NO04G03900.1, NO04G03900.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G03900.1
Unique Name	NO04G03900.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1989
Alignment location	chr4:1050433..1053646 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1050433..1053646 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO04G03900.1 vs.
Match: EWM28770.1 (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana])

HSP 1 Score: 268.5 bits (685), Expect = 1.900e-68
Identity = 155/228 (67.98%), Postives = 183/228 (80.26%), Query Frame = 0

Query:    4 SSFHHQQLREEEQESLLLRPHQSHPTASLP---AAAMAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFGGGRAGGGAGAMAQRQRLLETNERLANQNRTIENARKVMAETEQVGIQIGEELDSNREKIQNIRGKVSEVQGLAGQAKKLVKDMGKRWF 229
            S+F  Q+  EE++E LL RP Q   + S P   + AM +IFESYEDEFR+LA DCQK LS+LLTYET+ DK  +LL+ A+PQV QLEG+IKQMK+EVRS D  TKAALS KVQ+YE+ L GVK+DLG+AREREEKDAL G   AGGG  +M QRQRLLET+ERLA+QNRTI+NARKVMAETEQVGI IGEEL+SNREKIQ+IRGKV E QG+   A+KLVK+M  RWF
Sbjct:    6 SNFREQE--EEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG---AGGGV-SMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSRWF 227

The following BLAST results are available for this feature:

BLAST of NO04G03900.1 vs.

BLAST of NO04G03900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28770.1	1.900e-68	67.98	vesicle transport through interaction with t-snare...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G03900	NO04G03900	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G03900.1	NO04G03900.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G03900.1.cds1	NO04G03900.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G03900.1.cds2	NO04G03900.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G03900.1.cds3	NO04G03900.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G03900.1.cds4	NO04G03900.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G03900.1.cds5	NO04G03900.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1050433..1053646-
coding sequence from alignment at chr4:1050433..1053646-

mRNA sequence

>NO04G03900.1 ID=NO04G03900.1|Name=NO04G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp
TGTTTCGCTCCTGGGCCCTAATCTACTCTGTGGACGGCCGATACGAATGA
CGAACAGTACGTACGCCAAAACCGTTTCGACTCTTTTTACAATCCCCCTC
TGCTCTGGTTGCCCACACCACCGCTCTCACTCAAATTCAGTCCCACTCCC
ACGCAATTCTCGCACAGATAAGTTAAGCTGCTCGCGGTTTTGTTCGGGAG
GAAGAGGGCATGGAGCAAGCGAGAGCGAGAAGTGAGGCGAGGGAGAGAGA
CGTCATGGCGCCACGGGACTTGGCTTTGCGCTGGTCATACGCATTGTTCA
AGGGCTCTTGATGTCATGGAAGATGCAGACATGCGGAAAGCAGGGTGTGC
ACGCGATTTGGGATATGAATGTGTGCAGGGAGAGTGAAAATCACGCGACT
GGCAGGCTAGATTTCTCGACGCACCCCCACCCGCTGTACCACCAGTTTCC
AGACTTGCTCATCTGCCTTCTTCAGGCTATGATGAGGCATCGCTGCATCT
TGCGCTATACGTTTCCACTCCGCTCCCTCAACATCCACGCATGCAACCCA
ACCATACCACAGAAGCAAAAGACAAGCCCACCATGCCGGCCGCGACCACC
TCTTTGTGAGCGCGTATGTCGTCGTCGTCGTTTCATCACCAGCAACTGAG
GGAGGAAGAGCAAGAATCCTTGCTCCTACGCCCGCATCAATCCCACCCCA
CGGCCTCCCTTCCTGCCGCCGCCATGGCTGAAATCTTTGAATCCTACGAG
GACGAGTTCCGCTCCCTCGCCTCAGACTGCCAGAAGAATCTCTCCGACCT
GCTCACTTACGAGACGAACCGCGACAAAAGGATGGCCCTCCTCCAACTAG
CCACCCCTCAAGTCGCCCAACTGGAAGGTATCATCAAGCAAATGAAGGTG
GAGGTGCGTTCGCAAGACCCCGCCACCAAAGCTGCTCTCAGCATCAAGGT
TCAATCCTATGAAAAGGCCTTGGCAGGGGTGAAGAGTGACTTGGGGAAGG
CCCGCGAGAGGGAAGAAAAAGACGCCCTGTTTGGGGGGGGGCGTGCTGGC
GGAGGGGCAGGGGCGATGGCGCAACGCCAGAGGTTGTTGGAGACAAATGA
GCGGCTGGCGAATCAAAATCGAACGATCGAGAATGCAAGGAAGGTGATGG
CAGAAACGGAGCAAGTTGGCATTCAGATCGGGGAGGAGCTGGATTCAAAC
AGGGAGAAGATTCAGAACATTCGCGGCAAGGTGAGCGAAGTGCAGGGCCT
AGCCGGTCAGGCGAAGAAATTAGTCAAGGACATGGGAAAGCGATGGTTCT
AACCCGCTCACGCACTATACGTATATATATATATATATATATATTATTCC
TCCTCTGAAGAGCCGTGCTGCTGCTGGCGGATGGATGGGAAGGGAGGAGG
GCAAGGGCGCGACGATGTCATTTTCGCCTCCCCCCTCTCCTTCATCGTTT
CCCAAGCTCACTTATGCGTGTAAAATTTTGTGCATATACTGTGCCTGTGC
GTTTTTTGATTGCACAAGCGAATCGTACATGACCATCTTCAACCCACCGT
CCGTCCTTCCTCCTCTTCCTCTCCCTCTCCTTCTACCTCTTCATCCATCC
CTTCTTGAATCCAGGTCTCGGAGGTGGGTGGACTAACCAACACAGCCCGG
CGACTCATCTCCAATATTAGCCGGCGAGAAACTCAGCAGAAAATGCTATT
ATGGGGCGTGGCGGGTTCCTTGTTTATCGCTATTATCCTGATCATTTATT
ACTCGTCACGGTAGAGAAGCAGAGGGGAAGGGAAGGAGGATCGAGAGAGG
GTGAGGCCTTACATGATCGTATACCTTAATCTTTTCAATAATTCAGGTGT
ATTCTCGTGACCTGCATGTAATACAAAAGCAACTACAGGAGGGGTTGTAC
AAAAGAAAGATAAATTAATGAGATTGCGCGACAGGACACGAAATGAATTT
GTCGCAGGGACGAGGAGAGAGGGAGTAAGAAATTGCGGA

protein sequence of NO04G03900.1

>NO04G03900.1-protein ID=NO04G03900.1-protein|Name=NO04G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MSSSSFHHQQLREEEQESLLLRPHQSHPTASLPAAAMAEIFESYEDEFRS
LASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQ
DPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFGGGRAGGGAGA
MAQRQRLLETNERLANQNRTIENARKVMAETEQVGIQIGEELDSNREKIQ
NIRGKVSEVQGLAGQAKKLVKDMGKRWF*

mRNA from alignment at chr4:1050433..1053646-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G03900.1 ID=NO04G03900.1|Name=NO04G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=3214bp|location=Sequence derived from alignment at chr4:1050433..1053646- (Nannochloropsis oceanica)
TGTTTCGCTCCTGGGCCCTAATCTACTCTGTGGACGGCCGATACGAATGA
CGAACAGTACGTACGCCAAAACCGTTTCGACTCTTTTTACAATCCCCCTC
TGCTCTGGTTGCCCACACCACCGCTCTCACTCAAATTCAGTCCCACTCCC
ACGCAATTCTCGCACAGATAAGTTAAGCTGCTCGCGGTTTTGTTCGGGAG
GAAGAGGGCATGGAGCAAGCGAGAGCGAGAAGTGAGGCGAGGGAGAGAGA
CGTCATGGCGCCACGGGACTTGGCTTTGCGCTGGTCATACGCATTGTTCA
AGGGCTCTTGATGTCATGGAAGATGCAGACATGCGGAAAGCAGGGTGTGC
ACGCGATTTGGGATATGAATGTGTGCAGGGAGAGTGAAAATCACGCGACT
GGCAGGCTAGATTTCTCGACGCACCCCCACCCGCTGTACCACCAGTTTCC
AGACTTGCTCATCTGCCTTCTTCAGGCTATGATGAGGCATCGCTGCATCT
TGCGCTATACGTTTCCACTCCGCTCCCTCAACATCCACGCATGCAACCCA
ACCATACCACAGAAGCAAAAGACAAGCCCACCATGCCGGCCGCGACCACC
TCTTTGTGAGCGCGTATGTCGTCGTCGTCGTTTCATCACCAGCAACTGAG
GGAGGAAGAGCAAGAATCCTTGGTAGCTTGACAAGGGGAAGGGAGGGAGG
AGAGGGAAGGGAGAGGGAAATGACGATTAATCTCTGGACCCTCCTTTGGT
CCTGCGCCCGTAACGAAGAAATGGATTAGTTTTGGAGGAGACGAACATGC
GTCGCCCTCTTTGCCGCTGCGTCTCGTGCCCCTTTTTTTACATGACACAA
GGGCATGCAGAGTGTGAATGACCATGAGGTGGCGAATCAGCGACTCGCTA
TGCTTGTCATCCACTCCCGGATTAGTCAGCGCCTTTCCCTTCATGGCGTA
TGGACAGACGTGTCGATGATTGTTACGCGTGGAAGTGAACATGATTTGAT
GGAGAACAGAGATCATCCCAGCCGCCTCATGTCGTCACACGCATGACGTG
CATCCTTTCACTCGTGGTTGAAGGACGCATGCAAAACTGCTTGACCTGTT
TCAACTCTTATTAGAATTGCGTAGAAGATTAGAAGAGCCTTTGCGTTAAT
GCCACGGTGCATGATGGATGACGTGCGAATACTCGTGGCCATCGTCTTGT
ATGTATGCCTTGGGCGATCCTTCGATTCCATCGCACTTATAAATCCCTCC
CTCGCCTCTCTCCCTCCCTTCACCCGTTTTTACCCGCCCATAGCTCCTAC
GCCCGCATCAATCCCACCCCACGGCCTCCCTTCCTGCCGCCGCCATGGCT
GAAATCTTTGAATCCTACGAGGACGAGTTCCGCTCCCTCGCCTCAGACTG
CCAGAAGAATCTCTCCGACCTGCTCACTTACGAGACGAACCGCGACAAAA
GGATGGCCCTCCTCCAACTAGCCACCCCTCAAGGTGAGTAGACACAGCAG
CAGGCATATGGCGTACTGGATGGAAGTGGGGCAGTAGAACAGAATTTTTC
ATGTATGGAGGGGTGAACATGTGTACCCTTGTACCCTCCCTATCTCCTTC
TCTCCCTCCTTTCTTTCACGTCGTATTGTCGCTGAAAAAAGGATATAAGA
TTGTGGGCCTTGACTTCATCTGCCCTACTGTCTCTTTGATTCCCGTTCCT
TCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGTCGCCCAACTGG
AAGGTATCATCAAGCAAATGAAGGTGGAGGTGCGTTCGCAAGACCCCGCC
ACCAAAGCTGCTCTCAGCATCAAGGTTCAATCCTATGAAAAGGCCTTGGC
AGGGGTGAAGAGTGACTTGGGGAAGGCCCGCGAGAGGGAAGAAAAAGACG
CCCTGTTTGGGGGGGGGCGTGCTGGCGGAGGGGCAGGGGCGATGGCGCAA
CGCCAGAGGTTGTTGGAGACAAATGAGCGGCTGGCGAATCAAAATCGAAC
GATCGAGAATGCAAGGAAGGTGATGGCAGAAACGGAGCAAGTTGGTAGGT
GAGAGAGGGAGGGAGGGAGAGGGAAAGCGGAAAAGAGGGAAGGACGATAG
AAATTTAGATTTCAATGGCGGTAGCAAGACACGAGCATCATTCAATTATT
ATCATATCGTTATGTTTTTTCCGACCATCCAGGCATTCAGATCGGGGAGG
AGCTGGATTCAAACAGGGAGAAGATTCAGAACATTCGCGGCAAGGTGAGA
TGAGAGATACGCGGAGATGTGTCAGTCAGGGGGGGGGGCATGGCCCATGT
ATTTGGTTGGCGTGCATCCCTTCCCTCTTCCGTCGCGTCTGGAATGCGAG
CAGGAATGTATGACCTCACTCCACAGCAACACGATTTCCCACCTTTTCTC
CTCCTTCCCTCCCTCCTTTCCTCCTTCCCTCCCTCCCTTCATGTTTTTTT
CACAGGTGAGCGAAGTGCAGGGCCTAGCCGGTCAGGCGAAGAAATTAGTC
AAGGACATGGGAAAGCGATGGTTCTAACCCGCTCACGCACTATACGTATA
TATATATATATATATATATTATTCCTCCTCTGAAGAGCCGTGCTGCTGCT
GGCGGATGGATGGGAAGGGAGGAGGGCAAGGGCGCGACGATGTCATTTTC
GCCTCCCCCCTCTCCTTCATCGTTTCCCAAGCTCACTTATGCGTGTAAAA
TTTTGTGCATATACTGTGCCTGTGCGTTTTTTGATTGCACAAGCGAATCG
TACATGACCATCTTCAACCCACCGTCCGTCCTTCCTCCTCTTCCTCTCCC
TCTCCTTCTACCTCTTCATCCATCCCTTCTTGAATCCAGGTCTCGGAGGT
GGGTGGACTAACCAACACAGCCCGGCGACTCATCTCCAATATTAGCCGGC
GAGAAACTCAGCAGAAAATGCTATTATGGGGCGTGGCGGGTTCCTTGTTT
ATCGCTATTATCCTGATCATTTATTACTCGTCACGGTAGAGAAGCAGAGG
GGAAGGGAAGGAGGATCGAGAGAGGGTGAGGCCTTACATGATCGTATACC
TTAATCTTTTCAATAATTCAGGTGTATTCTCGTGACCTGCATGTAATACA
AAAGCAACTACAGGAGGGGTTGTACAAAAGAAAGATAAATTAATGAGATT
GCGCGACAGGACACGAAATGAATTTGTCGCAGGGACGAGGAGAGAGGGAG
TAAGAAATTGCGGA

Coding sequence (CDS) from alignment at chr4:1050433..1053646-

>NO04G03900.1 ID=NO04G03900.1|Name=NO04G03900.1|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at chr4:1050433..1053646- (Nannochloropsis oceanica)
ATGTCGTCGTCGTCGTTTCATCACCAGCAACTGAGGGAGGAAGAGCAAGA
ATCCTTGCTCCTACGCCCGCATCAATCCCACCCCACGGCCTCCCTTCCTG
CCGCCGCCATGGCTGAAATCTTTGAATCCTACGAGGACGAGTTCCGCTCC
CTCGCCTCAGACTGCCAGAAGAATCTCTCCGACCTGCTCACTTACGAGAC
GAACCGCGACAAAAGGATGGCCCTCCTCCAACTAGCCACCCCTCAAGTCG
CCCAACTGGAAGGTATCATCAAGCAAATGAAGGTGGAGGTGCGTTCGCAA
GACCCCGCCACCAAAGCTGCTCTCAGCATCAAGGTTCAATCCTATGAAAA
GGCCTTGGCAGGGGTGAAGAGTGACTTGGGGAAGGCCCGCGAGAGGGAAG
AAAAAGACGCCCTGTTTGGGGGGGGGCGTGCTGGCGGAGGGGCAGGGGCG
ATGGCGCAACGCCAGAGGTTGTTGGAGACAAATGAGCGGCTGGCGAATCA
AAATCGAACGATCGAGAATGCAAGGAAGGTGATGGCAGAAACGGAGCAAG
TTGGCATTCAGATCGGGGAGGAGCTGGATTCAAACAGGGAGAAGATTCAG
AACATTCGCGGCAAGGTGAGCGAAGTGCAGGGCCTAGCCGGTCAGGCGAA
GAAATTAGTCAAGGACATGGGAAAGCGATGGTTCTAA

Synonyms

Publications