L D++ E EGG ++ LA DIE L FYC + YEP + A G L LD A A+ + L G + +L L R+ H L TYH P LVQHL+R PGWE+P +S+ A+ + QEA A +V LE G XXXXXXXX G L+ P L ++++++ +S P L LL L D L+R D+ G GP LR L + L SP SL +SL EEAE LD TP SFR HL + A + + + A A P P + A T+ L P RQ ++ P L+L ++CL V+ +E+ + XXXXXX L F A+DCRP++QV GRFPTAYHL PS +E+PEE+ K++ E + H+ L+G+G G GG+G ++ G G Sbjct: 132 GGDSQEEGTAAADDVGYVRRLCAATGGFLPPDLRPVVWGLLLGRGRRPSDAGFLKWRARRREDLAAGAAD-APAVSYKLDLRNDCLALARRLCDDDNVAGENEGGGADNGXXXXXXXAKKDPEALAFDIEEVLTFYCTRRSEAYEPVLCALVGPLFSMGLD-----------APAVSAMLNPLVGSVTLFLGRGLTHAVRDLAWAHAHRRLHDLCTYHDPELVQHLNRSFPGWEMP-----LPGASASHAETSALDQEASA--MVDDLESSLQG------------------------------------------------------------------FAPRRRSMKAGSTAQAEXXXXXXXXXXXXXXXXXXXXXRAAGEGLVEPSLLVAANAALGASAP-----LGRLLPLWDYLLVRHDKHFGFXXXXXXXXXXXXXXXXXTGPQLRLLLAETL----------------------SPSAMASLLVDGEESLEG------EEAEALDLATPESFRHHLALIGEIAEAEHE------------AAVRARAQRRVEGGSDGPDGKAAAVPASSGSKEGXXXXXXXXXXXXXXPRPQAAGQAGTEAASKGLGHPSLLRMRTMMKTAGDKLAADLKNLKLARPNPENSRQSREDLAPPTELSL--PQLCLAVSAKELVAGVSGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXGALFRQRQPLAFFAVDCRPKQQVD-AGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAGGNGHQVGGGIG 802 The following BLAST results are available for this feature:
BLAST of NO08G03540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G03540 ID=NO08G03540|Name=NO08G03540|organism=Nannochloropsis oceanica|type=gene|length=3168bpback to top protein sequence of NO08G03540.1 >NO08G03540.1-protein ID=NO08G03540.1-protein|Name=NO08G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1056bpback to top Synonyms
Publications
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