NO04G03900, NO04G03900 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03900 vs. NCBI_GenBank
Match: EWM28769.1 (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana]) HSP 1 Score: 165.6 bits (418), Expect = 1.800e-37 Identity = 95/143 (66.43%), Postives = 112/143 (78.32%), Query Frame = 0 Query: 22 RPHQSHPTASLP---AAAMAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFGGGRAGGGAGAMAQRQRLLETN 162 RP Q + S P + AM +IFESYEDEFR+LA DCQK LS+LLTYET+ DK +LL+ A+PQV QLEG+IKQMK+EVRS D TKAALS KVQ+YE+ L GVK+DLG+AREREEKDAL G AGGG +M QRQRLLET+ Sbjct: 22 RPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG---AGGGV-SMVQRQRLLETS 160
BLAST of NO04G03900 vs. NCBI_GenBank
Match: EWM28770.1 (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana]) HSP 1 Score: 165.6 bits (418), Expect = 1.800e-37 Identity = 95/143 (66.43%), Postives = 112/143 (78.32%), Query Frame = 0 Query: 22 RPHQSHPTASLP---AAAMAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFGGGRAGGGAGAMAQRQRLLETN 162 RP Q + S P + AM +IFESYEDEFR+LA DCQK LS+LLTYET+ DK +LL+ A+PQV QLEG+IKQMK+EVRS D TKAALS KVQ+YE+ L GVK+DLG+AREREEKDAL G AGGG +M QRQRLLET+ Sbjct: 22 RPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG---AGGGV-SMVQRQRLLETS 160
BLAST of NO04G03900 vs. NCBI_GenBank
Match: POM69007.1 (Vesicle transport through interaction with t-SNAREs 1 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 87.0 bits (214), Expect = 8.000e-14 Identity = 51/125 (40.80%), Postives = 77/125 (61.60%), Query Frame = 0 Query: 37 MAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFGGGRAGGGAGAMAQRQRLLETN 162 M IF+ Y++E+R+L SD K LS++ +YE +DK+ A + + Q +I+QM++EVRS D AT+ LS KV Y+K+LA + +D K RE+EE++ LF G R G A A + + TN Sbjct: 1 MTTIFDGYDEEYRTLTSDISKKLSEVASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDTATRRELSKKVDQYKKSLASLSADQKKIREKEEREGLF-GDRDGNAASAEHRGRMAAATN 124
BLAST of NO04G03900 vs. NCBI_GenBank
Match: ETI49499.1 (hypothetical protein F443_06657 [Phytophthora parasitica P1569] >ETK89383.1 hypothetical protein L915_06531 [Phytophthora parasitica] >ETL42789.1 hypothetical protein L916_06472 [Phytophthora parasitica] >ETL95960.1 hypothetical protein L917_06339 [Phytophthora parasitica] >ETM49149.1 hypothetical protein L914_06445 [Phytophthora parasitica] >ETO78221.1 hypothetical protein F444_06728 [Phytophthora parasitica P1976] >ETP19258.1 hypothetical protein F441_06664 [Phytophthora parasitica CJ01A1] >ETP47204.1 hypothetical protein F442_06697 [Phytophthora parasitica P10297]) HSP 1 Score: 85.9 bits (211), Expect = 1.800e-13 Identity = 49/121 (40.50%), Postives = 75/121 (61.98%), Query Frame = 0 Query: 37 MAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFGGGRAGGGAGAMAQRQRL 158 M IF+ Y++E+R+L SD K LS++ +YE +DK+ A + + Q +I+QM++EVRS D AT+ LS KV Y+K+LA + +D K RE+EE++ LFG G A + R R+ Sbjct: 1 MTTIFDGYDEEYRTLTSDISKKLSEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGD--RDGNAASAEHRNRM 119
BLAST of NO04G03900 vs. NCBI_GenBank
Match: XP_008892242.1 (hypothetical protein PPTG_02754 [Phytophthora parasitica INRA-310] >ETN23038.1 hypothetical protein PPTG_02754 [Phytophthora parasitica INRA-310]) HSP 1 Score: 85.9 bits (211), Expect = 1.800e-13 Identity = 49/121 (40.50%), Postives = 75/121 (61.98%), Query Frame = 0 Query: 37 MAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFGGGRAGGGAGAMAQRQRL 158 M IF+ Y++E+R+L SD K LS++ +YE +DK+ A + + Q +I+QM++EVRS D AT+ LS KV Y+K+LA + +D K RE+EE++ LFG G A + R R+ Sbjct: 1 MTTIFDGYDEEYRTLTSDISKKLSEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGD--RDGNAASAEHRNRM 119
BLAST of NO04G03900 vs. NCBI_GenBank
Match: XP_002999218.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY69364.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 85.9 bits (211), Expect = 1.800e-13 Identity = 49/121 (40.50%), Postives = 76/121 (62.81%), Query Frame = 0 Query: 37 MAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFGGGRAGGGAGAMAQRQRL 158 M IF+ Y++E+R+L SD K LS++ +YE +DK+ A + + Q +I+QM++EVRS D AT+ LS KV Y+K+LA + +D K RE+EE++ LFG G A ++ R R+ Sbjct: 1 MTTIFDGYDEEYRTLTSDISKKLSEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGD--RDGNAASVEHRGRM 119
BLAST of NO04G03900 vs. NCBI_GenBank
Match: CCI49442.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 85.5 bits (210), Expect = 2.300e-13 Identity = 46/104 (44.23%), Postives = 66/104 (63.46%), Query Frame = 0 Query: 37 MAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFG 141 M IF+ Y++E+R+LASD K +SD+ TYE DK+ + L + Q +I+QM++E RS D AT+ LS KV+ Y K+L + D K REREE+D +FG Sbjct: 1 MTSIFDGYDEEYRALASDISKKISDVATYEQEPDKKKSSLLHIGDLLKQGNQLIQQMELEARSLDVATRRELSKKVEQYRKSLGSLNEDFKKIREREERDGVFG 104
BLAST of NO04G03900 vs. NCBI_GenBank
Match: CCI49443.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 85.5 bits (210), Expect = 2.300e-13 Identity = 46/104 (44.23%), Postives = 66/104 (63.46%), Query Frame = 0 Query: 37 MAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFG 141 M IF+ Y++E+R+LASD K +SD+ TYE DK+ + L + Q +I+QM++E RS D AT+ LS KV+ Y K+L + D K REREE+D +FG Sbjct: 1 MTSIFDGYDEEYRALASDISKKISDVATYEQEPDKKKSSLLHIGDLLKQGNQLIQQMELEARSLDVATRRELSKKVEQYRKSLGSLNEDFKKIREREERDGVFG 104
BLAST of NO04G03900 vs. NCBI_GenBank
Match: CCI49444.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 85.5 bits (210), Expect = 2.300e-13 Identity = 46/104 (44.23%), Postives = 66/104 (63.46%), Query Frame = 0 Query: 37 MAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFG 141 M IF+ Y++E+R+LASD K +SD+ TYE DK+ + L + Q +I+QM++E RS D AT+ LS KV+ Y K+L + D K REREE+D +FG Sbjct: 1 MTSIFDGYDEEYRALASDISKKISDVATYEQEPDKKKSSLLHIGDLLKQGNQLIQQMELEARSLDVATRRELSKKVEQYRKSLGSLNEDFKKIREREERDGVFG 104
BLAST of NO04G03900 vs. NCBI_GenBank
Match: OWZ18705.1 (hypothetical protein PHMEG_0007154 [Phytophthora megakarya]) HSP 1 Score: 84.7 bits (208), Expect = 4.000e-13 Identity = 49/121 (40.50%), Postives = 75/121 (61.98%), Query Frame = 0 Query: 37 MAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFGGGRAGGGAGAMAQRQRL 158 M IF+ Y++E+R+L SD K LS++ +YE +DK+ A + + Q +I+QM++EVRS D AT+ LS KV Y+K+LA + +D K RE+EE++ LFG G A + R R+ Sbjct: 1 MTTIFDGYDEEYRTLTSDISKKLSEVASYEDQKDKKKASIIHVGDLLTQATQLIQQMELEVRSLDTATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGD--RDGNAASTEYRSRM 119 The following BLAST results are available for this feature:
BLAST of NO04G03900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
The following polypeptide feature(s) derives from this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03900 ID=NO04G03900|Name=NO04G03900|organism=Nannochloropsis oceanica|type=gene|length=3214bpback to top protein sequence of NO04G03900.4 >NO04G03900.4-protein ID=NO04G03900.4-protein|Name=NO04G03900.4|organism=Nannochloropsis oceanica|type=polypeptide|length=219bpback to top protein sequence of NO04G03900.3 >NO04G03900.3-protein ID=NO04G03900.3-protein|Name=NO04G03900.3|organism=Nannochloropsis oceanica|type=polypeptide|length=193bpback to top protein sequence of NO04G03900.2 >NO04G03900.2-protein ID=NO04G03900.2-protein|Name=NO04G03900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=255bpback to top protein sequence of NO04G03900.1 >NO04G03900.1-protein ID=NO04G03900.1-protein|Name=NO04G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bpback to top Synonyms
Publications
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