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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:981416..983176 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03520.1 vs.
Match: EWM26798.1 (Aminoacyl-tRNA synthetase, class I, conserved site [Nannochloropsis gaditana]) HSP 1 Score: 908.3 bits (2346), Expect = 1.200e-260 Identity = 467/594 (78.62%), Postives = 508/594 (85.52%), Query Frame = 0
Query: 1 MKAVASVTTLMTFMFICATSSAAASVAVASSRRGGAAFVAGAGSAIT---RPFLKQRLLQQHQASTN----FARRMTTCMAAVRVRFAPSPTGTLHVGGARTALYNYLVARQSKDGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKPPQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLNYLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHLRALSDEELVPLVEAQLISAGVAKEGAGEDGKTFVVHATQVAKGSMELVNDATTIVGDVLTYPLASTLEAGEAETLVAEGLWDMAREVVRAYEANEMPTGGEEDFQVLWKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLLHLADKAAVNMVGLPARIGELKEVLSKHPAE-KEPVAG 587
MK +A +T +T + C + A AS+ A+ RR A G T KQ L Q Q ++ FARRM+T MAAVRVRFAPSPTGTLHVGGARTALYNYLVARQ KDG FVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERID+YKK+AQQLL+SGDAYPCFC+EEELE KR+AAEAAGKPPQYDRTWRDADP VK++++AGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYP PKYAHCSLILGEDRSKLSKRHGATSVDQF+A+GFLPDAMLNYLALLGWNDGTEQEVF R ELI +FSLNRVVKSPSVFDMAKLRW+NGQHLRAL DE LVPLV A L G+ K GA +G FV +ATQVAKGSMELVNDA TIVGDVLTYPL TL +GEA+ LVAEGLW+MAREVV A+EANEMP G EEDF LWKAW+KAVGKKMG+KGKQLFHPIRLALTGRMSGPDVGEQ+++LHLA+ A ++V LP RI +L+E+L K P E KEPVAG
Sbjct: 1 MKVIAFMTLTVTGLISCCSGRALASITYAAGRRQNIAGFLGRARISTFRSPTSTKQPLQQIDQPKSSPDALFARRMSTLMAAVRVRFAPSPTGTLHVGGARTALYNYLVARQHKDGVFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPGAVGPYRQSERIDVYKKVAQQLLESGDAYPCFCTEEELEAKRQAAEAAGKPPQYDRTWRDADPALVKEKIEAGEPYTVRFKVAPGRRVEIDDAVRGTVGWDADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCLILEALKYPAPKYAHCSLILGEDRSKLSKRHGATSVDQFRAQGFLPDAMLNYLALLGWNDGTEQEVFSRQELIDRFSLNRVVKSPSVFDMAKLRWVNGQHLRALPDENLVPLVGACLEEEGMVKVGA--EGAAFVSYATQVAKGSMELVNDAATIVGDVLTYPLEETLASGEADALVAEGLWEMAREVVSAFEANEMPRGKEEDFAALWKAWVKAVGKKMGRKGKQLFHPIRLALTGRMSGPDVGEQIRMLHLAETGATSVVDLPTRIEKLREILRKAPVEAKEPVAG 592
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03520.1 ID=NO08G03520.1|Name=NO08G03520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp
ATGAAGGCTGTCGCATCCGTAACTACTTTGATGACCTTCATGTTTATTTG
TGCCACCTCCAGTGCGGCGGCAAGCGTTGCAGTCGCCAGCAGCAGGAGGG
GCGGTGCAGCCTTCGTGGCCGGGGCCGGGAGTGCCATTACGCGTCCTTTT
CTCAAACAGCGGCTGCTGCAGCAGCATCAAGCGTCAACGAATTTTGCCAG
GCGCATGACTACTTGTATGGCTGCGGTGCGCGTCCGATTTGCGCCCTCGC
CAACCGGCACTCTGCACGTGGGTGGGGCGCGCACGGCGTTGTACAACTAT
CTGGTGGCCCGTCAAAGCAAGGACGGGGCGTTTGTCTTGCGTATTGAAGA
CACGGACACGGCCCGGTCGACTCGCGAGTCCGAGGAGAGCATGTTGGCGG
ATTTGAGATTCTTGGGATTGGACTGGGATGAAGGGCCTGATAAGCCGGGG
GCGGTTGGGCCTTACAGGCAATCAGAACGAATTGATATTTACAAGAAAAT
AGCGCAGCAGTTGCTAGATTCGGGGGATGCGTATCCATGCTTTTGCTCAG
AAGAAGAGTTGGAGGAAAAGAGGAAGGCGGCTGAGGCGGCGGGGAAGCCA
CCGCAATACGATAGGACCTGGCGCGATGCAGACCCGGTGGAGGTGAAGAA
GCGGATGGATGCAGGTGAGCCTTACACAGTTCGATTTAAGGTCGCCCCGG
GGAGGAGGGTAGAGATCGATGATGCTGTGCGAGGGACCGTCGGATGGGAC
GCGGATGCTACGGTGGGTGACTTCATTTTGTTGAGGAGTAGTGGCATGCC
GGTTTATAATTTTTGTGTGGCTGTGGACGATGCCTTGATGGGGATTACGA
CTGTGATTCGCGCCGAGGAGCATCTAACGAATACGTTGAGGCAGTGTTTG
ATTCTGGAGGCGCTGAAGTATCCGCCACCGAAGTATGCACATTGTAGTCT
AATTTTGGGGGAGGATAGGAGTAAGTTGAGTAAGAGGCATGGGGCGACGA
GCGTGGACCAGTTCAAGGCGGAAGGATTTTTGCCGGACGCCATGTTGAAT
TATCTGGCGTTGCTTGGGTGGAACGACGGGACGGAGCAGGAGGTGTTTGA
TCGCTCAGAGTTGATCAAGAAGTTTTCCTTGAACCGCGTGGTCAAGAGTC
CATCCGTGTTTGATATGGCCAAGTTGAGGTGGATAAATGGACAGCACTTG
AGGGCATTGTCCGATGAGGAGCTCGTGCCTCTTGTGGAAGCACAATTGAT
TAGTGCAGGGGTAGCGAAGGAGGGGGCAGGGGAGGACGGGAAAACGTTTG
TGGTGCATGCAACGCAGGTGGCAAAGGGGTCAATGGAGCTTGTGAACGAC
GCAACGACGATCGTGGGGGACGTGCTGACCTACCCGTTGGCTTCGACGTT
GGAGGCTGGGGAGGCCGAGACGCTTGTAGCGGAGGGGTTGTGGGATATGG
CACGAGAGGTAGTGCGTGCGTATGAGGCGAATGAGATGCCTACAGGAGGG
GAGGAGGATTTCCAAGTGTTGTGGAAGGCCTGGATTAAGGCGGTAGGAAA
GAAGATGGGGAAAAAGGGGAAGCAGCTCTTTCACCCGATTCGGTTGGCCT
TGACGGGACGAATGAGCGGTCCGGACGTTGGGGAGCAGGTGAAATTGTTG
CACTTGGCAGACAAAGCGGCTGTAAACATGGTGGGCTTGCCGGCGCGGAT
TGGCGAGCTGAAGGAGGTGTTGAGCAAGCATCCCGCCGAGAAGGAGCCCG
TGGCTGGGTAG back to topprotein sequence of NO08G03520.1 >NO08G03520.1-protein ID=NO08G03520.1-protein|Name=NO08G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MKAVASVTTLMTFMFICATSSAAASVAVASSRRGGAAFVAGAGSAITRPF
LKQRLLQQHQASTNFARRMTTCMAAVRVRFAPSPTGTLHVGGARTALYNY
LVARQSKDGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPG
AVGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKP
PQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWD
ADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCL
ILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLN
YLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWINGQHL
RALSDEELVPLVEAQLISAGVAKEGAGEDGKTFVVHATQVAKGSMELVND
ATTIVGDVLTYPLASTLEAGEAETLVAEGLWDMAREVVRAYEANEMPTGG
EEDFQVLWKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLL
HLADKAAVNMVGLPARIGELKEVLSKHPAEKEPVAG* back to topmRNA from alignment at chr8:981416..983176- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03520.1 ID=NO08G03520.1|Name=NO08G03520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at chr8:981416..983176- (Nannochloropsis oceanica)
ATGAAGGCTGTCGCATCCGTAACTACTTTGATGACCTTCATGTTTATTTG
TGCCACCTCCAGTGCGGCGGCAAGCGTTGCAGTCGCCAGCAGCAGGAGGG
GCGGTGCAGCCTTCGTGGCCGGGGCCGGGAGTGCCATTACGCGTCCTTTT
CTCAAACAGCGGCTGCTGCAGCAGCATCAAGCGTCAACGAATTTTGCCAG
GCGCATGACTACTTGTATGGCTGCGGTGCGCGTCCGATTTGCGCCCTCGC
CAACCGGCACTCTGCACGTGGGTGGGGCGCGCACGGCGTTGTACAACTAT
CTGGTGGCCCGTCAAAGCAAGGACGGGGCGTTTGTCTTGCGTATTGAAGA
CACGGACACGGCCCGGTCGACTCGCGAGTCCGAGGAGAGCATGTTGGCGG
ATTTGAGATTCTTGGGATTGGACTGGGATGAAGGGCCTGATAAGCCGGGG
GCGGTTGGGCCTTACAGGCAATCAGAACGAATTGATATTTACAAGAAAAT
AGCGCAGCAGTTGCTAGATTCGGGGGATGCGTATCCATGCTTTTGCTCAG
AAGAAGAGTTGGAGGAAAAGAGGAAGGCGGCTGAGGCGGCGGGGAAGCCA
CCGCAATACGATAGGACCTGGCGCGATGCAGACCCGGTGGAGGTGAAGAA
GCGGATGGATGCAGGTGAGCCTTACACAGTTCGATTTAAGGTCGCCCCGG
GGAGGAGGGTAGAGATCGATGATGCTGTGCGAGGGACCGTCGGATGGGAC
GCGGATGCTACGGTGGGTGACTTCATTTTGTTGAGGAGTAGTGGCATGCC
GGTTTATAATTTTTGTGTGGCTGTGGACGATGCCTTGATGGGGATTACGA
CTGTGATTCGCGCCGAGGAGCATCTAACGAATACGTTGAGGCAGTGTTTG
ATTCTGGAGGCGCTGAAGTATCCGCCACCGAAGTATGCACATTGTAGTCT
AATTTTGGGGGAGGATAGGAGTAAGTTGAGTAAGAGGCATGGGGCGACGA
GCGTGGACCAGTTCAAGGCGGAAGGATTTTTGCCGGACGCCATGTTGAAT
TATCTGGCGTTGCTTGGGTGGAACGACGGGACGGAGCAGGAGGTGTTTGA
TCGCTCAGAGTTGATCAAGAAGTTTTCCTTGAACCGCGTGGTCAAGAGTC
CATCCGTGTTTGATATGGCCAAGTTGAGGTGGATAAATGGACAGCACTTG
AGGGCATTGTCCGATGAGGAGCTCGTGCCTCTTGTGGAAGCACAATTGAT
TAGTGCAGGGGTAGCGAAGGAGGGGGCAGGGGAGGACGGGAAAACGTTTG
TGGTGCATGCAACGCAGGTGGCAAAGGGGTCAATGGAGCTTGTGAACGAC
GCAACGACGATCGTGGGGGACGTGCTGACCTACCCGTTGGCTTCGACGTT
GGAGGCTGGGGAGGCCGAGACGCTTGTAGCGGAGGGGTTGTGGGATATGG
CACGAGAGGTAGTGCGTGCGTATGAGGCGAATGAGATGCCTACAGGAGGG
GAGGAGGATTTCCAAGTGTTGTGGAAGGCCTGGATTAAGGCGGTAGGAAA
GAAGATGGGGAAAAAGGGGAAGCAGCTCTTTCACCCGATTCGGTTGGCCT
TGACGGGACGAATGAGCGGTCCGGACGTTGGGGAGCAGGTGAAATTGTTG
CACTTGGCAGACAAAGCGGCTGTAAACATGGTGGGCTTGCCGGCGCGGAT
TGGCGAGCTGAAGGAGGTGTTGAGCAAGCATCCCGCCGAGAAGGAGCCCG
TGGCTGGGTAG back to topCoding sequence (CDS) from alignment at chr8:981416..983176- >NO08G03520.1 ID=NO08G03520.1|Name=NO08G03520.1|organism=Nannochloropsis oceanica|type=CDS|length=1761bp|location=Sequence derived from alignment at chr8:981416..983176- (Nannochloropsis oceanica)
ATGAAGGCTGTCGCATCCGTAACTACTTTGATGACCTTCATGTTTATTTG
TGCCACCTCCAGTGCGGCGGCAAGCGTTGCAGTCGCCAGCAGCAGGAGGG
GCGGTGCAGCCTTCGTGGCCGGGGCCGGGAGTGCCATTACGCGTCCTTTT
CTCAAACAGCGGCTGCTGCAGCAGCATCAAGCGTCAACGAATTTTGCCAG
GCGCATGACTACTTGTATGGCTGCGGTGCGCGTCCGATTTGCGCCCTCGC
CAACCGGCACTCTGCACGTGGGTGGGGCGCGCACGGCGTTGTACAACTAT
CTGGTGGCCCGTCAAAGCAAGGACGGGGCGTTTGTCTTGCGTATTGAAGA
CACGGACACGGCCCGGTCGACTCGCGAGTCCGAGGAGAGCATGTTGGCGG
ATTTGAGATTCTTGGGATTGGACTGGGATGAAGGGCCTGATAAGCCGGGG
GCGGTTGGGCCTTACAGGCAATCAGAACGAATTGATATTTACAAGAAAAT
AGCGCAGCAGTTGCTAGATTCGGGGGATGCGTATCCATGCTTTTGCTCAG
AAGAAGAGTTGGAGGAAAAGAGGAAGGCGGCTGAGGCGGCGGGGAAGCCA
CCGCAATACGATAGGACCTGGCGCGATGCAGACCCGGTGGAGGTGAAGAA
GCGGATGGATGCAGGTGAGCCTTACACAGTTCGATTTAAGGTCGCCCCGG
GGAGGAGGGTAGAGATCGATGATGCTGTGCGAGGGACCGTCGGATGGGAC
GCGGATGCTACGGTGGGTGACTTCATTTTGTTGAGGAGTAGTGGCATGCC
GGTTTATAATTTTTGTGTGGCTGTGGACGATGCCTTGATGGGGATTACGA
CTGTGATTCGCGCCGAGGAGCATCTAACGAATACGTTGAGGCAGTGTTTG
ATTCTGGAGGCGCTGAAGTATCCGCCACCGAAGTATGCACATTGTAGTCT
AATTTTGGGGGAGGATAGGAGTAAGTTGAGTAAGAGGCATGGGGCGACGA
GCGTGGACCAGTTCAAGGCGGAAGGATTTTTGCCGGACGCCATGTTGAAT
TATCTGGCGTTGCTTGGGTGGAACGACGGGACGGAGCAGGAGGTGTTTGA
TCGCTCAGAGTTGATCAAGAAGTTTTCCTTGAACCGCGTGGTCAAGAGTC
CATCCGTGTTTGATATGGCCAAGTTGAGGTGGATAAATGGACAGCACTTG
AGGGCATTGTCCGATGAGGAGCTCGTGCCTCTTGTGGAAGCACAATTGAT
TAGTGCAGGGGTAGCGAAGGAGGGGGCAGGGGAGGACGGGAAAACGTTTG
TGGTGCATGCAACGCAGGTGGCAAAGGGGTCAATGGAGCTTGTGAACGAC
GCAACGACGATCGTGGGGGACGTGCTGACCTACCCGTTGGCTTCGACGTT
GGAGGCTGGGGAGGCCGAGACGCTTGTAGCGGAGGGGTTGTGGGATATGG
CACGAGAGGTAGTGCGTGCGTATGAGGCGAATGAGATGCCTACAGGAGGG
GAGGAGGATTTCCAAGTGTTGTGGAAGGCCTGGATTAAGGCGGTAGGAAA
GAAGATGGGGAAAAAGGGGAAGCAGCTCTTTCACCCGATTCGGTTGGCCT
TGACGGGACGAATGAGCGGTCCGGACGTTGGGGAGCAGGTGAAATTGTTG
CACTTGGCAGACAAAGCGGCTGTAAACATGGTGGGCTTGCCGGCGCGGAT
TGGCGAGCTGAAGGAGGTGTTGAGCAAGCATCCCGCCGAGAAGGAGCCCG
TGGCTGGGTAG back to top
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