Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr5 genome chr5:616061..619565 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02330.2 vs.
Match: EWM28247.1 (hypothetical protein Naga_100004g157 [Nannochloropsis gaditana])
HSP 1 Score: 317.8 bits (813), Expect = 5.800e-83
Identity = 217/415 (52.29%), Postives = 284/415 (68.43%), Query Frame = 0
Query: 10 QKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEEREEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPGFIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNIELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSIKKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGEEKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNLQILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGVGQVVKGLRKHAEAEIQTKAKAAFTRWKESFKQDIQPAALEQVAATDSKMEKKEKESKTDAKDEGPATSSIPQPAVPPSPQEKEAAFCG 425
+K +E EEEDIDD+ALE+EGSAG D S +D E E E+ + EEKE LRAA++ MPE++K RLK+VVWAKSAGF+HWPGFIYHPADV++DLR+SCYS+AKAK GP+THHI FY+ YG N+F +VPFKNIE +TK ++ KA KR K KI +AI A E+A +P ERSPGP D KS++++ +EE K++ + + K T + T +K R E +A + KKKK+ + + SG A +G KK KKDFE+ESE++RFNRLSRNLQI+L+D+ LNVPKICSTLEK+S+M VTIEQLTESGVGQVVKGLRKHA++EIQ +AKAAF+RWKE+FKQ+I+ A E D +E+K +E+ +D+ + Q P + E G
Sbjct: 45 KKTEEEGEEEDIDDDALEDEGSAGGDVSGG----KDVEVEGEDDIDSEEKEA-----ALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYYNYGPNAFDSVPFKNIEPWTKESKEAFAKASKRFKDKIPEAINLAEEDAARPMAERSPGPLDLKSVRERAREEVKQSG--QGGQNALRKGTSNKQQSFLTSEKSR--INETHEALKGKKKKRLHADDEISGARPSGG-AAQGVKKWKKDFERESEKDRFNRLSRNLQIMLEDEILNVPKICSTLEKLSAMTVTIEQLTESGVGQVVKGLRKHAQSEIQVQAKAAFSRWKENFKQEIKMAP-EPAVPGDVNLERKRQEAHDPKEDKIESQKPDAQSYTPTASTNAETTSSG 444
The following BLAST results are available for this feature:
BLAST of NO05G02330.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 5.80e-83 / Id = 52.29 Sequence EWM28247.1
Match Name E-value Identity Description
EWM28247.1 5.800e-83 52.29 hypothetical protein Naga_100004g157 [Nannochlorop... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO05G02330.2 ID=NO05G02330.2|Name=NO05G02330.2|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp back to top protein sequence of NO05G02330.2
>NO05G02330.2-protein ID=NO05G02330.2-protein|Name=NO05G02330.2|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp back to top mRNA from alignment at chr5:616061..619565+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02330.2 ID=NO05G02330.2|Name=NO05G02330.2|organism=Nannochloropsis oceanica|type=mRNA|length=3505bp|location=Sequence derived from alignment at chr5:616061..619565+ (Nannochloropsis oceanica)ATGTCGGACAACGCGCCTGTCCCCGAGCAGAAGG
AGGACGAGATGCAAGAAGAGGAGGACATTGACGACGAGGCTTTGGAGGAG
GAGGGCAGCGCAGGGGAAGACAGCAGTGCCAACGGCGAAGAGGAGGAAGA
CGAAGAAGAAGAAAGAGAGGAGAAAGAGGAGGAGGAGGAGAAGGAAGGCG
ACGAGGCGAGCGAGGAACTGCGGGCCGCGATGATTGGGGACATGCCGGAA
GAAGAGAAATTACGCCTGAAAGAGGTTGTGTGGGCCAAGAGCGCTGGCTT
TGCCCATTGGCCTGGTTTTATCTACCATCCTGC GTAAGTAAGATTGGGCT
CGTTCTGTTGATGACCACCTGTTATTGTTTCCCCAATGTGACGACCTCAC
CTCCAATTTCTTCCATTCCCTCGCTCACCGACCACTTTGTTTTTCCCAGG
GACGTGAAGGAAGACTTGCGCAAGAGCTGCTACTCTACTGCCAAGGCGAA
GCATGGACCCAAGACACATCACATTTGCTTCTATTTTGGCTATGGCGCCA
ACTCTTTTG GTAATAGTCATAAATAATAATAGTAATATAATTAAGATAGT
AGTGATTGTAAGCAGACAAAGAAGAACAAGAAAAAGGAGATGAAGAAAGG
GGAAAGCGAAAGACGATGGAGTGAGTGGCCAGCCTCCTGTGTATCCTTCC
ATAGTGCTGCTTCTGTCTTGCATTTCGCACAACGGGTCTGACCTAGCATT
CATCTTCTCCCTTTCTACCTATGCTTTGTCCCTACACAGCTGCCGTACCG
TTCAAAAATATCGAGCTGTTTACCAAGGCAAATGAGGCGGTCATGATCAA
GGCTTTGAAACGGGACAAAGCCAAGATTGCGGACGCCATCAAAGAGGCGT
TGGAGGAGGCGGACAAGCCCAAAGAGGAGCGCTCTCCGGGGCCGCCGGAC
ACAAAGAGCATCAAGAAGCAGGAGCAAGAGGAAAAGAAAAAGGCCAAAAT
GCTGGAGCGACAGAGAAAAAATGAGGAGAAGAAGACCAAAAGAATGGAGG
ACCAGGGAGCTACAGGAAAGAAAAAAAGGAAGAAGTATGAGGAAGATGGA
G GTGAGTGACACGGTGTTCGAAAAAGAGCAGGCAGTCGTCGGCATCATAA
TGTAAAGTAAAGAGGGTGTCAGATTTCCTTCAGCTTCAGTCACTCATCCA
TCTTTCTCCTCAAATGGTTTGAATCACAGATGCCGGCGAAGAGAAGAAAA
AGAAAAAGAAGCGACCAAATACATCTCTCGAGAGAGTCGGGGGGTCTGGC
GCATGGGCAACCAAGGGGCCGAAGAAGATGAAAAAAGACTTCGAAAAAGA
GAGCGAGGAAGAACGGTTCAACCGTCTGTCACGTAACCTACAGATTCTGC
TCGACGACCAAAACCTGAACGTGCCAAAAATCTGCAGTACCTTG GTGAGG
AAAGGAGACAGACAACGAAAGCACCACCACAGACCATTTAACATGATTTA
TCGCGCGTCTCACATTCACCCCGTCTCTTCTCACCCTCCCTATTTAACAG
GAAAAAGTTTCGTCCATGGCTGTGACCATTGAGCAACTGACGGAGAGCG G
TACGTATGTATGGTGCTTATACTATCCCCCCGCCTCCCTTTTATCCCCTT
TGACTTCCTTCTCCCTTTCTCTACTATGCTGCCTTAATCATAAGGGGTGG
GCCAGGTGGTTAAAGGCCTCCGGAAACACGCAGAGGCCGAAATCCAGACT
AAGGCTAAGGCGGCCTTCACCCGCTGGAAGGAGAGTTTTAAGCAGGACAT
CCAGCCAGCAGCGCTCGAACAAGTCGCCGCCACAGATTCGAAGATGGAGA
AGAAAGAGAAGGAGAGCAAGACGGATGCGAAGGATGAGGGGCCGGCCACA
TCGTCAATTCCTCAGCCAGCGGTGCCACCCTCTCCACAAGAGAAGGAGGC
AGCGTTTTGTGGTGAGGAAGGGCAGAG GTACGTGAGCCTAACATGAGGGA
GAGAGAGAGAGAGAAGTAGGGAGTCTGAGAAGAAGAGTTAGCGAGTGCAT
GTTATTTTGTGACTCCCTTTCGTCTGGGCTCGCCCATGCCAGACGAAAGC
AACGCTCGCAGTCGCAATCAGACACTGTCTGACCCCTGGACGGTATCTCT
TCCCATCCTACCTCGCTGACAGATCGGCGATTCAGGCAGGCGATGGTACG
GTAGTCCCCATCGTTGGAGATG GTTGGTACGGACGGGTGATTGGAACGAA
GGATAGAAATGAAACAGAGGTGGGAGTTACTTCATGCTGGGGCTGTTTCA
GAGCCTTAGCACGACCAAAATATTCGCAAGTACACCCACACCCATTCATA
CATTAACCCACGTGCTTGTGCCCTAATTACCACGTTCTCATCATAGGGAC
AGGAATGGCGCAAAATGAAGAAGCAAGGGCGGCAGCAGCTGCAGCGACAG
CAGCGACAGGCTGTGAGGATTAA back to top Coding sequence (CDS) from alignment at chr5:616061..619565+
>NO05G02330.2 ID=NO05G02330.2|Name=NO05G02330.2|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr5:616061..619565+ (Nannochloropsis oceanica) back to top