NO08G02170.3, NO08G02170.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G02170.3
Unique Name	NO08G02170.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2738
Alignment location	chr8:638617..642142 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:638617..642142 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G02170.3 vs.
Match: EWM26645.1 (hypothetical protein Naga_100001g123 [Nannochloropsis gaditana])

HSP 1 Score: 372.1 bits (954), Expect = 2.200e-99
Identity = 198/365 (54.25%), Postives = 260/365 (71.23%), Query Frame = 0

Query:   28 AGGGGVYGGTSTDGGG--PDLASTVCHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILFAALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSRINYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFEHWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTDTLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGISSRSSTLFDISSSSSSNSSNVDASLCIQLDGRLCLQNCSVNNTVIRGGGMYGLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAAT 391
            A G G YGG ST+  G  PDLAST  HQSSIFH+M KGS++G   R  +EI+R TRRH+ YLAFFLF T  F+L A LSR GW LGRII+TS++MP  V CPP + E  P+A+C+AS++VIF++RINYGLFGDLKY T+SE S+ T+A+  GG +R    ++  +VSS+IQ S++ WA NFPEY DY+ +T++ +VVS L+T   LI L +I++  PA   A+ DTL+ GFYAL LS +CL + + AWMGVPLSAFTTEC P SALP +NGTG+           + + ++S     ++C+QLDG LC +NCS  ++V RGGGMYG+ VFSCLLQCVCL+FWA+ QEE+    DQ+   R+S  T
Sbjct:   22 ASGRGRYGGVSTEDNGNPPDLASTFYHQSSIFHTMRKGSIVGHH-RNLTEIMRGTRRHRLYLAFFLFATSAFVLVAMLSRGGWTLGRIITTSVMMPRVVTCPPALAEWEPNAECKASKIVIFSTRINYGLFGDLKYLTSSETSVHTQAEAAGGESRGLKTREKAIVSSNIQSSYDTWAANFPEYMDYIHTTESCLVVSFLSTALCLILLGVISLGLPASGQAKLDTLSAGFYALALSALCLFVGMLAWMGVPLSAFTTECHP-SALPGVNGTGL-----------NWADTSSDFYGGAMCVQLDGGLCSENCSTTSSVNRGGGMYGIAVFSCLLQCVCLVFWAKLQEELSSADDQSRGGRTSFGT 373

The following BLAST results are available for this feature:

BLAST of NO08G02170.3 vs.

BLAST of NO08G02170.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26645.1	2.200e-99	54.25	hypothetical protein Naga_100001g123 [Nannochlorop...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G02170	NO08G02170	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G02170.3	NO08G02170.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G02170.3.cds1	NO08G02170.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02170.3.cds2	NO08G02170.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02170.3.cds3	NO08G02170.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02170.3.cds4	NO08G02170.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02170.3.cds5	NO08G02170.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02170.3.cds6	NO08G02170.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02170.3.cds7	NO08G02170.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:638617..642142-
coding sequence from alignment at chr8:638617..642142-

mRNA sequence

>NO08G02170.3 ID=NO08G02170.3|Name=NO08G02170.3|organism=Nannochloropsis oceanica|type=mRNA|length=2738bp
ATAGCGCTAGTGAGTCCTCTTTGTCAATCTTCAGTACATGCAGTCCACGG
CATGGTAAGCCACAGCACACACGGCATTCTAGACTCTGACCGAGGTGTAT
GCCCCTTGCTCTGACTGGGCGGTGAGGCTGTCGGCATCATTATTGGCGAG
CCTCTCCGAAGAGTCCAAACCTCGTTTTTCAACTGGTCGATTTTGCGAAT
GTCAAAGTGAGGGAGGAATGGCTGAATGCAAGCCCTGGTGTGCTGCTCTA
CTCTCGGCTCCCACTGCTCCGCACACTTGCTTACCCTACAGGTGTTTTGC
GAGACGCCCCTCGTGTCCGATCGCGTTTTTTGTATTTCCGCTTTACAAGC
GACAACAGTGTATCGGCTCCCGTGGCACACAGTATTGGTTTGCCGACCAC
AACTCCAATCAGCATCACTAGCGCAAGGTCAAGGTAGGGATGTCTGATAG
AAGAGCATTGTGTCAAAAACTTTAGCTAGAAGCCCGTCAAGATCTAAAAT
ATTTTCGTCTCACCCCTCAACTAGTCCATCATCGTACCTGACACACTATT
TCGGAATAGTATTAGCAGCAGAACAGGCGTTTAGAGCATGAGTTGTCACC
CGGGGAATGGAGCAGGCGAGCTAGTGCCCCTGCTACATGCGGGGGTTGGC
ACGGCGAGAGGAAGCGGGGCCGGTGGTGGCGGGGTCTATGGGGGAACGTC
AACCGACGGCGGCGGGCCAGATTTGGCATCGACAGTATGCCATCAAAGTT
CGATTTTTCATTCGATGGGCAAAGGCTCCTTAATGGGCAAACGAAAACGC
GGGACCTCAGAGATCCTTCGACAGACGCGTCGTCATCAAACTTATTTGGC
TTTCTTTTTGTTTACGACTCTGGGCTTCATCCTTTTTGCCGCACTCTCGA
GAAGCGGGTGGGCTTTAGGTCGCATCATCAGCACCTCTATTCTTATGCCT
GAGAAGGTGCCTTGCCCGCCAAAGATGACTGAACTGGGCCCCGATGCCAA
GTGCGAAGCTTCCGAGCTTGTCATTTTCACAAGTCGGATAAATTACGGAT
TGTTCGGTGACCTGAAATATGAAACAACCTCCGAAGTCTCCATTGACACC
CGAGCAAAGACCCCGGGTGGGATGACCCGGACGTGGCTGGAAAAGAAGAA
CACCCTCGTTTCTAGCGACATCCAACCCTCCTTCGAGCACTGGGCCAATA
ATTTCCCCGAATATTATGACTATGTTCGCTCAACTCAAGCCTTTGTCGTT
GTCAGCGTCCTTGCTACCGTGACAAGCTTGATCTTTCTCAGCTTGATTAC
CATAGCGCGTCCCGCCCCTATTTGGGCACGCACAGACACCTTGACTACGG
GTTTTTACGCCCTCCTGCTCTCGACCATCTGCCTTGCCCTTAGCATATTT
GCCTGGATGGGCGTCCCACTTTCCGCCTTTACGACGGAGTGCGGCCCGTC
GTCAGCTTTGCCATCTCTCAACGGGACCGGTATCAGCAGCAGAAGCTCCA
CGCTCTTTGATATCAGCAGCAGCAGCAGCAGCAATAGCAGCAACGTCGAC
GCCTCCCTTTGCATCCAACTCGACGGGAGACTGTGCCTGCAGAACTGCTC
GGTCAACAACACTGTCATCCGCGGGGGAGGGATGTATGGCCTGGTCGTCT
TCTCCTGCCTCCTCCAATGTGTTTGCCTCATGTTTTGGGCCGAATTCCAA
GAAGAGGTATTGCGTGGGTATGACCAGACCCCCAGCAGAAGGAGCAGTGC
CGCGACGCCTCCCGTCATTGAAACGGGCCCGATACTGCCGACGATGATAG
TGTCCTAATGTGTCTCCAAGCACGTACGGTGTTTCATTAATTTTCCTCTT
TTTTTTTGAAGTCTGTCAGCAGGGGGAGAGCTGGGTGTCATTAGATAAGG
GATGCCCCTCTTAAAAGCGGGATTTAAGCATGCCACTGCTTTTCGTTTCA
GTTTCCTATCGAGCTTGACTGAGGATCCATAGAAGGTCGGGGATCTGAGT
ATTGTGAGTCTGGTGAGTGTGTCAGCAGGTGAGTCGGCGATGGTTGGCGA
CGCCATAGTAATATATTAAATTGCAGGAGCCACCAGGCATTGAGTCGAGG
TCCACAACAAGCGATAGGGGGTAAGGGGGATCCATGTCCATGGGGGGTAA
GGGGGATCCTGGGTGATGACTTGGGGTTCGATTGTTTTGATTCGAAGTGC
ACAATCGCCGATCTTTTCGGTGAAAGCGAAGGGGGAAAATCGATTTGATG
GATTTGAGCACGGACCATTCCGTCAGATCGTGCTGATCACAACGATTCCA
TTCTGAGGTTTCATGGAGGGTCAGGGGGACCAGGGGGTTCACCACCTTTC
GTCCTTCGACGGTGATGGCAGGACATCATCCCCACTGGACATATTCAAAA
AGACAAAACCCACGGACACAAAGTTCGAGGGGACCAGCCGCGCCGCGGCC
TCAATATCAGTATCATATGTGACTTATACACCCAGAATAATCGCCAAAGA
GTCAAGGAAGAACGAAGATATTAAAATGCTTGCAAATTTTTGATAGTCCC
CGAGAAAAGCGACGGGGAAAGGATGCACCTGCTTTTGTGATATCCCGAAA
GAGAAATTTTGCATGGGATACAACAATAATACGAGTGTTCTCTGGGCAGT
CAATATCGAAATAAATAAATAAATTCCTAAACTGCAATTAAGCAGGGACC
GCCCGCTCGCGAAGTGAAGTAGAAATTAAGAAGCGTCG

protein sequence of NO08G02170.3

>NO08G02170.3-protein ID=NO08G02170.3-protein|Name=NO08G02170.3|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MSCHPGNGAGELVPLLHAGVGTARGSGAGGGGVYGGTSTDGGGPDLASTV
CHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILF
AALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSR
INYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFE
HWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTD
TLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGIS
SRSSTLFDISSSSSSNSSNVDASLCIQLDGRLCLQNCSVNNTVIRGGGMY
GLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAATPPVIETGPIL
PTMIVS*

mRNA from alignment at chr8:638617..642142-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G02170.3 ID=NO08G02170.3|Name=NO08G02170.3|organism=Nannochloropsis oceanica|type=mRNA|length=3526bp|location=Sequence derived from alignment at chr8:638617..642142- (Nannochloropsis oceanica)
ATAGCGCTAGTGAGTCCTCTTTGTCAATCTTCAGTACATGCAGTCCACGG
CATGGTAAGCCACAGCACACACGGCATTCTAGACTCTGACCGAGGTGTAT
GCCCCTTGCTCTGACTGGGCGGTGAGGCTGTCGGCATCATTATTGGCGAG
CCTCTCCGAAGAGTCCAAACCTCGTTTTTCAACTGGTCGATTTTGCGAAT
GTCAAAGTGAGGGAGGAATGGCTGAATGCAAGCCCTGGTGTGCTGCTCTA
CTCTCGGCTCCCACTGCTCCGCACACTTGCTTACCCTACAGGTGTTTTGC
GAGACGCCCCTCGTGTCCGATCGCGTTTTTTGTATTTCCGCTTTACAAGC
GACAACAGTGTATCGGCTCCCGTGGCACACAGTATTGGTTTGCCGACCAC
AACTCCAATCAGCATCACTAGCGCAAGGTCAAGGTAGGGATGTCTGATAG
AAGAGCATTGTGTCAAAAACTTTAGCTAGAAGCCCGTCAAGATCTAAAAT
ATTTTCGTCTCACCCCTCAACTAGTCCATCATCGTACCTGACACACTATT
TCGGAATAGTATTAGCAGCAGAACAGGCGTTTAGAGCATGAGTTGTCACC
CGGGGAATGGAGCAGGCGAGCTAGTGCCCCTGCTACATGCGGGGGTTGGC
ACGGCGAGAGGAAGCGGGGCCGGTGGTGGCGGGGTCTATGGGGGAACGTC
AACCGACGGCGGCGGGCCAGATTTGGCATCGACAGTATGCCATCAAAGTT
CGATTTTTCATTCGATGGGCAAAGGCTCCTTAATGGTGAGGGTTGGAAAG
ATTGAGGAGTAGGAATTAAAGTGGATGTGAATCTGCAATGTTATAAATTT
AATACGCCTCCGTCATCATCTAAACCATATATGCAGGGCAAACGAAAACG
CGGGACCTCAGAGATCCTTCGACAGACGCGTCGTCATCAAACTTATTGTA
AGTGCTAGGAAGTAAGGATATGAGGAAGATTTCAAGGTGCTCTTTTTCTC
TTGACGTGTCTGTCTGCTTGGGAGCGTTCGAAGGGTTCAATATACGAAGA
CTACTGACGGATGCCACTGACTTTTTTTTTACAATATCTTCTCGCCGCTT
TCAGTGGCTTTCTTTTTGTTTACGACTCTGGGCTTCATCCTTTTTGCCGC
ACTCTCGAGAAGCGGGTGGGCTTTAGGTCGCATCATCAGCACCTCTATTC
TTATGCCTGAGAAGGTGCCTTGCCCGCCAAAGATGACTGAACTGGGCCCC
GATGCCAAGTGCGAAGCTTCCGAGCTTGTCATTTTCACAAGTCGGATAAA
TTACGGTACGAGCGCACTGATTCATGCCCGTATATGTTTTACTGATATAT
TGTTCTTAAACATAAAAAAGAAACTCACGTACACATTTTTCTCTCCCGCC
CTCCCTCTTAACCCCCACAGGATTGTTCGGTGACCTGAAATATGAAACAA
CCTCCGAAGTCTCCATTGACACCCGAGCAAAGACCCCGGGTGGGATGACC
CGGACGTGGCTGGAAAAGAAGAACACCCTCGTTTCTAGCGACATCCAACC
CTCCTTCGAGCACTGGTACGTGTTTTGCGTCAATTTTTGTCTTTGTGTTG
AGGTGTGTTTACATATGTTCAAACGGAGGCCCATCGCTCGATTCTTTTCT
TCAGGGTTGGCGGCTAGGCAGTGCAGAAACCTGAAAGTATACTGATACTA
AAACCGCAGTTACGTGCACCTATAAACTTCACCATCCCCAAAATACACGT
ACTCATGCAGGGCCAATAATTTCCCCGAATATTATGACTATGTTCGCTCA
ACTCAAGCCTTTGTCGTTGTCAGCGTCCTTGCTACCGTGACAAGCTTGAT
CTTTCTCAGCTTGATTACCATAGCGCGTCCCGCCCCTATTTGGGTGAGTA
TTATGTAGGGTTAGGGAAGTAGGGGGAGAGGGGGGAAGCACTTATTTGTC
TCTCTTTTTTTTGCATGTCACTTATCCAGTGACCCGAAATTCGAAACATT
CCTTCAATCATCAATCAAATAAATAGGCACGCACAGACACCTTGACTACG
GGTTTTTACGCCCTCCTGCTCTCGACCATCTGCCTTGCCCTTAGCATATT
TGCCTGGATGGTAAGTATATCTCTTTTCCCTTGCTTCCGCTTTAGCTGGA
CTCACCTCTGACACAATCATTGACTCTATATCGTTGTGTGTAAACAGGGC
GTCCCACTTTCCGCCTTTACGACGGAGTGCGGCCCGTCGTCAGCTTTGCC
ATCTCTCAACGGGACCGGTATCAGCAGCAGAAGCTCCACGCTCTTTGATA
TCAGCAGCAGCAGCAGCAGCAATAGCAGCAACGTCGACGCCTCCCTTTGC
ATCCAACTCGACGGGAGACTGTGCCTGCAGAACTGCTCGGTCAACAACAC
TGTCATCCGCGGGGGAGGGATGTATGGCCTGGTCGTCTTCTCCTGCCTCC
TCCAATGTGTTTGCCTCATGTTTTGGGCCGAATTCCAAGAAGAGGTATTG
CGTGGGTATGACCAGACCCCCAGCAGAAGGAGCAGTGCCGCGACGCCTCC
CGTCATTGAAACGGGCCCGATACTGCCGACGATGATAGTGTCCTAATGTG
TCTCCAAGCACGTACGGTGTTTCATTAATTTTCCTCTTTTTTTTTGAAGT
CTGTCAGCAGGGGGAGAGCTGGGTGTCATTAGATAAGGGATGCCCCTCTT
AAAAGCGGGATTTAAGCATGCCACTGCTTTTCGTTTCAGTTTCCTATCGA
GCTTGACTGAGGATCCATAGAAGGTCGGGGATCTGAGTATTGTGAGTCTG
GTGAGTGTGTCAGCAGGTGAGTCGGCGATGGTTGGCGACGCCATAGTAAT
ATATTAAATTGCAGGAGCCACCAGGCATTGAGTCGAGGTCCACAACAAGC
GATAGGGGGTAAGGGGGATCCATGTCCATGGGGGGTAAGGGGGATCCTGG
GTGATGACTTGGGGTTCGATTGTTTTGATTCGAAGTGCACAATCGCCGAT
CTTTTCGGTGAAAGCGAAGGGGGAAAATCGATTTGATGGATTTGAGCACG
GACCATTCCGTCAGATCGTGCTGATCACAACGATTCCATTCTGAGGTTTC
ATGGAGGGTCAGGGGGACCAGGGGGTTCACCACCTTTCGTCCTTCGACGG
TGATGGCAGGACATCATCCCCACTGGACATATTCAAAAAGACAAAACCCA
CGGACACAAAGTTCGAGGGGACCAGCCGCGCCGCGGCCTCAATATCAGTA
TCATATGTGACTTATACACCCAGAATAATCGCCAAAGAGTCAAGGAAGAA
CGAAGATATTAAAATGCTTGCAAATTTTTGATAGTCCCCGAGAAAAGCGA
CGGGGAAAGGATGCACCTGCTTTTGTGATATCCCGAAAGAGAAATTTTGC
ATGGGATACAACAATAATACGAGTGTTCTCTGGGCAGTCAATATCGAAAT
AAATAAATAAATTCCTAAACTGCAATTAAGCAGGGACCGCCCGCTCGCGA
AGTGAAGTAGAAATTAAGAAGCGTCG

Coding sequence (CDS) from alignment at chr8:638617..642142-

>NO08G02170.3 ID=NO08G02170.3|Name=NO08G02170.3|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr8:638617..642142- (Nannochloropsis oceanica)
ATGAGTTGTCACCCGGGGAATGGAGCAGGCGAGCTAGTGCCCCTGCTACA
TGCGGGGGTTGGCACGGCGAGAGGAAGCGGGGCCGGTGGTGGCGGGGTCT
ATGGGGGAACGTCAACCGACGGCGGCGGGCCAGATTTGGCATCGACAGTA
TGCCATCAAAGTTCGATTTTTCATTCGATGGGCAAAGGCTCCTTAATGGG
CAAACGAAAACGCGGGACCTCAGAGATCCTTCGACAGACGCGTCGTCATC
AAACTTATTTGGCTTTCTTTTTGTTTACGACTCTGGGCTTCATCCTTTTT
GCCGCACTCTCGAGAAGCGGGTGGGCTTTAGGTCGCATCATCAGCACCTC
TATTCTTATGCCTGAGAAGGTGCCTTGCCCGCCAAAGATGACTGAACTGG
GCCCCGATGCCAAGTGCGAAGCTTCCGAGCTTGTCATTTTCACAAGTCGG
ATAAATTACGGATTGTTCGGTGACCTGAAATATGAAACAACCTCCGAAGT
CTCCATTGACACCCGAGCAAAGACCCCGGGTGGGATGACCCGGACGTGGC
TGGAAAAGAAGAACACCCTCGTTTCTAGCGACATCCAACCCTCCTTCGAG
CACTGGGCCAATAATTTCCCCGAATATTATGACTATGTTCGCTCAACTCA
AGCCTTTGTCGTTGTCAGCGTCCTTGCTACCGTGACAAGCTTGATCTTTC
TCAGCTTGATTACCATAGCGCGTCCCGCCCCTATTTGGGCACGCACAGAC
ACCTTGACTACGGGTTTTTACGCCCTCCTGCTCTCGACCATCTGCCTTGC
CCTTAGCATATTTGCCTGGATGGGCGTCCCACTTTCCGCCTTTACGACGG
AGTGCGGCCCGTCGTCAGCTTTGCCATCTCTCAACGGGACCGGTATCAGC
AGCAGAAGCTCCACGCTCTTTGATATCAGCAGCAGCAGCAGCAGCAATAG
CAGCAACGTCGACGCCTCCCTTTGCATCCAACTCGACGGGAGACTGTGCC
TGCAGAACTGCTCGGTCAACAACACTGTCATCCGCGGGGGAGGGATGTAT
GGCCTGGTCGTCTTCTCCTGCCTCCTCCAATGTGTTTGCCTCATGTTTTG
GGCCGAATTCCAAGAAGAGGTATTGCGTGGGTATGACCAGACCCCCAGCA
GAAGGAGCAGTGCCGCGACGCCTCCCGTCATTGAAACGGGCCCGATACTG
CCGACGATGATAGTGTCCTAA

Synonyms

Publications