NO08G02170, NO08G02170 (gene) Nannochloropsis oceanica

Overview
NameNO08G02170
Unique NameNO08G02170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3526
Alignment locationchr8:638617..642142 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:638617..642142 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G02170 vs. NCBI_GenBank
Match: EWM26645.1 (hypothetical protein Naga_100001g123 [Nannochloropsis gaditana])

HSP 1 Score: 373.2 bits (957), Expect = 1.000e-99
Identity = 203/379 (53.56%), Postives = 265/379 (69.92%), Query Frame = 0 
Query:   15 LLHAG-VGTARGSGAXXXXVYGGTSTDGGG--PDLASTVCHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILFAALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSRINYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFEHWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTDTLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGISSRSSTLFDISSXXXXXXXXVDASLCIQLDGRLCLQNCSVNNTVIRGGGMYGLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAAT 391
            L+++G   TA G G      YGG ST+  G  PDLAST  HQSSIFH+M KGS++G   R  +EI+R TRRH+ YLAFFLF T  F+L A LSR GW LGRII+TS++MP  V CPP + E  P+A+C+AS++VIF++RINYGLFGDLKY T+SE S+ T+A+  GG +R    ++  +VSS+IQ S++ WA NFPEY DY+ +T++ +VVS L+T   LI L +I++  PA   A+ DTL+ GFYAL LS +CL + + AWMGVPLSAFTTEC P SALP +NGTG++       D SS           ++C+QLDG LC +NCS  ++V RGGGMYG+ VFSCLLQCVCL+FWA+ QEE+    DQ+   R+S  T
Sbjct:   13 LIYSGNADTASGRGR-----YGGVSTEDNGNPPDLASTFYHQSSIFHTMRKGSIVG-HHRNLTEIMRGTRRHRLYLAFFLFATSAFVLVAMLSRGGWTLGRIITTSVMMPRVVTCPPALAEWEPNAECKASKIVIFSTRINYGLFGDLKYLTSSETSVHTQAEAAGGESRGLKTREKAIVSSNIQSSYDTWAANFPEYMDYIHTTESCLVVSFLSTALCLILLGVISLGLPASGQAKLDTLSAGFYALALSALCLFVGMLAWMGVPLSAFTTECHP-SALPGVNGTGLN-----WADTSS------DFYGGAMCVQLDGGLCSENCSTTSSVNRGGGMYGIAVFSCLLQCVCLVFWAKLQEELSSADDQSRGGRTSFGT 373
The following BLAST results are available for this feature:
BLAST of NO08G02170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26645.11.000e-9953.56hypothetical protein Naga_100001g123 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008819NSK008819Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02170.3NO08G02170.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G02170.2NO08G02170.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G02170.1NO08G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582543gene_3545Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g123gene3844Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02170.3NO08G02170.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G02170.2NO08G02170.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G02170.1NO08G02170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02170 ID=NO08G02170|Name=NO08G02170|organism=Nannochloropsis oceanica|type=gene|length=3526bp
ATAGCGCTAGTGAGTCCTCTTTGTCAATCTTCAGTACATGCAGTCCACGG
CATGGTAAGCCACAGCACACACGGCATTCTAGACTCTGACCGAGGTGTAT
GCCCCTTGCTCTGACTGGGCGGTGAGGCTGTCGGCATCATTATTGGCGAG
CCTCTCCGAAGAGTCCAAACCTCGTTTTTCAACTGGTCGATTTTGCGAAT
GTCAAAGTGAGGGAGGAATGGCTGAATGCAAGCCCTGGTGTGCTGCTCTA
CTCTCGGCTCCCACTGCTCCGCACACTTGCTTACCCTACAGGTGTTTTGC
GAGACGCCCCTCGTGTCCGATCGCGTTTTTTGTATTTCCGCTTTACAAGC
GACAACAGTGTATCGGCTCCCGTGGCACACAGTATTGGTTTGCCGACCAC
AACTCCAATCAGCATCACTAGCGCAAGGTCAAGgtagggatgtctgatag
aagagcattgtgtcaaaaactttagctagaagcccgtcaagatctaaaat
attttcgtctcacccctcaactagTCCATCATCGTACCTGACACACTATT
TCGGAATAGTATTAGCAGCAGAACAGGCGTTTAGAGCATGAGTTGTCACC
CGGGGAATGGAGCAGGCGAGCTAGTGCCCCTGCTACATGCGGGGGTTGGC
ACGGCGAGAGGAAGCGGGGCCGGTGGTGGCGGGGTCTATGGGGGAACGTC
AACCGACGGCGGCGGGCCAGATTTGGCATCGACAGTATGCCATCAAAGTT
CGATTTTTCATTCGATGGGCAAAGGCTCCTTAATGgtgagggttggaaag
attgaggagtaggaattaaagtggatgtgaatctgcaatgttataaattt
aatacgcctccgtcatcatctaaaccatatatgcagGGCAAACGAAAACG
CGGGACCTCAGAGATCCTTCGACAGACGCGTCGTCATCAAACTTATTgta
agtgctaggaagtaaggatatgaggaagatttcaaggtgctctttttctc
ttgacgtgtctgtctgcttgggagcgttcgaagggttcaatatacgaaga
ctactgacggatgccactgactttttttttacaatatcttctcgccgctt
tcagTGGCTTTCTTTTTGTTTACGACTCTGGGCTTCATCCTTTTTGCCGC
ACTCTCGAGAAGCGGGTGGGCTTTAGGTCGCATCATCAGCACCTCTATTC
TTATGCCTGAGAAGGTGCCTTGCCCGCCAAAGATGACTGAACTGGGCCCC
GATGCCAAGTGCGAAGCTTCCGAGCTTGTCATTTTCACAAGTCGGATAAA
TTACGgtacgagcgcactgattcatgcccgtatatgttttactgatatat
tgttcttaaacataaaaaagaaactcacgtacacatttttctctcccgcc
ctccctcttaacccccacagGATTGTTCGGTGACCTGAAATATGAAACAA
CCTCCGAAGTCTCCATTGACACCCGAGCAAAGACCCCGGGTGGGATGACC
CGGACGTGGCTGGAAAAGAAGAACACCCTCGTTTCTAGCGACATCCAACC
CTCCTTCGAGCACTGgtacgtgttttgcgtcaatttttgtctttgtgttg
aggtgtgtttacatatgttcaaacggaggcccatcgctcgattcttttct
tcagggttggcggctaggcagtgcagaaacctgaaagtatactgatacta
aaaccgcagttacgtgcacctataaacttcaccatccccaaaatacacgt
actcatgcagGGCCAATAATTTCCCCGAATATTATGACTATGTTCGCTCA
ACTCAAGCCTTTGTCGTTGTCAGCGTCCTTGCTACCGTGACAAGCTTGAT
CTTTCTCAGCTTGATTACCATAGCGCGTCCCGCCCCTATTTGGgtgagta
ttatgtagggttagggaagtagggggagaggggggaagcacttatttgtc
tctcttttttttgcatgtcacttatccagtgacccgaaattcgaaacatt
ccttcaatcatcaatcaaataaatagGCACGCACAGACACCTTGACTACG
GGTTTTTACGCCCTCCTGCTCTCGACCATCTGCCTTGCCCTTAGCATATT
TGCCTGGATGgtaagtatatctcttttcccttgcttccgctttagctgga
ctcacctctgacacaatcattgactctatatcgttgtgtgtaaacagGGC
GTCCCACTTTCCGCCTTTACGACGGAGTGCGGCCCGTCGTCAGCTTTGCC
ATCTCTCAACGGGACCGGTATCAGCAGCAGAAGCTCCACGCTCTTTGATA
TCAGCAGCAGCAGCAGCAGCAATAGCAGCAACGTCGACGCCTCCCTTTGC
ATCCAACTCGACGGGAGACTGTGCCTGCAGAACTGCTCGGTCAACAACAC
TGTCATCCGCGGGGGAGGGATGTATGGCCTGGTCGTCTTCTCCTGCCTCC
TCCAATGTGTTTGCCTCATGTTTTGGGCCGAATTCCAAGAAGAGGTATTG
CGTGGGTATGACCAGACCCCCAGCAGAAGGAGCAGTGCCGCGACGCCTCC
CGTCATTGAAACGGGCCCGATACTGCCGACGATGATAGTGTCCTAATGTG
TCTCCAAGCACGTACGGTGTTTCATTAATTTTCCTCTTTTTTTTTGAAGT
CTGTCAGCAGGGGGAGAGCTGGGTGTCATTAGATAAGGGATGCCCCTCTT
AAAAGCGGGATTTAAGCATGCCACTGCTTTTCGTTTCAGTTTCCTATCGA
GCTTGACTGAGGATCCATAGAAGGTCGGGGATCTGAGTATTGTGAGTCTG
GTGAGTGTGTCAGCAGGTGAGTCGGCGATGGTTGGCGACGCCATAGTAAT
ATATTAAATTGCAGGAGCCACCAGGCATTGAGTCGAGGTCCACAACAAGC
GATAGGGGGTAAGGGGGATCCATGTCCATGGGGGGTAAGGGGGATCCTGG
GTGATGACTTGGGGTTCGATTGTTTTGATTCGAAGTGCACAATCGCCGAT
CTTTTCGGTGAAAGCGAAGGGGGAAAATCGATTTGATGGATTTGAGCACG
GACCATTCCGTCAGATCGTGCTGATCACAACGATTCCATTCTGAGGTTTC
ATGGAGGGTCAGGGGGACCAGGGGGTTCACCACCTTTCGTCCTTCGACGG
TGATGGCAGGACATCATCCCCACTGGACATATTCAAAAAGACAAAACCCA
CGGACACAAAGTTCGAGGGGACCAGCCGCGCCGCGGCCTCAATATCAGTA
TCATATGTGACTTATACACCCAGAATAATCGCCAAAGAGTCAAGGAAGAA
CGAAGATATTAAAATGCTTGCAAATTTTTGATAGTCCCCGAGAAAAGCGA
CGGGGAAAGGATGCACCTGCTTTTGTGATATCCCGAAAGAGAAATTTTGC
ATGGGATACAACAATAATACGAGTGTTCTCTGGGCAGTCAATATCGAAAT
AAATAAATAAATTCCTAAACTGCAATTAAGCAGGGACCGCCCGCTCGCGA
AGTGAAGTAGAAATTAAGAAGCGTCG
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protein sequence of NO08G02170.3

>NO08G02170.3-protein ID=NO08G02170.3-protein|Name=NO08G02170.3|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MSCHPGNGAGELVPLLHAGVGTARGSGAGGGGVYGGTSTDGGGPDLASTV
CHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILF
AALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSR
INYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFE
HWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTD
TLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGIS
SRSSTLFDISSSSSSNSSNVDASLCIQLDGRLCLQNCSVNNTVIRGGGMY
GLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAATPPVIETGPIL
PTMIVS*
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protein sequence of NO08G02170.2

>NO08G02170.2-protein ID=NO08G02170.2-protein|Name=NO08G02170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MSCHPGNGAGELVPLLHAGVGTARGSGAGGGGVYGGTSTDGGGPDLASTV
CHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILF
AALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSR
INYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFE
HWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTD
TLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGIS
SRSSTLFDISSSSSSNSSNVDASLCIQLDGRLCLQNCSVNNTVIRGGGMY
GLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAATPPVIETGPIL
PTMIVS*
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protein sequence of NO08G02170.1

>NO08G02170.1-protein ID=NO08G02170.1-protein|Name=NO08G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MSCHPGNGAGELVPLLHAGVGTARGSGAGGGGVYGGTSTDGGGPDLASTV
CHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILF
AALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSR
INYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFE
HWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTD
TLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGIS
SRSSTLFDISSSSSSNSSNVDASLCIQLDGRLCLQNCSVNNTVIRGGGMY
GLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAATPPVIETGPIL
PTMIVS*
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Synonyms
Publications