NO05G02330, NO05G02330 (gene) Nannochloropsis oceanica

Overview
NameNO05G02330
Unique NameNO05G02330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3505
Alignment locationchr5:616061..619565 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:616061..619565 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR035441TFIIS/LEDGF_dom_sf
IPR000313PWWP_dom
IPR017923TFIIS_N
IPR003617TFIIS/CRSP70_N_sub
Homology
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BLAST of NO05G02330 vs. NCBI_GenBank
Match: EWM28247.1 (hypothetical protein Naga_100004g157 [Nannochloropsis gaditana])

HSP 1 Score: 301.6 bits (771), Expect = 4.000e-78
Identity = 176/357 (49.30%), Postives = 223/357 (62.46%), Query Frame = 0 
Query:   68 LRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPGFIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNIELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNLQILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGVGQVVKGLRKHAEAEIQTKAKAAFTRWKESFKQDIQPAALEQVAATDSKMEKKEKESKTDAKDEGPATSSIPQPAVPPSPQEKEAAFCG 425
            LRAA++  MPE++K RLK+VVWAKSAGF+HWPGFIYHPADV++DLR+SCYS+AKAK GP+THHI FY+ YG N+F +VPFKNIE +TK ++    KA KR K KI +AI  A E+A +P  ERSPGP D KS+                                                           +  +     SG  A +G KK KKDFE+ESE++RFNRLSRNLQI+L+D+ LNVPKICSTLEK+S+M VTIEQLTESGVGQVVKGLRKHA++EIQ +AKAAF+RWKE+FKQ+I+ A  E     D  +E+K +E+    +D+  +     Q   P +    E    G
Sbjct:   94 LRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYYNYGPNAFDSVPFKNIEPWTKESKEAFAKASKRFKDKIPEAINLAEEDAARPMAERSPGPLDLKSV----RERAREEVKQSGQGGQNALRKGTSNKQQSFLTSEKSRINETHEALKGKKKKRLHADDEISGARPSGG-AAQGVKKWKKDFERESEKDRFNRLSRNLQIMLEDEILNVPKICSTLEKLSAMTVTIEQLTESGVGQVVKGLRKHAQSEIQVQAKAAFSRWKENFKQEIKMAP-EPAVPGDVNLERKRQEAHDPKEDKIESQKPDAQSYTPTASTNAETTSSG 444
The following BLAST results are available for this feature:
BLAST of NO05G02330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28247.14.000e-7849.30hypothetical protein Naga_100004g157 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003633NSK003633Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02330.1NO05G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02330.2NO05G02330.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02330.3NO05G02330.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02330.4NO05G02330.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02330.5NO05G02330.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02330.6NO05G02330.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02330.7NO05G02330.7-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02330.1NO05G02330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02330.2NO05G02330.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02330.3NO05G02330.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02330.4NO05G02330.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02330.5NO05G02330.5Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02330.6NO05G02330.6Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02330.7NO05G02330.7Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100004g157gene2403Nannochloropsis gaditana (N. gaditana B-31)gene
jgi.p|Nanoce1779_2|584283gene_3034Nannochloropsis oceanica (N. oceanica CCMP1779)gene


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02330 ID=NO05G02330|Name=NO05G02330|organism=Nannochloropsis oceanica|type=gene|length=3505bp
CAAGAAGTGATTCATGTCTACGATCCCTCAGTCCTTCTCCCGGTTGCTTG
CATTAAGGTCTAATTCTTACACTACCACTAACCTCCCCCCTCCCTCCCTG
CCCTGCTTAGTCTGCTTAGTGGCTTCTGCACAGCGGACCAGACCACCTCA
CACCCCTTTTCCTTTCTCACTCGCCTGTCACGCCCTACGCTTAGCCAGCA
AACCACAGCGACTGACATATGTACAAATTCTTTCGAATTGGGGTGAGAAA
ATTTTCATCTCACGTTGCACATTGATGATGATTCTGAGGAGTCATAGAAT
GAATAGACTTTTCTTCGTCCTATTACTACAAGCTCTACCCAGCTGCGAGG
TTACAGCACATTTTGGGTACCTTGGAGTTCTGGATCGCTGAGTGTTTCCA
CTGATACGTCGTTTCCATCTCCCTTTCGTGGCACGGCCACATAGTAGGGA
GGGTCGTACCAGTCATTCCCTCCAAGCCTCACCGCCGTACTGCTGTCGCA
ACAGTCGTACTCACAGTCGGTGACTCACTCCCCAAGCGCCACTTTATCAG
GATAAGTAAGCCAATCATGTCGGACAACGCGCCTGTCCCCGAGCAGAAGG
AGGACGAGATGCAAGAAGAGGAGGACATTGACGACGAGGCTTTGGAGGAG
GAGGGCAGCGCAGGGGAAGACAGCAGTGCCAACGGCGAAGAGGAGGAAGA
CGAAGAAGAAGAAAGAGAGGAGAAAGAGGAGGAGGAGGAGAAGGAAGGCG
ACGAGGCGAGCGAGGAACTGCGGGCCGCGATGATTGGGGACATGCCGGAA
GAAGAGAAATTACGCCTGAAAGAGGTTGTGTGGGCCAAGAGCGCTGGCTT
TGCCCATTGGCCTGGTTTTATCTACCATCCTGCgtaagtaagattgggct
cgttctgttgatgaccacctgttattgtttccccaatgtgacgacctcac
ctccaatttcttccattccctcgctcaccgaccactttgtttttcccagG
GACGTGAAGGAAGACTTGCGCAAGAGCTGCTACTCTACTGCCAAGGCGAA
GCATGGACCCAAGACACATCACATTTGCTTCTATTTTGGCTATGGCGCCA
ACTCTTTTGgtaatagtcataaataataatagtaatataattaagatagt
agtgattgtaagcagacaaagaagaacaagaaaaaggagatgaagaaagg
ggaaagcgaaagacgatggagtgagtggccagcctcctgtgtatccttcc
atagtgctgcttctgtcttgcatttcgcacaacgggtctgacctagcatt
catcttctccctttctacctatgctttgtccctacacagCTGCCGTACCG
TTCAAAAATATCGAGCTGTTTACCAAGGCAAATGAGGCGGTCATGATCAA
GGCTTTGAAACGGGACAAAGCCAAGATTGCGGACGCCATCAAAGAGGCGT
TGGAGGAGGCGGACAAGCCCAAAGAGGAGCGCTCTCCGGGGCCGCCGGAC
ACAAAGAGCATCAAGAAGCAGGAGCAAGAGGAAAAGAAAAAGGCCAAAAT
GCTGGAGCGACAGAGAAAAAATGAGGAGAAGAAGACCAAAAGAATGGAGG
ACCAGGGAGCTACAGGAAAGAAAAAAAGGAAGAAGTATGAGGAAGATGGA
Ggtgagtgacacggtgttcgaaaaagagcaggcagtcgtcggcatcataa
tgtaaagtaaagagggtgtcagatttccttcagcttcagtcactcatcca
tctttctcctcaaatggtttgaatcacagATGCCGGCGAAGAGAAGAAAA
AGAAAAAGAAGCGACCAAATACATCTCTCGAGAGAGTCGGGGGGTCTGGC
GCATGGGCAACCAAGGGGCCGAAGAAGATGAAAAAAGACTTCGAAAAAGA
GAGCGAGGAAGAACGGTTCAACCGTCTGTCACGTAACCTACAGATTCTGC
TCGACGACCAAAACCTGAACGTGCCAAAAATCTGCAGTACCTTGgtgagg
aaaggagacagacaacgaaagcaccaccacagaccatttaacatgattta
tcgcgcgtctcacattcaccccgtctcttctcaccctccctatttaacag
GAAAAAGTTTCGTCCATGGCTGTGACCATTGAGCAACTGACGGAGAGCGg
tacgtatgtatggtgcttatactatccccccgcctcccttttatcccctt
tgacttccttctccctttctctactatgctgccttaatcataagGGGTGG
GCCAGGTGGTTAAAGGCCTCCGGAAACACGCAGAGGCCGAAATCCAGACT
AAGGCTAAGGCGGCCTTCACCCGCTGGAAGGAGAGTTTTAAGCAGGACAT
CCAGCCAGCAGCGCTCGAACAAGTCGCCGCCACAGATTCGAAGATGGAGA
AGAAAGAGAAGGAGAGCAAGACGGATGCGAAGGATGAGGGGCCGGCCACA
TCGTCAATTCCTCAGCCAGCGGTGCCACCCTCTCCACAAGAGAAGGAGGC
AGCGTTTTGTGGTGAGGAAGGGCAGAGgtacgtgagcctaacatgaggga
gagagagagagagaagtagggagtctgagaagaagagttagcgagtgcat
gttattttgtgactccctttcgtctgggctcgcccatgccagacgaaagc
aacgctcgcagtcgcaatcagacactgtctgacccctggacggtatctct
tcccatcctacctcgctgacagATCGGCGATTCAGGCAGGCGATGGTACG
GTAGTCCCCATCGTTGGAGATGGTTGGTACGGACGGGTGATTGGAACGAA
GGATAGAAATGAAACAGAGGTGGGAGTTACTTCATGCTGGGGCTGTTTCA
GAGCCTTAGCACGACCAAAATATTCGCAAGTACACCCACACCCATTCATA
CATTAACCCACGTGCTTGTGCCCTAATTACCACGTTCTCATCATAGGGAC
AGGAATGGCGCAAAATGAAGAAGCAAGGGCGGCAGCAGCTGCAGCGACAG
CAGCGACAGGCTGTGAGGATTAAGAAGGGGGGGAAGGAGCAGGAAGGAGA
AGTGAGGAGGGATGTCAAGAAATTGGAAATGCATGTAGGGTGTCTGGGAC
CGCAGGTGTTTGCGAAAGAAGTCCAGTCGGGCACGTCTCTCCATCATCAT
GTTGGCTGATGGACGGACTTGCCTTCTTGCACGTTTTTTAGGATGTGCGG
GGTATGACGAGGAGCTCTAAAGCGACTTATCGTATATAATATTGATTGTT
AGGCAGATGGAGGAACACATAATGCTGGGAAGTGAGGTCAAGGTAAAGAG
AAGATACTACACGAAGATAACCAAGAGTGACCAGAAAGCAGTAGAAAGGC
AGTGACCGATAATGACTTACTCATAATATGCCTACCTGCACGAAGAAAAC
AATCTCAAGACACGTAACGTGTTCGACTTATTCTTGTGAAGAAGTTCCCT
ATGGAAACACTTAAAGCAAAATGAAATAAAGGTGGTAAGCTCACCGCTCA
TTTGC
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protein sequence of NO05G02330.1

>NO05G02330.1-protein ID=NO05G02330.1-protein|Name=NO05G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MSDNAPVPEQKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEER
EEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPG
FIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNI
ELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSI
KKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGE
EKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNL
QILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGVGQVVKGLRKHAEAE
IQTKAKAAFTRWKESFKQDIQPAALEQVAATDSKMEKKEKESKTDAKDEG
PATSSIPQPAVPPSPQEKEAAFCGEEGQRSAIQAGDGTGMAQNEEARAAA
AAATAATGCED*
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protein sequence of NO05G02330.2

>NO05G02330.2-protein ID=NO05G02330.2-protein|Name=NO05G02330.2|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MSDNAPVPEQKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEER
EEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPG
FIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNI
ELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSI
KKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGE
EKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNL
QILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGVGQVVKGLRKHAEAE
IQTKAKAAFTRWKESFKQDIQPAALEQVAATDSKMEKKEKESKTDAKDEG
PATSSIPQPAVPPSPQEKEAAFCGEEGQRSAIQAGDGTVVPIVGDGTGMA
QNEEARAAAAAATAATGCED*
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protein sequence of NO05G02330.3

>NO05G02330.3-protein ID=NO05G02330.3-protein|Name=NO05G02330.3|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MSDNAPVPEQKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEER
EEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPG
FIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNI
ELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSI
KKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGE
EKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNL
QILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGVGQVVKGLRKHAEAE
IQTKAKAAFTRWKESFKQDIQPAALEQVAATDSKMEKKEKESKTDAKDEG
PATSSIPQPAVPPSPQEKEAAFCGEEGQRSAIQAGDGTVVPIVGDGWYGR
VIGTKDRNETEGQEWRKMKKQGRQQLQRQQRQAVRIKKGGKEQEGEVRRD
VKKLEMHVGCLGPQVFAKEVQSGTSLHHHVG*
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protein sequence of NO05G02330.4

>NO05G02330.4-protein ID=NO05G02330.4-protein|Name=NO05G02330.4|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MSDNAPVPEQKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEER
EEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPG
FIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNI
ELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSI
KKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGE
EKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNL
QILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGVGQVVKGLRKHAEAE
IQTKAKAAFTRWKESFKQDIQPAALEQVAATDSKMEKKEKESKTDAKDEG
PATSSIPQPAVPPSPQEKEAAFCGEEGQRSAIQAGDGTVVPIVGDGWYGR
VIGTKDRNETEVGVTSCWGCFRALARPKYSQVHPHPFIH*
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protein sequence of NO05G02330.5

>NO05G02330.5-protein ID=NO05G02330.5-protein|Name=NO05G02330.5|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MSDNAPVPEQKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEER
EEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPG
FIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNI
ELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSI
KKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGE
EKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNL
QILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGVGQVVKGLRKHAEAE
IQTKAKAAFTRWKESFKQDIQPAALEQVAATDSKMEKKEKESKTDAKDEG
PATSSIPQPAVPPSPQEKEAAFCGEEGQRDRNGAK*
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protein sequence of NO05G02330.6

>NO05G02330.6-protein ID=NO05G02330.6-protein|Name=NO05G02330.6|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MSDNAPVPEQKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEER
EEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPG
FIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNI
ELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSI
KKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGE
EKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNL
QILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGVGQVVKGLRKHAEAE
IQTKAKAAFTRWKESFKQDIQPAALEQVAATDSKMEKKEKESKTDAKDEG
PATSSIPQPAVPPSPQEKEAAFCGEEGQRYVSLT*
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protein sequence of NO05G02330.7

>NO05G02330.7-protein ID=NO05G02330.7-protein|Name=NO05G02330.7|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MSDNAPVPEQKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEER
EEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPG
FIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNI
ELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSI
KKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGE
EKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNL
QILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGTYVWCLYYPPASLLS
PLTSFSLSLLCCLNHKGWARWLKASGNTQRPKSRLRLRRPSPAGRRVLSR
TSSQQRSNKSPPQIRRWRRKRRRARRMRRMRGRPHRQFLSQRCHPLHKRR
RQRFVVRKGRGT*
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Synonyms
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