NO08G03520, NO08G03520 (gene) Nannochloropsis oceanica

Overview
NameNO08G03520
Unique NameNO08G03520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1761
Alignment locationchr8:981416..983176 -

Link to JBrowse

Properties
Property NameValue
Descriptionglutamate tRNA synthetase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:981416..983176 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000049tRNA binding
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0043039tRNA aminoacylation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR008925aa-tRNA-synth_I_codon-bd
IPR020058Glu/Gln-tRNA-synth_Ib_cat-dom
IPR000924Glu/Gln-tRNA-synth
Homology
BLAST of NO08G03520 vs. NCBI_GenBank
Match: EWM26798.1 (Aminoacyl-tRNA synthetase, class I, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 902.9 bits (2332), Expect = 5.200e-259
Identity = 452/540 (83.70%), Postives = 486/540 (90.00%), Query Frame = 0
Query:   52 KQRLLQQHQASTN----FARRMTTCMAAVRVRFAPSPTGTLHVGGARTALYNYLVARQSKDGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKPPQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLNYLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHLRALSDEELVPLVEAQLISAGVAKEGAGEDGKTFVVHATQVAKGSMELVNDATTIVGDVLTYPLASTLEAGEAETLVAEGLWDMAREVVRAYEANEMPTGGEEDFQVLWKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLLHLADKAAVNMVGLPARIGELKEVLSKHPAE-KEPVAG 587
            KQ L Q  Q  ++    FARRM+T MAAVRVRFAPSPTGTLHVGGARTALYNYLVARQ KDG FVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERID+YKK+AQQLL+SGDAYPCFC+EEELE KR+AAEAAGKPPQYDRTWRDADP  VK++++AGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYP PKYAHCSLILGEDRSKLSKRHGATSVDQF+A+GFLPDAMLNYLALLGWNDGTEQEVF R ELI +FSLNRVVKSPSVFDMAKLRW+NGQHLRAL DE LVPLV A L   G+ K GA  +G  FV +ATQVAKGSMELVNDA TIVGDVLTYPL  TL +GEA+ LVAEGLW+MAREVV A+EANEMP G EEDF  LWKAW+KAVGKKMG+KGKQLFHPIRLALTGRMSGPDVGEQ+++LHLA+  A ++V LP RI +L+E+L K P E KEPVAG
Sbjct:   55 KQPLQQIDQPKSSPDALFARRMSTLMAAVRVRFAPSPTGTLHVGGARTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGA--EGAAFVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLASGEADALVAEGLWEMAREVVSAFEANEMPRGKEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATSVVDLPTRIEKLREILRKAPVEAKEPVAG 592          
BLAST of NO08G03520 vs. NCBI_GenBank
Match: CBJ28170.1 (Glutamyl-tRNA Synthetase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 649.0 bits (1673), Expect = 1.400e-182
Identity = 324/502 (64.54%), Postives = 392/502 (78.09%), Query Frame = 0
Query:   74 AAVRVRFAPSPTGTLHVGGARTALYNYLVARQSKDGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKPPQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLNYLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHLRALSDEELVPLVEAQLISAGVAKEGAGEDGKTFVVHATQVAKGSMELVNDATTIVGDVLTYPLASTLEAGEAETLVAEGLWDMAREVVRAYEANEMPTGGEEDFQVLWKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLLHLADKAAVNMVGLPARIGELKEVLS 576
            A VRVRFAPSPTGTLHVGGARTAL+N+L A+ +  G F+LRIEDTD ARS+RESEESMLADLR+LGL+WDEGPDK G VGPYRQSER +IYK++A +L+++G AYPCFC+EEEL  KR+ AE   + PQYD TWRDADP EVK +M+ G PYT RFKV  G+R+ I D VRG V WDA+ATVGDFILLRS+G+PVYNFCVAVDDA MGIT V+RAEEHLTN+LRQCLIL+AL++P P+YAHCSLILGEDRSKLSKRHGATSV QF+ +GFLP AM NYL+LLGWNDGTE+E+F   EL + F L RVVKS +VFDM KL+W+NGQHLRAL+ EELVP+V + L+ AGV K+  G     FV+ A  + +GS+ELV DA +   D+L Y    T+ + E+  LV +G  ++   +V  ++A EMP  G EDF   +K WIKA GK + +KGK+LFHPIRLALTG MSGPD+GEQ+KLL LA +  V  V L ARI  LK  L+
Sbjct:   71 ADVRVRFAPSPTGTLHVGGARTALFNFLQAKNA-GGKFILRIEDTDEARSSRESEESMLADLRWLGLEWDEGPDKGGEVGPYRQSERGEIYKEMADKLVEAGWAYPCFCTEEELIAKREQAENKNEAPQYDGTWRDADPAEVKAKMEEGVPYTYRFKVPKGKRIVIQDLVRGQVAWDAEATVGDFILLRSTGVPVYNFCVAVDDAQMGITHVVRAEEHLTNSLRQCLILDALEFPRPQYAHCSLILGEDRSKLSKRHGATSVGQFRQQGFLPSAMKNYLSLLGWNDGTEKEIFTEEELHEAFDLRRVVKSSAVFDMTKLKWMNGQHLRALAVEELVPMVGSTLVEAGVCKDAGG----PFVMSAATLVQGSLELVTDAISQTQDMLGYKFDETISSEESTELVGDGFSEVVAAIVADFDAGEMPKPGAEDFSPAFKKWIKAKGKALTRKGKRLFHPIRLALTGSMSGPDIGEQLKLLELASEEGVENVSLAARIETLKAWLA 567          
BLAST of NO08G03520 vs. NCBI_GenBank
Match: XP_005718553.1 (Glutamyl-tRNA Synthetase, chloroplast [Chondrus crispus] >CDF38648.1 Glutamyl-tRNA Synthetase, chloroplast [Chondrus crispus])

HSP 1 Score: 614.0 bits (1582), Expect = 4.800e-172
Identity = 315/535 (58.88%), Postives = 397/535 (74.21%), Query Frame = 0
Query:   45 AITRPFLKQRLLQQHQASTNFARRMTTCMAAVRVRFAPSPTGTLHVGGARTALYNYLVARQSKDGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKPPQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLNYLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHLRALSDEELVPLVEAQLISAGVAKEGAGEDGKTFVVHATQVAKGSMELVNDATTIVGDVLTYPLASTLEAGEAETLVAE--GLWDMAREVVRAYEANEMPTGGE-EDFQVLWKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLLHLADK--AAVNMVGLPARIGELKEVL 575
            +++RP L +    + +     +  +      VRVRFAPSPTG LHVGGARTALYN+L+ARQ+K GAF++R+EDTD  RSTRESE+ +L DL +LGL WDEGP   G  GPYRQSER  IY ++A +L+  G AYPCFC+EEEL+ KR+ AE  G+PPQYD TWRDADP EVKKR+D GE YTVRFKV  G RV IDDAVRG V WDAD+TVGDFI+LRS+G+PVYNFCVAVDDALMG++TV+RAEEHLTNTLRQ LIL AL +  P+YAHCSLILG DRSKLSKRHGATSV  F+ EG+LP AM+NYLA+LGWNDGTE+E++   ELI+ F ++R+ KSP++FD  KLR+INGQHLRAL  +EL  LV A+   +GV  +    D       A  + +GS+ELVNDA   +     YPL  TL +GEA+ L+ E  G  ++A   +RAY+A E+P G + E+ +  WK W+KAVGK+ G+KGK+LFHP+RLALTG+MSGPDVGE +++L+L +K  AA + V L  R+  L+  L
Sbjct:   30 SLSRPVLWRSAALRSRRFATPSATVAPATKQVRVRFAPSPTGALHVGGARTALYNWLLARQTK-GAFLVRVEDTDVVRSTRESEDMVLEDLTWLGLHWDEGPRVGGDRGPYRQSERSTIYVELADKLVREGKAYPCFCTEEELDRKREEAEREGRPPQYDGTWRDADPEEVKKRIDNGEQYTVRFKVPSGSRVIIDDAVRGKVAWDADSTVGDFIILRSTGVPVYNFCVAVDDALMGVSTVLRAEEHLTNTLRQVLILRALDFETPEYAHCSLILGSDRSKLSKRHGATSVTLFREEGYLPVAMINYLAMLGWNDGTEKEIYTVEELIEVFDIHRITKSPAMFDGDKLRYINGQHLRALPSKELEDLVLAEWKLSGVFNDTLEAD-SPLAQAAVALVRGSLELVNDANEEMQKAFAYPLDETLASGEADELIGEDGGFNEVASAALRAYDAGELPIGDDGEEHKGKWKKWVKAVGKEYGRKGKRLFHPLRLALTGKMSGPDVGEILQILYLTEKGEAATSFVPLAERMEALRNKL 562          
BLAST of NO08G03520 vs. NCBI_GenBank
Match: CEM22119.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 590.5 bits (1521), Expect = 5.700e-165
Identity = 297/504 (58.93%), Postives = 374/504 (74.21%), Query Frame = 0
Query:   76 VRVRFAPSPTGTLHVGGARTALYNYLVARQSKDGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKPPQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLNYLALLGWND--GTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHLRALSDEELVPLVEAQLISAGVAKEGAGEDGKTFVVHATQVAKGSMELVNDATTIVGDVLTYPLASTLEAGEAETLVAEGLWDMAREVVRAYEANEMPTGGEED---FQVLWKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLLHLADKAAVNMVGLPARIGELKEVL 575
            VRVRFAPSPTG+LHVGGARTALYNYL+A+Q+K G FV+R+EDTDTARSTRESE  ++ DLR+LGL+ +EGP      GPYRQSER  IYK +A +L+ +G AYPCFC+++ELE  R+ AE  G+PP YD TWRDADP E+ K  + G PYT+RF+V  G+RV ++D VRG V WDA + VGDFI+LRSSGMPVYNFCVAVDDALM IT VIRAEEHL+NTLRQ LIL+ L YP P+YAHCSLILG DRSKLSKRHGATSV QF+ +G+LP A+ NYLALLGWN+  GTE+E++   EL+  FSL+RV  S +VFD+ KL W+N QHL+A     ++  +  QL  AG+   G  E    F   A  + +  ++L ++A  +V  +L +PL  T+ +GEA  L+ +G  D+AR VV A+++  +PTG   D   F+  WK W+K VGK +G+KGK+LFHPIRLALTGRMSGPDVG+QV+LL LA K  V  V L  RIG+L+E L
Sbjct:  124 VRVRFAPSPTGSLHVGGARTALYNYLLAKQTK-GKFVIRVEDTDTARSTRESENGIMEDLRWLGLEANEGPGTESKYGPYRQSERTHIYKDMADRLVQAGLAYPCFCTDQELEAMRQRAEEEGRPPHYDGTWRDADPDEIAKMKEQGVPYTIRFRVPSGKRVTVNDHVRGEVSWDAGSAVGDFIILRSSGMPVYNFCVAVDDALMEITHVIRAEEHLSNTLRQLLILDGLGYPAPEYAHCSLILGTDRSKLSKRHGATSVGQFREQGYLPQALNNYLALLGWNEGTGTEKEIYTMDELVSSFSLDRVGSSGAVFDLQKLNWVNSQHLKAQDPALILEQLGRQLDKAGI---GGNEGTGGFRELAVDMVREPLQLAHEAPGLVSALLEHPLDDTISSGEASELLEDGFVDVARAVVEAHDSGALPTGDGRDGAEFESAWKGWVKNVGKSLGRKGKRLFHPIRLALTGRMSGPDVGQQVRLLSLAVKEGVPCVCLDDRIGKLREWL 623          
BLAST of NO08G03520 vs. NCBI_GenBank
Match: EJK50060.1 (hypothetical protein THAOC_31011 [Thalassiosira oceanica])

HSP 1 Score: 587.8 bits (1514), Expect = 3.700e-164
Identity = 313/549 (57.01%), Postives = 386/549 (70.31%), Query Frame = 0
Query:   77 RVRFAPSPTGTLHVGGARTALYNYLVARQSK------DGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGA-VGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKPPQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLNYLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHLRALSDEELVPLVEAQLISAGVAKEGAGEDGK-TFVVHATQVAKGSMELVNDATTIVGDVLTYPLASTL----EAGEAETLVAEG-LWDMAREVVRAYEANEMPT-------------------------GGEEDFQVLWKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLLHLA--DKAAVN-----MVGLPARIGELKEVLSKHPAE 581
            R+RFAPSPTG+LHVGGARTALYN+LVA++ +      +G FVLR+EDTD ARST+ESE+S+LADL +LGL WDEGPD P A  GPYRQSER  +Y K+AQ L+D G AYPCFC+ EELEE +   EA G PP+YD TWRDADP  VK++M AG+PYTVRFKV  G RV IDDAVRGTV WDA+ATVGDFILLRSSG+PVYNFCVAVDDA MGITTVIRAEEHLTNTLRQ LIL+AL  P P+YAHCSLILGED+ KLSKRHGATS +QF+ +GFLPDAM+NYLALLGWNDGT+ E+F R ELI+ F ++R+VKSPSVFDM KL+W+N QHL+A+  EE+  LVE QL    + KEGA +  K  FV   T +AK  ME + DA T    VL Y L +T     + GEA+ ++  G  +++A  V+  +++   PT                         G E  +   +KA +K++ K M  KGK LFHP+RLALTG MSG DV +Q+ LL ++  D +A+N     +V    R+  L++     P E
Sbjct:  125 RMRFAPSPTGSLHVGGARTALYNWLVAKKGQLDHPNTEGGFVLRVEDTDLARSTKESEDSVLADLSWLGLTWDEGPDMPLAKYGPYRQSERSSLYSKLAQTLIDEGKAYPCFCTAEELEEMKVRMEAEGIPPRYDGTWRDADPALVKEKMAAGDPYTVRFKVPDGVRVVIDDAVRGTVSWDAEATVGDFILLRSSGVPVYNFCVAVDDASMGITTVIRAEEHLTNTLRQGLILDALGAPRPRYAHCSLILGEDKQKLSKRHGATSCNQFRLDGFLPDAMVNYLALLGWNDGTDNEIFTRDELIEAFDVDRIVKSPSVFDMDKLKWVNSQHLKAMEVEEIQDLVEEQLNFLDMIKEGADDSAKRDFVFATTTLAKQMMETLQDAATNARTVLGYNLPATFGDLEDGGEAKEMIELGNFYNIATRVLEMHDSKSFPTPAADNLLTAFVDGSNKAIVEDNDVGGDETSYPQEYKATMKSMAKDMKVKGKNLFHPVRLALTGEMSGQDVTKQLSLLAMSETDNSAINADSAGVVSFETRMERLRKFCESIPEE 673          
BLAST of NO08G03520 vs. NCBI_GenBank
Match: XP_002295319.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED87385.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 584.3 bits (1505), Expect = 4.100e-163
Identity = 311/523 (59.46%), Postives = 383/523 (73.23%), Query Frame = 0
Query:   77 RVRFAPSPTGTLHVGGARTALYNYLVAR-------QSKDGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGA-VGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKPPQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLNYLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHLRALSDEELVPLVEAQLISAGVAKEGAGEDGKT--FVVHATQVAKGSMELVNDATTIVGDVLTYPLAST---LEAGEAETLVAEG-LWDMAREVVRAYEANEMPTGGEEDFQVLWK-------AWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLLHLA--DKAAVN-----MVGLPARIGELK 572
            R+RFAPSPTG+LHVGGARTALYN+LVA+       + + G FVLR+EDTD ARST+ESE+S+LADL +LGL WDEGPD P A  GPYRQSER  +Y K+A +L+  G AYPCFC+ EEL+E +   EA G PP+YD TWRDADP  V K++  GEPYTVRFKV PG RV IDDAVRGTV WDA+ATVGDFILLRSSG+PVYNFCVAVDDA MGITTVIRAEEHLTNTLRQ LIL+AL  P P+YAHCSLILGED+ KLSKRHGATS +QF+ +GFLPDAM+NYLALLGWNDGT+ E+F R ELI+ F ++R+VKSPSVFDM KL+W+N QHL+ +  E+L+ LV+ QL    + KEG G++ KT  FV+ +T +AK  ME   DA T    VL Y L +T   L   EA+T+V +G  + +A +++  +EA   P     +    +        A +KA+ K+MG KGK LFHP+RLALTG MSG DV +Q+ LL +A  D +AVN     +V   +R+  LK
Sbjct:    1 RMRFAPSPTGSLHVGGARTALYNWLVAKKGLLDYGEERGGGFVLRVEDTDLARSTKESEDSVLADLSWLGLLWDEGPDTPLAKYGPYRQSERSALYSKVANRLIAQGKAYPCFCTTEELDEMKARMEAEGIPPRYDGTWRDADPEVVAKKIADGEPYTVRFKVPPGARVVIDDAVRGTVAWDAEATVGDFILLRSSGVPVYNFCVAVDDATMGITTVIRAEEHLTNTLRQGLILDALGAPRPRYAHCSLILGEDKQKLSKRHGATSCNQFRLDGFLPDAMINYLALLGWNDGTDNEIFTREELIEAFDIDRIVKSPSVFDMDKLKWVNSQHLKKMEVEDLLGLVQEQLEFMEMIKEG-GDEKKTRDFVLASTALAKQMMETTQDAATNAKTVLGYDLPATFDGLSDAEAKTMVEQGNFYGIAVKIIEMHEAGSFPMPDANNMLAAFMDGSNKAIATMKALAKEMGVKGKDLFHPVRLALTGEMSGQDVTKQMSLLAMASEDDSAVNVEKAGVVAFESRVEMLK 522          
BLAST of NO08G03520 vs. NCBI_GenBank
Match: XP_005538846.1 (glutamate--tRNA ligase, chloroplast or mitochondrial [Cyanidioschyzon merolae strain 10D] >BAM82810.1 glutamate--tRNA ligase, chloroplast or mitochondrial [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 572.0 bits (1473), Expect = 2.100e-159
Identity = 300/557 (53.86%), Postives = 387/557 (69.48%), Query Frame = 0
Query:   76 VRVRFAPSPTGTLHVGGARTALYNYLVARQSKDGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEG---PDKP------GAVGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKPPQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLNYLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHLRALSDEELVPL-----VEAQLI---------------SAGVAKEGAGEDGKTFVVHATQVAKGSMELVNDATTIVGDVLTYPLASTLEAGEAETLVAE--GLWDMAREVVRAYEANEMPTG------------------GEEDFQVLWKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLLHLADKAA-VNMVGLPARIGELKEVLSKHPAEKE 583
            VRVRFAPSPTG LHVGGARTAL+N+L AR ++ G F++RIEDTD ARS+R SE ++L DLR+LGLDWDEG   PD+P      G  GPYRQSER  IY+  A +L++SG  YPCFC+EE+LE KR+ AEA  + PQYD T RDADP  ++KR+  G+PYT+RF+V  G RVEI D +RG + WDA+AT+GDFI++RSSG+PVYNFCVAVDDALMGITTVIRAEEHLTNTLRQ LIL+AL Y  P+YAH SLILG DR KLSKRHGATS+DQ+  EGFLP+AM+NYLALLGWNDGTE+E++   ELIK FSL+R+ KS +VFD  KLRW+NG HLR++  E+L  +     ++A +I               +AGVA+  +      F   AT++ +GS+EL  D   ++ D+L YPL  T+E+G+++ L+    G  D+A  V+  Y   E+P G                   E+ F   WKAW+K +G ++G+K K+LFHPIRL +TGRM+GPDVGE +++L LA     V  V L  R+  L+ V+ K   E+E
Sbjct:  195 VRVRFAPSPTGNLHVGGARTALFNWLYAR-NQGGYFIIRIEDTDQARSSRASELAVLRDLRWLGLDWDEGPAYPDEPTTEPYRGERGPYRQSERSAIYEAAAAKLIESGAVYPCFCTEEQLERKRRLAEAEHRAPQYDGTCRDADPALIRKRLQRGDPYTLRFRVPAGTRVEIRDVIRGDIAWDANATIGDFIIVRSSGLPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQALILDALGYDRPQYAHVSLILGADRQKLSKRHGATSIDQYAREGFLPEAMMNYLALLGWNDGTEREIYSVEELIKAFSLDRITKSAAVFDANKLRWMNGLHLRSMPPEKLCGVLIRFWLDANVIQRPAEEIDVDVPTRAAAGVAQSASALRFWVFTSRATELLRGSIELAKDCVPLLQDILEYPLEETIESGDSDELLTPQGGFLDIATAVLERYRKGEIPFGDEIEPDPEMMVPNAPSLTSEDPFIEDWKAWVKGIGTQLGRKSKRLFHPIRLVMTGRMTGPDVGEIMRILGLAKGVVQVPYVPLSERMRILERVVKKLRTERE 750          
BLAST of NO08G03520 vs. NCBI_GenBank
Match: XP_002184854.1 (glutamyl-trna synthase, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC43590.1 glutamyl-trna synthase, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 557.0 bits (1434), Expect = 7.000e-155
Identity = 289/503 (57.46%), Postives = 362/503 (71.97%), Query Frame = 0
Query:   77 RVRFAPSPTGTLHVGGARTALYNYLVARQSK------DGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAV---GPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKPPQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLNYLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHLRALSDEELVPLVEAQLISAGVAKEGAGEDGKT------FVVHATQVAKGSMELVNDATTIVGDVLTYPLAST---LEAGEAETLVAEG-LWDMAREVVRAYEANEMPTGGEE----DFQVLWKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLLHLADKA 557
            R+RFAPSPTG+LHVGGARTALYN+LVAR+ +      + AFVLR+EDTD ARST+ESE S+LADL +LGL WDEGPD P      GPYRQSER ++Y  +AQ+L+D G AY CFC+ EEL+  +   EA G+ P+YD  WRDA   +V++ +D G+ YTVRFKV    RV IDD VRG V WDA ATVGDFILLRSSG+PVYNFCVAVDDA MGITTV+RAEEHLTNT+RQ L+L+AL  P P+YAHCSLILGED+ KLSKRHGATS DQ++ +GFLPDAM+NYLALLGWNDGT+ E+F R ELI  F L+RVVKSPSVFD+ KL+W+N QHL+  + E+LVPLV+ Q++  G+ K+G   D         F   AT +AK  ME   DA      VL Y L +T   +   EA T++A G  + +A+++V  Y + E P   ++     F   + A +K++ K++G KG+ LFHP+RLALTG MSG DV +Q+ LL LA KA
Sbjct:   70 RMRFAPSPTGSLHVGGARTALYNWLVARKGQAEEPQSNAAFVLRVEDTDLARSTKESENSVLADLEWLGLLWDEGPDMPSETAPYGPYRQSERGEVYYAVAQKLMDDGKAYRCFCTPEELDAMKADQEARGETPRYDGRWRDASVDDVQQALDEGKAYTVRFKVTDNSRVVIDDVVRGMVSWDAQATVGDFILLRSSGVPVYNFCVAVDDACMGITTVVRAEEHLTNTVRQALVLDALGAPRPRYAHCSLILGEDKQKLSKRHGATSCDQYRLDGFLPDAMINYLALLGWNDGTDNEIFARDELIDAFELDRVVKSPSVFDLEKLKWVNAQHLKLRTVEDLVPLVKQQILWQGMFKDGLVSDDSVDLGVIDFTYAATALAKQMMETTKDAALNAKTVLGYGLPATFTDVRDEEARTMIATGNFYALAQKLVAQYRSGEFPQDTQKGPACQFTQDYMAHMKSLAKELGLKGRHLFHPVRLALTGEMSGQDVTKQMSLLALATKA 572          
BLAST of NO08G03520 vs. NCBI_GenBank
Match: GAX20152.1 (glutamyl-tRNA synthetase [Fistulifera solaris])

HSP 1 Score: 551.6 bits (1420), Expect = 3.000e-153
Identity = 296/554 (53.43%), Postives = 372/554 (67.15%), Query Frame = 0
Query:   77 RVRFAPSPTGTLHVGGARTALYNYLVARQSK------DGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGA-VGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKPPQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLNYLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHLRALSDEELVPLVEAQLISAGVAKEGAGEDGK---TFVVHATQVAKGSMELVNDATTIVGDVLTYPLASTLE----AGEAETLVAEG-LWDMAREVVRAYE---------ANEMPTGGEEDFQVL-------------WKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLLHLA-------DKAAVNMVGLPARIGELKEVLSKHPAEKEPVAG 587
            R+RFAPSPTG+LHVGGARTALYN+LVA++ +      + AFVLR+EDTD ARST+ESE S++ADL++LGL WDEGPD  G   GPYRQSER DIY   AQ+LL  G AY CFC+ EELEE +   E+ G+ P+YD  WRDADP  VKK MD G PYTVRFKV    R+ I+D +RGTV WDA+ATVGDFILLRSSG+PVYNFCVAVDDA MGITTV+RAEEHLTNT+RQ L L+AL  P P+YAHCSLILGED+ KLSKRHGATS DQ++ +GFLPDAM+NYLALLGWNDGT+ E+F R ELI  F LNRVVKSPSVFD+ KL+W+NGQHL+ +S  ++ P V+ QL  AG  K  A  + +    F    T +AK  M+   DA T    VL Y L    E      EA+ ++ +G  + +A++++  ++         AN +    +ED Q +             +   +K + K++G KGK LFHP RLALTG MSG DV +Q+ LL LA       D   + +V    R+  L++     P E +  +G
Sbjct:  109 RMRFAPSPTGSLHVGGARTALYNWLVAKKGQMDYPGSNAAFVLRVEDTDVARSTKESEASVIADLKWLGLIWDEGPDMEGTNYGPYRQSERSDIYFAAAQRLLQDGKAYRCFCTPEELEEMKAEQESRGETPRYDGRWRDADPALVKKMMDEGRPYTVRFKVPSNSRIVIEDVIRGTVAWDAEATVGDFILLRSSGVPVYNFCVAVDDAAMGITTVVRAEEHLTNTVRQALALDALNAPRPRYAHCSLILGEDKQKLSKRHGATSCDQYRLDGFLPDAMINYLALLGWNDGTDNEIFTREELIDAFDLNRVVKSPSVFDIEKLKWVNGQHLKMMSVADVCPYVQDQLQWAGFFKADANMESQPVSDFTFACTSLAKTMMDTTKDAATNAKAVLGYGLPLRFEDLADNSEAKEMIKKGNFYVIAQKLLSMHDEGLLVMPDPANLLSAFADEDAQKVDTANGHSCQYTADYMKQMKVLAKELGVKGKNLFHPARLALTGEMSGQDVTKQLSLLELAVQADDVIDMNGIGVVPFAERMERLRKFCESIPTEFQTPSG 662          
BLAST of NO08G03520 vs. NCBI_GenBank
Match: GAX13173.1 (glutamyl-tRNA synthetase [Fistulifera solaris])

HSP 1 Score: 550.1 bits (1416), Expect = 8.600e-153
Identity = 298/554 (53.79%), Postives = 370/554 (66.79%), Query Frame = 0
Query:   77 RVRFAPSPTGTLHVGGARTALYNYLVARQSK------DGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGA-VGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKPPQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLNYLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHLRALSDEELVPLVEAQLISAGVAKEGAGEDGKT---FVVHATQVAKGSMELVNDATTIVGDVLTYPLASTLE--AGEAET----------LVAEGLWDMARE--VVRAYEANEMPTGGEEDFQVL-------------WKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLLHLA-------DKAAVNMVGLPARIGELKEVLSKHPAEKEPVAG 587
            R+RFAPSPTG+LHVGGARTALYN+LVA++ +      + AFVLR+EDTD ARST+ESE S++ADL++LGL WDEGPD  G   GPYRQSER DIY   AQ+LL  G AY CFC+ EELEE +   E+ G+ P+YD  WRDADP  VKK MD G PYTVRFKV    R+ I+D +RGTV WDA+ATVGDFILLRSSG+PVYNFCVAVDDA MGITTV+RAEEHLTNT+RQ L L+AL  P P+YAHCSLILGED+ KLSKRHGATS DQ++ +GFLPDAM+NYLALLGWNDGT+ E+F R ELI  F LNRVVKSPSVFD+ KL+W+NGQHL+ +S  ++ P V+ QL  AG  K  A  + ++   F    T +AK  M+   DA      VL Y L    E  A ++E           ++A+ L  M  E  +V    AN +    +ED Q +             +   +K + K++G KGK LFHP RLALTG MSG DV +Q+ LL LA       D  ++ +V    R+  L++     P E +  +G
Sbjct:  109 RMRFAPSPTGSLHVGGARTALYNWLVAKKGQMDYPGSNAAFVLRVEDTDVARSTKESEASVIADLKWLGLIWDEGPDMEGTNYGPYRQSERSDIYFAAAQRLLQDGKAYRCFCTPEELEEMKAEQESRGETPRYDGRWRDADPALVKKMMDEGRPYTVRFKVPSNSRIVIEDVIRGTVAWDAEATVGDFILLRSSGVPVYNFCVAVDDAAMGITTVVRAEEHLTNTVRQALALDALNAPRPRYAHCSLILGEDKQKLSKRHGATSCDQYRLDGFLPDAMINYLALLGWNDGTDNEIFTREELIDAFDLNRVVKSPSVFDIEKLKWVNGQHLKMMSVTDVCPYVQDQLQWAGFFKADANMESQSVSDFTFACTSLAKTMMDTTKDAAINAKTVLGYGLPPKFEDLADDSEAKEMIKRGNFYVIAQKLLSMQDEGLLVMPDPANLLSAFADEDAQKVDTANGHSCQYTADYMKQMKVLAKELGVKGKNLFHPARLALTGEMSGQDVTKQLSLLELAVQADDVIDLDSIGVVPFGERMERLRKFCESIPTEFQTPSG 662          
The following BLAST results are available for this feature:
BLAST of NO08G03520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26798.15.200e-25983.70Aminoacyl-tRNA synthetase, class I, conserved site... [more]
CBJ28170.11.400e-18264.54Glutamyl-tRNA Synthetase, chloroplast precursor [E... [more]
XP_005718553.14.800e-17258.88Glutamyl-tRNA Synthetase, chloroplast [Chondrus cr... [more]
CEM22119.15.700e-16558.93unnamed protein product [Vitrella brassicaformis C... [more]
EJK50060.13.700e-16457.01hypothetical protein THAOC_31011 [Thalassiosira oc... [more]
XP_002295319.14.100e-16359.46predicted protein, partial [Thalassiosira pseudona... [more]
XP_005538846.12.100e-15953.86glutamate--tRNA ligase, chloroplast or mitochondri... [more]
XP_002184854.17.000e-15557.46glutamyl-trna synthase, partial [Phaeodactylum tri... [more]
GAX20152.13.000e-15353.43glutamyl-tRNA synthetase [Fistulifera solaris][more]
GAX13173.18.600e-15353.79glutamyl-tRNA synthetase [Fistulifera solaris][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008657NSK008657Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03520.1NO08G03520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583042gene_3687Nannochloropsis oceanica (N. oceanica CCMP1779)gene
GTSgene3713Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03520.1NO08G03520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03520 ID=NO08G03520|Name=NO08G03520|organism=Nannochloropsis oceanica|type=gene|length=1761bp
ATGAAGGCTGTCGCATCCGTAACTACTTTGATGACCTTCATGTTTATTTG
TGCCACCTCCAGTGCGGCGGCAAGCGTTGCAGTCGCCAGCAGCAGGAGGG
GCGGTGCAGCCTTCGTGGCCGGGGCCGGGAGTGCCATTACGCGTCCTTTT
CTCAAACAGCGGCTGCTGCAGCAGCATCAAGCGTCAACGAATTTTGCCAG
GCGCATGACTACTTGTATGGCTGCGGTGCGCGTCCGATTTGCGCCCTCGC
CAACCGGCACTCTGCACGTGGGTGGGGCGCGCACGGCGTTGTACAACTAT
CTGGTGGCCCGTCAAAGCAAGGACGGGGCGTTTGTCTTGCGTATTGAAGA
CACGGACACGGCCCGGTCGACTCGCGAGTCCGAGGAGAGCATGTTGGCGG
ATTTGAGATTCTTGGGATTGGACTGGGATGAAGGGCCTGATAAGCCGGGG
GCGGTTGGGCCTTACAGGCAATCAGAACGAATTGATATTTACAAGAAAAT
AGCGCAGCAGTTGCTAGATTCGGGGGATGCGTATCCATGCTTTTGCTCAG
AAGAAGAGTTGGAGGAAAAGAGGAAGGCGGCTGAGGCGGCGGGGAAGCCA
CCGCAATACGATAGGACCTGGCGCGATGCAGACCCGGTGGAGGTGAAGAA
GCGGATGGATGCAGGTGAGCCTTACACAGTTCGATTTAAGGTCGCCCCGG
GGAGGAGGGTAGAGATCGATGATGCTGTGCGAGGGACCGTCGGATGGGAC
GCGGATGCTACGGTGGGTGACTTCATTTTGTTGAGGAGTAGTGGCATGCC
GGTTTATAATTTTTGTGTGGCTGTGGACGATGCCTTGATGGGGATTACGA
CTGTGATTCGCGCCGAGGAGCATCTAACGAATACGTTGAGGCAGTGTTTG
ATTCTGGAGGCGCTGAAGTATCCGCCACCGAAGTATGCACATTGTAGTCT
AATTTTGGGGGAGGATAGGAGTAAGTTGAGTAAGAGGCATGGGGCGACGA
GCGTGGACCAGTTCAAGGCGGAAGGATTTTTGCCGGACGCCATGTTGAAT
TATCTGGCGTTGCTTGGGTGGAACGACGGGACGGAGCAGGAGGTGTTTGA
TCGCTCAGAGTTGATCAAGAAGTTTTCCTTGAACCGCGTGGTCAAGAGTC
CATCCGTGTTTGATATGGCCAAGTTGAGGTGGATAAATGGACAGCACTTG
AGGGCATTGTCCGATGAGGAGCTCGTGCCTCTTGTGGAAGCACAATTGAT
TAGTGCAGGGGTAGCGAAGGAGGGGGCAGGGGAGGACGGGAAAACGTTTG
TGGTGCATGCAACGCAGGTGGCAAAGGGGTCAATGGAGCTTGTGAACGAC
GCAACGACGATCGTGGGGGACGTGCTGACCTACCCGTTGGCTTCGACGTT
GGAGGCTGGGGAGGCCGAGACGCTTGTAGCGGAGGGGTTGTGGGATATGG
CACGAGAGGTAGTGCGTGCGTATGAGGCGAATGAGATGCCTACAGGAGGG
GAGGAGGATTTCCAAGTGTTGTGGAAGGCCTGGATTAAGGCGGTAGGAAA
GAAGATGGGGAAAAAGGGGAAGCAGCTCTTTCACCCGATTCGGTTGGCCT
TGACGGGACGAATGAGCGGTCCGGACGTTGGGGAGCAGGTGAAATTGTTG
CACTTGGCAGACAAAGCGGCTGTAAACATGGTGGGCTTGCCGGCGCGGAT
TGGCGAGCTGAAGGAGGTGTTGAGCAAGCATCCCGCCGAGAAGGAGCCCG
TGGCTGGGTAG
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protein sequence of NO08G03520.1

>NO08G03520.1-protein ID=NO08G03520.1-protein|Name=NO08G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MKAVASVTTLMTFMFICATSSAAASVAVASSRRGGAAFVAGAGSAITRPF
LKQRLLQQHQASTNFARRMTTCMAAVRVRFAPSPTGTLHVGGARTALYNY
LVARQSKDGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPG
AVGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKP
PQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWD
ADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCL
ILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLN
YLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHL
RALSDEELVPLVEAQLISAGVAKEGAGEDGKTFVVHATQVAKGSMELVND
ATTIVGDVLTYPLASTLEAGEAETLVAEGLWDMAREVVRAYEANEMPTGG
EEDFQVLWKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLL
HLADKAAVNMVGLPARIGELKEVLSKHPAEKEPVAG*
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Synonyms
Publications