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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:638617..642142 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02170.1 vs.
Match: EWM26645.1 (hypothetical protein Naga_100001g123 [Nannochloropsis gaditana]) HSP 1 Score: 372.1 bits (954), Expect = 2.200e-99 Identity = 198/365 (54.25%), Postives = 260/365 (71.23%), Query Frame = 0
Query: 28 AGGGGVYGGTSTDGGG--PDLASTVCHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILFAALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSRINYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFEHWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTDTLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGISSRSSTLFDISSSSSSNSSNVDASLCIQLDGRLCLQNCSVNNTVIRGGGMYGLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAAT 391
A G G YGG ST+ G PDLAST HQSSIFH+M KGS++G R +EI+R TRRH+ YLAFFLF T F+L A LSR GW LGRII+TS++MP V CPP + E P+A+C+AS++VIF++RINYGLFGDLKY T+SE S+ T+A+ GG +R ++ +VSS+IQ S++ WA NFPEY DY+ +T++ +VVS L+T LI L +I++ PA A+ DTL+ GFYAL LS +CL + + AWMGVPLSAFTTEC P SALP +NGTG+ + + ++S ++C+QLDG LC +NCS ++V RGGGMYG+ VFSCLLQCVCL+FWA+ QEE+ DQ+ R+S T
Sbjct: 22 ASGRGRYGGVSTEDNGNPPDLASTFYHQSSIFHTMRKGSIVGHH-RNLTEIMRGTRRHRLYLAFFLFATSAFVLVAMLSRGGWTLGRIITTSVMMPRVVTCPPALAEWEPNAECKASKIVIFSTRINYGLFGDLKYLTSSETSVHTQAEAAGGESRGLKTREKAIVSSNIQSSYDTWAANFPEYMDYIHTTESCLVVSFLSTALCLILLGVISLGLPASGQAKLDTLSAGFYALALSALCLFVGMLAWMGVPLSAFTTECHP-SALPGVNGTGL-----------NWADTSSDFYGGAMCVQLDGGLCSENCSTTSSVNRGGGMYGIAVFSCLLQCVCLVFWAKLQEELSSADDQSRGGRTSFGT 373
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02170.1 ID=NO08G02170.1|Name=NO08G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2647bp ATAGCGCTAGTGAGTCCTCTTTGTCAATCTTCAGTACATGCAGTCCACGG CATGGTAAGCCACAGCACACACGGCATTCTAGACTCTGACCGAGGTGTAT GCCCCTTGCTCTGACTGGGCGGTGAGGCTGTCGGCATCATTATTGGCGAG CCTCTCCGAAGAGTCCAAACCTCGTTTTTCAACTGGTCGATTTTGCGAAT GTCAAAGTGAGGGAGGAATGGCTGAATGCAAGCCCTGGTGTGCTGCTCTA CTCTCGGCTCCCACTGCTCCGCACACTTGCTTACCCTACAGGTGTTTTGC GAGACGCCCCTCGTGTCCGATCGCGTTTTTTGTATTTCCGCTTTACAAGC GACAACAGTGTATCGGCTCCCGTGGCACACAGTATTGGTTTGCCGACCAC AACTCCAATCAGCATCACTAGCGCAAGGTCAAGTCCATCATCGTACCTGA CACACTATTTCGGAATAGTATTAGCAGCAGAACAGGCGTTTAGAGCATGA GTTGTCACCCGGGGAATGGAGCAGGCGAGCTAGTGCCCCTGCTACATGCG GGGGTTGGCACGGCGAGAGGAAGCGGGGCCGGTGGTGGCGGGGTCTATGG GGGAACGTCAACCGACGGCGGCGGGCCAGATTTGGCATCGACAGTATGCC ATCAAAGTTCGATTTTTCATTCGATGGGCAAAGGCTCCTTAATGGGCAAA CGAAAACGCGGGACCTCAGAGATCCTTCGACAGACGCGTCGTCATCAAAC TTATTTGGCTTTCTTTTTGTTTACGACTCTGGGCTTCATCCTTTTTGCCG CACTCTCGAGAAGCGGGTGGGCTTTAGGTCGCATCATCAGCACCTCTATT CTTATGCCTGAGAAGGTGCCTTGCCCGCCAAAGATGACTGAACTGGGCCC CGATGCCAAGTGCGAAGCTTCCGAGCTTGTCATTTTCACAAGTCGGATAA ATTACGGATTGTTCGGTGACCTGAAATATGAAACAACCTCCGAAGTCTCC ATTGACACCCGAGCAAAGACCCCGGGTGGGATGACCCGGACGTGGCTGGA AAAGAAGAACACCCTCGTTTCTAGCGACATCCAACCCTCCTTCGAGCACT GGGCCAATAATTTCCCCGAATATTATGACTATGTTCGCTCAACTCAAGCC TTTGTCGTTGTCAGCGTCCTTGCTACCGTGACAAGCTTGATCTTTCTCAG CTTGATTACCATAGCGCGTCCCGCCCCTATTTGGGCACGCACAGACACCT TGACTACGGGTTTTTACGCCCTCCTGCTCTCGACCATCTGCCTTGCCCTT AGCATATTTGCCTGGATGGGCGTCCCACTTTCCGCCTTTACGACGGAGTG CGGCCCGTCGTCAGCTTTGCCATCTCTCAACGGGACCGGTATCAGCAGCA GAAGCTCCACGCTCTTTGATATCAGCAGCAGCAGCAGCAGCAATAGCAGC AACGTCGACGCCTCCCTTTGCATCCAACTCGACGGGAGACTGTGCCTGCA GAACTGCTCGGTCAACAACACTGTCATCCGCGGGGGAGGGATGTATGGCC TGGTCGTCTTCTCCTGCCTCCTCCAATGTGTTTGCCTCATGTTTTGGGCC GAATTCCAAGAAGAGGTATTGCGTGGGTATGACCAGACCCCCAGCAGAAG GAGCAGTGCCGCGACGCCTCCCGTCATTGAAACGGGCCCGATACTGCCGA CGATGATAGTGTCCTAATGTGTCTCCAAGCACGTACGGTGTTTCATTAAT TTTCCTCTTTTTTTTTGAAGTCTGTCAGCAGGGGGAGAGCTGGGTGTCAT TAGATAAGGGATGCCCCTCTTAAAAGCGGGATTTAAGCATGCCACTGCTT TTCGTTTCAGTTTCCTATCGAGCTTGACTGAGGATCCATAGAAGGTCGGG GATCTGAGTATTGTGAGTCTGGTGAGTGTGTCAGCAGGTGAGTCGGCGAT GGTTGGCGACGCCATAGTAATATATTAAATTGCAGGAGCCACCAGGCATT GAGTCGAGGTCCACAACAAGCGATAGGGGGTAAGGGGGATCCATGTCCAT GGGGGGTAAGGGGGATCCTGGGTGATGACTTGGGGTTCGATTGTTTTGAT TCGAAGTGCACAATCGCCGATCTTTTCGGTGAAAGCGAAGGGGGAAAATC GATTTGATGGATTTGAGCACGGACCATTCCGTCAGATCGTGCTGATCACA ACGATTCCATTCTGAGGTTTCATGGAGGGTCAGGGGGACCAGGGGGTTCA CCACCTTTCGTCCTTCGACGGTGATGGCAGGACATCATCCCCACTGGACA TATTCAAAAAGACAAAACCCACGGACACAAAGTTCGAGGGGACCAGCCGC GCCGCGGCCTCAATATCAGTATCATATGTGACTTATACACCCAGAATAAT CGCCAAAGAGTCAAGGAAGAACGAAGATATTAAAATGCTTGCAAATTTTT GATAGTCCCCGAGAAAAGCGACGGGGAAAGGATGCACCTGCTTTTGTGAT ATCCCGAAAGAGAAATTTTGCATGGGATACAACAATAATACGAGTGTTCT CTGGGCAGTCAATATCGAAATAAATAAATAAATTCCTAAACTGCAATTAA GCAGGGACCGCCCGCTCGCGAAGTGAAGTAGAAATTAAGAAGCGTCG back to topprotein sequence of NO08G02170.1 >NO08G02170.1-protein ID=NO08G02170.1-protein|Name=NO08G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp MSCHPGNGAGELVPLLHAGVGTARGSGAGGGGVYGGTSTDGGGPDLASTV CHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILF AALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSR INYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFE HWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTD TLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGIS SRSSTLFDISSSSSSNSSNVDASLCIQLDGRLCLQNCSVNNTVIRGGGMY GLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAATPPVIETGPIL PTMIVS* back to topmRNA from alignment at chr8:638617..642142- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02170.1 ID=NO08G02170.1|Name=NO08G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=3526bp|location=Sequence derived from alignment at chr8:638617..642142- (Nannochloropsis oceanica) ATAGCGCTAGTGAGTCCTCTTTGTCAATCTTCAGTACATGCAGTCCACGG
CATGGTAAGCCACAGCACACACGGCATTCTAGACTCTGACCGAGGTGTAT
GCCCCTTGCTCTGACTGGGCGGTGAGGCTGTCGGCATCATTATTGGCGAG
CCTCTCCGAAGAGTCCAAACCTCGTTTTTCAACTGGTCGATTTTGCGAAT
GTCAAAGTGAGGGAGGAATGGCTGAATGCAAGCCCTGGTGTGCTGCTCTA
CTCTCGGCTCCCACTGCTCCGCACACTTGCTTACCCTACAGGTGTTTTGC
GAGACGCCCCTCGTGTCCGATCGCGTTTTTTGTATTTCCGCTTTACAAGC
GACAACAGTGTATCGGCTCCCGTGGCACACAGTATTGGTTTGCCGACCAC
AACTCCAATCAGCATCACTAGCGCAAGGTCAAGGTAGGGATGTCTGATAG
AAGAGCATTGTGTCAAAAACTTTAGCTAGAAGCCCGTCAAGATCTAAAAT
ATTTTCGTCTCACCCCTCAACTAGTCCATCATCGTACCTGACACACTATT
TCGGAATAGTATTAGCAGCAGAACAGGCGTTTAGAGCATGAGTTGTCACC
CGGGGAATGGAGCAGGCGAGCTAGTGCCCCTGCTACATGCGGGGGTTGGC
ACGGCGAGAGGAAGCGGGGCCGGTGGTGGCGGGGTCTATGGGGGAACGTC
AACCGACGGCGGCGGGCCAGATTTGGCATCGACAGTATGCCATCAAAGTT
CGATTTTTCATTCGATGGGCAAAGGCTCCTTAATGGTGAGGGTTGGAAAG
ATTGAGGAGTAGGAATTAAAGTGGATGTGAATCTGCAATGTTATAAATTT
AATACGCCTCCGTCATCATCTAAACCATATATGCAGGGCAAACGAAAACG
CGGGACCTCAGAGATCCTTCGACAGACGCGTCGTCATCAAACTTATTGTA
AGTGCTAGGAAGTAAGGATATGAGGAAGATTTCAAGGTGCTCTTTTTCTC
TTGACGTGTCTGTCTGCTTGGGAGCGTTCGAAGGGTTCAATATACGAAGA
CTACTGACGGATGCCACTGACTTTTTTTTTACAATATCTTCTCGCCGCTT
TCAGTGGCTTTCTTTTTGTTTACGACTCTGGGCTTCATCCTTTTTGCCGC
ACTCTCGAGAAGCGGGTGGGCTTTAGGTCGCATCATCAGCACCTCTATTC
TTATGCCTGAGAAGGTGCCTTGCCCGCCAAAGATGACTGAACTGGGCCCC
GATGCCAAGTGCGAAGCTTCCGAGCTTGTCATTTTCACAAGTCGGATAAA
TTACGGTACGAGCGCACTGATTCATGCCCGTATATGTTTTACTGATATAT
TGTTCTTAAACATAAAAAAGAAACTCACGTACACATTTTTCTCTCCCGCC
CTCCCTCTTAACCCCCACAGGATTGTTCGGTGACCTGAAATATGAAACAA
CCTCCGAAGTCTCCATTGACACCCGAGCAAAGACCCCGGGTGGGATGACC
CGGACGTGGCTGGAAAAGAAGAACACCCTCGTTTCTAGCGACATCCAACC
CTCCTTCGAGCACTGGTACGTGTTTTGCGTCAATTTTTGTCTTTGTGTTG
AGGTGTGTTTACATATGTTCAAACGGAGGCCCATCGCTCGATTCTTTTCT
TCAGGGTTGGCGGCTAGGCAGTGCAGAAACCTGAAAGTATACTGATACTA
AAACCGCAGTTACGTGCACCTATAAACTTCACCATCCCCAAAATACACGT
ACTCATGCAGGGCCAATAATTTCCCCGAATATTATGACTATGTTCGCTCA
ACTCAAGCCTTTGTCGTTGTCAGCGTCCTTGCTACCGTGACAAGCTTGAT
CTTTCTCAGCTTGATTACCATAGCGCGTCCCGCCCCTATTTGGGTGAGTA
TTATGTAGGGTTAGGGAAGTAGGGGGAGAGGGGGGAAGCACTTATTTGTC
TCTCTTTTTTTTGCATGTCACTTATCCAGTGACCCGAAATTCGAAACATT
CCTTCAATCATCAATCAAATAAATAGGCACGCACAGACACCTTGACTACG
GGTTTTTACGCCCTCCTGCTCTCGACCATCTGCCTTGCCCTTAGCATATT
TGCCTGGATGGTAAGTATATCTCTTTTCCCTTGCTTCCGCTTTAGCTGGA
CTCACCTCTGACACAATCATTGACTCTATATCGTTGTGTGTAAACAGGGC
GTCCCACTTTCCGCCTTTACGACGGAGTGCGGCCCGTCGTCAGCTTTGCC
ATCTCTCAACGGGACCGGTATCAGCAGCAGAAGCTCCACGCTCTTTGATA
TCAGCAGCAGCAGCAGCAGCAATAGCAGCAACGTCGACGCCTCCCTTTGC
ATCCAACTCGACGGGAGACTGTGCCTGCAGAACTGCTCGGTCAACAACAC
TGTCATCCGCGGGGGAGGGATGTATGGCCTGGTCGTCTTCTCCTGCCTCC
TCCAATGTGTTTGCCTCATGTTTTGGGCCGAATTCCAAGAAGAGGTATTG
CGTGGGTATGACCAGACCCCCAGCAGAAGGAGCAGTGCCGCGACGCCTCC
CGTCATTGAAACGGGCCCGATACTGCCGACGATGATAGTGTCCTAATGTG
TCTCCAAGCACGTACGGTGTTTCATTAATTTTCCTCTTTTTTTTTGAAGT
CTGTCAGCAGGGGGAGAGCTGGGTGTCATTAGATAAGGGATGCCCCTCTT
AAAAGCGGGATTTAAGCATGCCACTGCTTTTCGTTTCAGTTTCCTATCGA
GCTTGACTGAGGATCCATAGAAGGTCGGGGATCTGAGTATTGTGAGTCTG
GTGAGTGTGTCAGCAGGTGAGTCGGCGATGGTTGGCGACGCCATAGTAAT
ATATTAAATTGCAGGAGCCACCAGGCATTGAGTCGAGGTCCACAACAAGC
GATAGGGGGTAAGGGGGATCCATGTCCATGGGGGGTAAGGGGGATCCTGG
GTGATGACTTGGGGTTCGATTGTTTTGATTCGAAGTGCACAATCGCCGAT
CTTTTCGGTGAAAGCGAAGGGGGAAAATCGATTTGATGGATTTGAGCACG
GACCATTCCGTCAGATCGTGCTGATCACAACGATTCCATTCTGAGGTTTC
ATGGAGGGTCAGGGGGACCAGGGGGTTCACCACCTTTCGTCCTTCGACGG
TGATGGCAGGACATCATCCCCACTGGACATATTCAAAAAGACAAAACCCA
CGGACACAAAGTTCGAGGGGACCAGCCGCGCCGCGGCCTCAATATCAGTA
TCATATGTGACTTATACACCCAGAATAATCGCCAAAGAGTCAAGGAAGAA
CGAAGATATTAAAATGCTTGCAAATTTTTGATAGTCCCCGAGAAAAGCGA
CGGGGAAAGGATGCACCTGCTTTTGTGATATCCCGAAAGAGAAATTTTGC
ATGGGATACAACAATAATACGAGTGTTCTCTGGGCAGTCAATATCGAAAT
AAATAAATAAATTCCTAAACTGCAATTAAGCAGGGACCGCCCGCTCGCGA
AGTGAAGTAGAAATTAAGAAGCGTCG back to topCoding sequence (CDS) from alignment at chr8:638617..642142- >NO08G02170.1 ID=NO08G02170.1|Name=NO08G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr8:638617..642142- (Nannochloropsis oceanica) ATGAGTTGTCACCCGGGGAATGGAGCAGGCGAGCTAGTGCCCCTGCTACA TGCGGGGGTTGGCACGGCGAGAGGAAGCGGGGCCGGTGGTGGCGGGGTCT ATGGGGGAACGTCAACCGACGGCGGCGGGCCAGATTTGGCATCGACAGTA TGCCATCAAAGTTCGATTTTTCATTCGATGGGCAAAGGCTCCTTAATGGG CAAACGAAAACGCGGGACCTCAGAGATCCTTCGACAGACGCGTCGTCATC AAACTTATTTGGCTTTCTTTTTGTTTACGACTCTGGGCTTCATCCTTTTT GCCGCACTCTCGAGAAGCGGGTGGGCTTTAGGTCGCATCATCAGCACCTC TATTCTTATGCCTGAGAAGGTGCCTTGCCCGCCAAAGATGACTGAACTGG GCCCCGATGCCAAGTGCGAAGCTTCCGAGCTTGTCATTTTCACAAGTCGG ATAAATTACGGATTGTTCGGTGACCTGAAATATGAAACAACCTCCGAAGT CTCCATTGACACCCGAGCAAAGACCCCGGGTGGGATGACCCGGACGTGGC TGGAAAAGAAGAACACCCTCGTTTCTAGCGACATCCAACCCTCCTTCGAG CACTGGGCCAATAATTTCCCCGAATATTATGACTATGTTCGCTCAACTCA AGCCTTTGTCGTTGTCAGCGTCCTTGCTACCGTGACAAGCTTGATCTTTC TCAGCTTGATTACCATAGCGCGTCCCGCCCCTATTTGGGCACGCACAGAC ACCTTGACTACGGGTTTTTACGCCCTCCTGCTCTCGACCATCTGCCTTGC CCTTAGCATATTTGCCTGGATGGGCGTCCCACTTTCCGCCTTTACGACGG AGTGCGGCCCGTCGTCAGCTTTGCCATCTCTCAACGGGACCGGTATCAGC AGCAGAAGCTCCACGCTCTTTGATATCAGCAGCAGCAGCAGCAGCAATAG CAGCAACGTCGACGCCTCCCTTTGCATCCAACTCGACGGGAGACTGTGCC TGCAGAACTGCTCGGTCAACAACACTGTCATCCGCGGGGGAGGGATGTAT GGCCTGGTCGTCTTCTCCTGCCTCCTCCAATGTGTTTGCCTCATGTTTTG GGCCGAATTCCAAGAAGAGGTATTGCGTGGGTATGACCAGACCCCCAGCA GAAGGAGCAGTGCCGCGACGCCTCCCGTCATTGAAACGGGCCCGATACTG CCGACGATGATAGTGTCCTAA back to top
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