NO05G02330.7, NO05G02330.7 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G02330.7
Unique Name	NO05G02330.7
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2925
Alignment location	chr5:616061..619565 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:616061..619565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G02330.7 vs.
Match: EWM28247.1 (hypothetical protein Naga_100004g157 [Nannochloropsis gaditana])

HSP 1 Score: 262.3 bits (669), Expect = 2.800e-66
Identity = 178/326 (54.60%), Postives = 230/326 (70.55%), Query Frame = 0

Query:   10 QKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEEREEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPGFIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNIELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSIKKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGEEKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNLQILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESG 336
            +K +E  EEEDIDD+ALE+EGSAG D S      +D E E E+  + EEKE       LRAA++  MPE++K RLK+VVWAKSAGF+HWPGFIYHPADV++DLR+SCYS+AKAK GP+THHI FY+ YG N+F +VPFKNIE +TK ++    KA KR K KI +AI  A E+A +P  ERSPGP D KS++++ +EE K++   +  +    K T   +    T +K R    E  +A + KKKK+   +  +     SG  A +G KK KKDFE+ESE++RFNRLSRNLQI+L+D+ LNVPKICSTLEK+S+M VTIEQLTESG
Sbjct:   45 KKTEEEGEEEDIDDDALEDEGSAGGDVSGG----KDVEVEGEDDIDSEEKEA-----ALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYYNYGPNAFDSVPFKNIEPWTKESKEAFAKASKRFKDKIPEAINLAEEDAARPMAERSPGPLDLKSVRERAREEVKQSG--QGGQNALRKGTSNKQQSFLTSEKSR--INETHEALKGKKKKRLHADDEISGARPSGG-AAQGVKKWKKDFERESEKDRFNRLSRNLQIMLEDEILNVPKICSTLEKLSAMTVTIEQLTESG 356

The following BLAST results are available for this feature:

BLAST of NO05G02330.7 vs.

BLAST of NO05G02330.7 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28247.1	2.800e-66	54.60	hypothetical protein Naga_100004g157 [Nannochlorop...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G02330	NO05G02330	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02330.7	NO05G02330.7-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02330.7.cds1	NO05G02330.7.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02330.7.cds2	NO05G02330.7.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02330.7.cds3	NO05G02330.7.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02330.7.cds4	NO05G02330.7.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02330.7.cds5	NO05G02330.7.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:616061..619565+
coding sequence from alignment at chr5:616061..619565+

mRNA sequence

>NO05G02330.7 ID=NO05G02330.7|Name=NO05G02330.7|organism=Nannochloropsis oceanica|type=mRNA|length=2925bp
CAAGAAGTGATTCATGTCTACGATCCCTCAGTCCTTCTCCCGGTTGCTTG
CATTAAGGTCTAATTCTTACACTACCACTAACCTCCCCCCTCCCTCCCTG
CCCTGCTTAGTCTGCTTAGTGGCTTCTGCACAGCGGACCAGACCACCTCA
CACCCCTTTTCCTTTCTCACTCGCCTGTCACGCCCTACGCTTAGCCAGCA
AACCACAGCGACTGACATATGTACAAATTCTTTCGAATTGGGGTGAGAAA
ATTTTCATCTCACGTTGCACATTGATGATGATTCTGAGGAGTCATAGAAT
GAATAGACTTTTCTTCGTCCTATTACTACAAGCTCTACCCAGCTGCGAGG
TTACAGCACATTTTGGGTACCTTGGAGTTCTGGATCGCTGAGTGTTTCCA
CTGATACGTCGTTTCCATCTCCCTTTCGTGGCACGGCCACATAGTAGGGA
GGGTCGTACCAGTCATTCCCTCCAAGCCTCACCGCCGTACTGCTGTCGCA
ACAGTCGTACTCACAGTCGGTGACTCACTCCCCAAGCGCCACTTTATCAG
GATAAGTAAGCCAATCATGTCGGACAACGCGCCTGTCCCCGAGCAGAAGG
AGGACGAGATGCAAGAAGAGGAGGACATTGACGACGAGGCTTTGGAGGAG
GAGGGCAGCGCAGGGGAAGACAGCAGTGCCAACGGCGAAGAGGAGGAAGA
CGAAGAAGAAGAAAGAGAGGAGAAAGAGGAGGAGGAGGAGAAGGAAGGCG
ACGAGGCGAGCGAGGAACTGCGGGCCGCGATGATTGGGGACATGCCGGAA
GAAGAGAAATTACGCCTGAAAGAGGTTGTGTGGGCCAAGAGCGCTGGCTT
TGCCCATTGGCCTGGTTTTATCTACCATCCTGCGGACGTGAAGGAAGACT
TGCGCAAGAGCTGCTACTCTACTGCCAAGGCGAAGCATGGACCCAAGACA
CATCACATTTGCTTCTATTTTGGCTATGGCGCCAACTCTTTTGCTGCCGT
ACCGTTCAAAAATATCGAGCTGTTTACCAAGGCAAATGAGGCGGTCATGA
TCAAGGCTTTGAAACGGGACAAAGCCAAGATTGCGGACGCCATCAAAGAG
GCGTTGGAGGAGGCGGACAAGCCCAAAGAGGAGCGCTCTCCGGGGCCGCC
GGACACAAAGAGCATCAAGAAGCAGGAGCAAGAGGAAAAGAAAAAGGCCA
AAATGCTGGAGCGACAGAGAAAAAATGAGGAGAAGAAGACCAAAAGAATG
GAGGACCAGGGAGCTACAGGAAAGAAAAAAAGGAAGAAGTATGAGGAAGA
TGGAGATGCCGGCGAAGAGAAGAAAAAGAAAAAGAAGCGACCAAATACAT
CTCTCGAGAGAGTCGGGGGGTCTGGCGCATGGGCAACCAAGGGGCCGAAG
AAGATGAAAAAAGACTTCGAAAAAGAGAGCGAGGAAGAACGGTTCAACCG
TCTGTCACGTAACCTACAGATTCTGCTCGACGACCAAAACCTGAACGTGC
CAAAAATCTGCAGTACCTTGGAAAAAGTTTCGTCCATGGCTGTGACCATT
GAGCAACTGACGGAGAGCGGTACGTATGTATGGTGCTTATACTATCCCCC
CGCCTCCCTTTTATCCCCTTTGACTTCCTTCTCCCTTTCTCTACTATGCT
GCCTTAATCATAAGGGGTGGGCCAGGTGGTTAAAGGCCTCCGGAAACACG
CAGAGGCCGAAATCCAGACTAAGGCTAAGGCGGCCTTCACCCGCTGGAAG
GAGAGTTTTAAGCAGGACATCCAGCCAGCAGCGCTCGAACAAGTCGCCGC
CACAGATTCGAAGATGGAGAAGAAAGAGAAGGAGAGCAAGACGGATGCGA
AGGATGAGGGGCCGGCCACATCGTCAATTCCTCAGCCAGCGGTGCCACCC
TCTCCACAAGAGAAGGAGGCAGCGTTTTGTGGTGAGGAAGGGCAGAGGTA
CGTGAGCCTAACATGAGGGAGAGAGAGAGAGAGAAGTAGGGAGTCTGAGA
AGAAGAGTTAGCGAGTGCATGTTATTTTGTGACTCCCTTTCGTCTGGGCT
CGCCCATGCCAGACGAAAGCAACGCTCGCAGTCGCAATCAGACACTGTCT
GACCCCTGGACGGTATCTCTTCCCATCCTACCTCGCTGACAGATCGGCGA
TTCAGGCAGGCGATGGTACGGTAGTCCCCATCGTTGGAGATGGTTGGTAC
GGACGGGTGATTGGAACGAAGGATAGAAATGAAACAGAGGTGGGAGTTAC
TTCATGCTGGGGCTGTTTCAGAGCCTTAGCACGACCAAAATATTCGCAAG
TACACCCACACCCATTCATACATTAACCCACGTGCTTGTGCCCTAATTAC
CACGTTCTCATCATAGGGACAGGAATGGCGCAAAATGAAGAAGCAAGGGC
GGCAGCAGCTGCAGCGACAGCAGCGACAGGCTGTGAGGATTAAGAAGGGG
GGGAAGGAGCAGGAAGGAGAAGTGAGGAGGGATGTCAAGAAATTGGAAAT
GCATGTAGGGTGTCTGGGACCGCAGGTGTTTGCGAAAGAAGTCCAGTCGG
GCACGTCTCTCCATCATCATGTTGGCTGATGGACGGACTTGCCTTCTTGC
ACGTTTTTTAGGATGTGCGGGGTATGACGAGGAGCTCTAAAGCGACTTAT
CGTATATAATATTGATTGTTAGGCAGATGGAGGAACACATAATGCTGGGA
AGTGAGGTCAAGGTAAAGAGAAGATACTACACGAAGATAACCAAGAGTGA
CCAGAAAGCAGTAGAAAGGCAGTGACCGATAATGACTTACTCATAATATG
CCTACCTGCACGAAGAAAACAATCTCAAGACACGTAACGTGTTCGACTTA
TTCTTGTGAAGAAGTTCCCTATGGAAACACTTAAAGCAAAATGAAATAAA
GGTGGTAAGCTCACCGCTCATTTGC

protein sequence of NO05G02330.7

>NO05G02330.7-protein ID=NO05G02330.7-protein|Name=NO05G02330.7|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MSDNAPVPEQKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEER
EEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPG
FIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNI
ELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSI
KKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGE
EKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNL
QILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGTYVWCLYYPPASLLS
PLTSFSLSLLCCLNHKGWARWLKASGNTQRPKSRLRLRRPSPAGRRVLSR
TSSQQRSNKSPPQIRRWRRKRRRARRMRRMRGRPHRQFLSQRCHPLHKRR
RQRFVVRKGRGT*

mRNA from alignment at chr5:616061..619565+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G02330.7 ID=NO05G02330.7|Name=NO05G02330.7|organism=Nannochloropsis oceanica|type=mRNA|length=3505bp|location=Sequence derived from alignment at chr5:616061..619565+ (Nannochloropsis oceanica)
CAAGAAGTGATTCATGTCTACGATCCCTCAGTCCTTCTCCCGGTTGCTTG
CATTAAGGTCTAATTCTTACACTACCACTAACCTCCCCCCTCCCTCCCTG
CCCTGCTTAGTCTGCTTAGTGGCTTCTGCACAGCGGACCAGACCACCTCA
CACCCCTTTTCCTTTCTCACTCGCCTGTCACGCCCTACGCTTAGCCAGCA
AACCACAGCGACTGACATATGTACAAATTCTTTCGAATTGGGGTGAGAAA
ATTTTCATCTCACGTTGCACATTGATGATGATTCTGAGGAGTCATAGAAT
GAATAGACTTTTCTTCGTCCTATTACTACAAGCTCTACCCAGCTGCGAGG
TTACAGCACATTTTGGGTACCTTGGAGTTCTGGATCGCTGAGTGTTTCCA
CTGATACGTCGTTTCCATCTCCCTTTCGTGGCACGGCCACATAGTAGGGA
GGGTCGTACCAGTCATTCCCTCCAAGCCTCACCGCCGTACTGCTGTCGCA
ACAGTCGTACTCACAGTCGGTGACTCACTCCCCAAGCGCCACTTTATCAG
GATAAGTAAGCCAATCATGTCGGACAACGCGCCTGTCCCCGAGCAGAAGG
AGGACGAGATGCAAGAAGAGGAGGACATTGACGACGAGGCTTTGGAGGAG
GAGGGCAGCGCAGGGGAAGACAGCAGTGCCAACGGCGAAGAGGAGGAAGA
CGAAGAAGAAGAAAGAGAGGAGAAAGAGGAGGAGGAGGAGAAGGAAGGCG
ACGAGGCGAGCGAGGAACTGCGGGCCGCGATGATTGGGGACATGCCGGAA
GAAGAGAAATTACGCCTGAAAGAGGTTGTGTGGGCCAAGAGCGCTGGCTT
TGCCCATTGGCCTGGTTTTATCTACCATCCTGCGTAAGTAAGATTGGGCT
CGTTCTGTTGATGACCACCTGTTATTGTTTCCCCAATGTGACGACCTCAC
CTCCAATTTCTTCCATTCCCTCGCTCACCGACCACTTTGTTTTTCCCAGG
GACGTGAAGGAAGACTTGCGCAAGAGCTGCTACTCTACTGCCAAGGCGAA
GCATGGACCCAAGACACATCACATTTGCTTCTATTTTGGCTATGGCGCCA
ACTCTTTTGGTAATAGTCATAAATAATAATAGTAATATAATTAAGATAGT
AGTGATTGTAAGCAGACAAAGAAGAACAAGAAAAAGGAGATGAAGAAAGG
GGAAAGCGAAAGACGATGGAGTGAGTGGCCAGCCTCCTGTGTATCCTTCC
ATAGTGCTGCTTCTGTCTTGCATTTCGCACAACGGGTCTGACCTAGCATT
CATCTTCTCCCTTTCTACCTATGCTTTGTCCCTACACAGCTGCCGTACCG
TTCAAAAATATCGAGCTGTTTACCAAGGCAAATGAGGCGGTCATGATCAA
GGCTTTGAAACGGGACAAAGCCAAGATTGCGGACGCCATCAAAGAGGCGT
TGGAGGAGGCGGACAAGCCCAAAGAGGAGCGCTCTCCGGGGCCGCCGGAC
ACAAAGAGCATCAAGAAGCAGGAGCAAGAGGAAAAGAAAAAGGCCAAAAT
GCTGGAGCGACAGAGAAAAAATGAGGAGAAGAAGACCAAAAGAATGGAGG
ACCAGGGAGCTACAGGAAAGAAAAAAAGGAAGAAGTATGAGGAAGATGGA
GGTGAGTGACACGGTGTTCGAAAAAGAGCAGGCAGTCGTCGGCATCATAA
TGTAAAGTAAAGAGGGTGTCAGATTTCCTTCAGCTTCAGTCACTCATCCA
TCTTTCTCCTCAAATGGTTTGAATCACAGATGCCGGCGAAGAGAAGAAAA
AGAAAAAGAAGCGACCAAATACATCTCTCGAGAGAGTCGGGGGGTCTGGC
GCATGGGCAACCAAGGGGCCGAAGAAGATGAAAAAAGACTTCGAAAAAGA
GAGCGAGGAAGAACGGTTCAACCGTCTGTCACGTAACCTACAGATTCTGC
TCGACGACCAAAACCTGAACGTGCCAAAAATCTGCAGTACCTTGGTGAGG
AAAGGAGACAGACAACGAAAGCACCACCACAGACCATTTAACATGATTTA
TCGCGCGTCTCACATTCACCCCGTCTCTTCTCACCCTCCCTATTTAACAG
GAAAAAGTTTCGTCCATGGCTGTGACCATTGAGCAACTGACGGAGAGCGG
TACGTATGTATGGTGCTTATACTATCCCCCCGCCTCCCTTTTATCCCCTT
TGACTTCCTTCTCCCTTTCTCTACTATGCTGCCTTAATCATAAGGGGTGG
GCCAGGTGGTTAAAGGCCTCCGGAAACACGCAGAGGCCGAAATCCAGACT
AAGGCTAAGGCGGCCTTCACCCGCTGGAAGGAGAGTTTTAAGCAGGACAT
CCAGCCAGCAGCGCTCGAACAAGTCGCCGCCACAGATTCGAAGATGGAGA
AGAAAGAGAAGGAGAGCAAGACGGATGCGAAGGATGAGGGGCCGGCCACA
TCGTCAATTCCTCAGCCAGCGGTGCCACCCTCTCCACAAGAGAAGGAGGC
AGCGTTTTGTGGTGAGGAAGGGCAGAGGTACGTGAGCCTAACATGAGGGA
GAGAGAGAGAGAGAAGTAGGGAGTCTGAGAAGAAGAGTTAGCGAGTGCAT
GTTATTTTGTGACTCCCTTTCGTCTGGGCTCGCCCATGCCAGACGAAAGC
AACGCTCGCAGTCGCAATCAGACACTGTCTGACCCCTGGACGGTATCTCT
TCCCATCCTACCTCGCTGACAGATCGGCGATTCAGGCAGGCGATGGTACG
GTAGTCCCCATCGTTGGAGATGGTTGGTACGGACGGGTGATTGGAACGAA
GGATAGAAATGAAACAGAGGTGGGAGTTACTTCATGCTGGGGCTGTTTCA
GAGCCTTAGCACGACCAAAATATTCGCAAGTACACCCACACCCATTCATA
CATTAACCCACGTGCTTGTGCCCTAATTACCACGTTCTCATCATAGGGAC
AGGAATGGCGCAAAATGAAGAAGCAAGGGCGGCAGCAGCTGCAGCGACAG
CAGCGACAGGCTGTGAGGATTAAGAAGGGGGGGAAGGAGCAGGAAGGAGA
AGTGAGGAGGGATGTCAAGAAATTGGAAATGCATGTAGGGTGTCTGGGAC
CGCAGGTGTTTGCGAAAGAAGTCCAGTCGGGCACGTCTCTCCATCATCAT
GTTGGCTGATGGACGGACTTGCCTTCTTGCACGTTTTTTAGGATGTGCGG
GGTATGACGAGGAGCTCTAAAGCGACTTATCGTATATAATATTGATTGTT
AGGCAGATGGAGGAACACATAATGCTGGGAAGTGAGGTCAAGGTAAAGAG
AAGATACTACACGAAGATAACCAAGAGTGACCAGAAAGCAGTAGAAAGGC
AGTGACCGATAATGACTTACTCATAATATGCCTACCTGCACGAAGAAAAC
AATCTCAAGACACGTAACGTGTTCGACTTATTCTTGTGAAGAAGTTCCCT
ATGGAAACACTTAAAGCAAAATGAAATAAAGGTGGTAAGCTCACCGCTCA
TTTGC

Coding sequence (CDS) from alignment at chr5:616061..619565+

>NO05G02330.7 ID=NO05G02330.7|Name=NO05G02330.7|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr5:616061..619565+ (Nannochloropsis oceanica)
ATGTCGGACAACGCGCCTGTCCCCGAGCAGAAGGAGGACGAGATGCAAGA
AGAGGAGGACATTGACGACGAGGCTTTGGAGGAGGAGGGCAGCGCAGGGG
AAGACAGCAGTGCCAACGGCGAAGAGGAGGAAGACGAAGAAGAAGAAAGA
GAGGAGAAAGAGGAGGAGGAGGAGAAGGAAGGCGACGAGGCGAGCGAGGA
ACTGCGGGCCGCGATGATTGGGGACATGCCGGAAGAAGAGAAATTACGCC
TGAAAGAGGTTGTGTGGGCCAAGAGCGCTGGCTTTGCCCATTGGCCTGGT
TTTATCTACCATCCTGCGGACGTGAAGGAAGACTTGCGCAAGAGCTGCTA
CTCTACTGCCAAGGCGAAGCATGGACCCAAGACACATCACATTTGCTTCT
ATTTTGGCTATGGCGCCAACTCTTTTGCTGCCGTACCGTTCAAAAATATC
GAGCTGTTTACCAAGGCAAATGAGGCGGTCATGATCAAGGCTTTGAAACG
GGACAAAGCCAAGATTGCGGACGCCATCAAAGAGGCGTTGGAGGAGGCGG
ACAAGCCCAAAGAGGAGCGCTCTCCGGGGCCGCCGGACACAAAGAGCATC
AAGAAGCAGGAGCAAGAGGAAAAGAAAAAGGCCAAAATGCTGGAGCGACA
GAGAAAAAATGAGGAGAAGAAGACCAAAAGAATGGAGGACCAGGGAGCTA
CAGGAAAGAAAAAAAGGAAGAAGTATGAGGAAGATGGAGATGCCGGCGAA
GAGAAGAAAAAGAAAAAGAAGCGACCAAATACATCTCTCGAGAGAGTCGG
GGGGTCTGGCGCATGGGCAACCAAGGGGCCGAAGAAGATGAAAAAAGACT
TCGAAAAAGAGAGCGAGGAAGAACGGTTCAACCGTCTGTCACGTAACCTA
CAGATTCTGCTCGACGACCAAAACCTGAACGTGCCAAAAATCTGCAGTAC
CTTGGAAAAAGTTTCGTCCATGGCTGTGACCATTGAGCAACTGACGGAGA
GCGGTACGTATGTATGGTGCTTATACTATCCCCCCGCCTCCCTTTTATCC
CCTTTGACTTCCTTCTCCCTTTCTCTACTATGCTGCCTTAATCATAAGGG
GTGGGCCAGGTGGTTAAAGGCCTCCGGAAACACGCAGAGGCCGAAATCCA
GACTAAGGCTAAGGCGGCCTTCACCCGCTGGAAGGAGAGTTTTAAGCAGG
ACATCCAGCCAGCAGCGCTCGAACAAGTCGCCGCCACAGATTCGAAGATG
GAGAAGAAAGAGAAGGAGAGCAAGACGGATGCGAAGGATGAGGGGCCGGC
CACATCGTCAATTCCTCAGCCAGCGGTGCCACCCTCTCCACAAGAGAAGG
AGGCAGCGTTTTGTGGTGAGGAAGGGCAGAGGTACGTGA

Synonyms

Publications