NO04G03840, NO04G03840 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03840 vs. NCBI_GenBank
Match: EWM28829.1 (hypothetical protein Naga_100002g118 [Nannochloropsis gaditana]) HSP 1 Score: 1146.7 bits (2965), Expect = 0.000e+0 Identity = 574/881 (65.15%), Postives = 668/881 (75.82%), Query Frame = 0 Query: 1 MSVVPLAGGRPQTSHVDQDGMKYFSAVLGSSTEDMRVSLTMFSGSAELYVADRVDMAHLPLPGDRTSWKYTSKNNWQGRNQVVIPGPHANRTQFAIGVRGLEDASAFSVLASFSQSPVFLQEGVPVQQSLSPGRMAWFVYRIAKAEDVRVAVTALSGDPDVLASTTHSRPACVR---SQEGTDEEGVASFACGNYTWIAQTYQNDELVILHDLPCAEVGNTNVNASACSPRMLAPGQLLYIGVFAYDDKEDTTFTLSLTTGGGHTNLLPGHPQHGNTRLGVICQTRRADGTCGTSSV------SKAEVAYYRFLVPPPSALFGEDEAAHVSVILEPVCNATTFTWKGMEARCAIGCACDPLELYIWSCAESECDPEDEYPHPGHYQMKQTAAQSYSTVFLAHDKYNPNNGFCNPKTAGQSCLYFISVYHAE---VEDGRQGGSFTITASTNKDVTILPTRRNPASPDGLVSSSLDTVDASAGEVKGSKRYQMYTTKGGDVQLTLEACAGEMSLAVCDGSCRALYPTQGDYRFFADTTQICTREGCRPIPGGRGLPRIALDHVMEDSFFLTVNGTGKYMLKVATTTEGHAIAPVLAPPSSGSSAPLVKHIDYNRVTLSWPAATLKVPGKKRGRGEGEGVVPQGVKYKVFAFPEPILWDDNGREGGVERNPAEKPVLHTVCGVEHYAAVSQAGGEGEEGNERGGGMKTYVGEVPAGATSHTVTDLVPGTEYRFVVLASCDAVCLRASSLMPEGNFLPCGGPEPCQNQHCLYAMTRATAGGGGWIGG-GEGKLRV-SALLVVLAVLTMVGLMAQMAKRRTAGAEVGRREXXXXXXGGLMVRRPQQVDYEMTISPTGTASVTRGANALASPREMREGGRGGERYE 868 MS+VPLAGGRPQ HVD+D M+YFSAVLGSSTE +RVSLT+FSG AE++VADRVD + LPLP D TSW+Y+S++N +GRN+VVIPGPH NRT+FAIGVRGLEDAS FS+LASFSQS +FLQEGVPVQQSL+PGRMAWFV+R+A+ EDVRVAVTALSGDPD+LAST H RPACVR S EG E G AS+ CGNYTW+AQTYQ+DELVILHDLPC EVGNT VN SAC+P ML+PG LY+GVFAYD+ DTTFTL+LTTG GHT LLPG PQHGNTRLG IC+ RRADG+C TS+ SKA VAYYRFLV PPSALFGEDEAAHVSV+LEPVCNATTFTW+G+E C +GC CDPLELY+WSCAES+C EDEYPHP HYQ + AAQ+Y+TVFLAHDKYNPNNGFCNP+TAG+ CLYFI+VYH E V +GG FTITASTN DVTILPTRR+P PDGLVSS+L+ VD + G GSKRYQMY +GGDVQL LE C G MSLAVCDGSC LYPT+ DYR+ AD+TQ CTREGCRP+PG + +PRI + V EDS F+ VNGTG Y L+VA TTEGHAIAPVLA P++GS AP +KH+ + VT++WPAATL VPGKK GRG G G+ GV+YKVFAFPE +L + +PAE PVLHTVCGVE YA A G+ E G +YVG+V G T+HTVT L PGTEY F+V+ SCD CLRA+S G LPCGG PCQ+Q LY TRAT G W+GG G G + +L+V+ +L +VG + + G G G V RPQQVDYEMT+SPTG+ + + N ASPR+ R GRG RYE Sbjct: 1490 MSIVPLAGGRPQVGHVDRDNMQYFSAVLGSSTEGLRVSLTLFSGHAEIFVADRVDPSRLPLPEDPTSWRYSSRSNSRGRNEVVIPGPHRNRTRFAIGVRGLEDASTFSILASFSQSLIFLQEGVPVQQSLAPGRMAWFVHRLARKEDVRVAVTALSGDPDILASTLHPRPACVRPPGSSEG--ETGTASYVCGNYTWMAQTYQSDELVILHDLPCEEVGNTRVNTSACAPYMLSPGHSLYVGVFAYDNTADTTFTLTLTTGSGHTKLLPGRPQHGNTRLGAICKRRRADGSCDTSTAEPPADSSKAYVAYYRFLVSPPSALFGEDEAAHVSVVLEPVCNATTFTWEGLET-CRVGCPCDPLELYVWSCAESQCTSEDEYPHPDHYQTRHIAAQAYNTVFLAHDKYNPNNGFCNPQTAGEPCLYFITVYHPEGGGVSRAVEGGGFTITASTNHDVTILPTRRHPPPPDGLVSSNLEAVDITVGGRMGSKRYQMYAQQGGDVQLVLEPCTGSMSLAVCDGSCVGLYPTEHDYRYLADSTQTCTREGCRPLPGAQAMPRIDIKGVAEDSLFVAVNGTGVYSLRVAMTTEGHAIAPVLA-PATGSPAPSLKHVHRDSVTVTWPAATLTVPGKKSGRGGGRGMQAHGVRYKVFAFPEAVL-----QAFRQSASPAEAPVLHTVCGVERYA----ARGQTAETTGEGPLPTSYVGDVAEGMTTHTVTGLAPGTEYLFMVVGSCDQACLRANSKSAGGEILPCGGAVPCQDQRSLYPPTRATTASGAWVGGVGSGARELWRWVLLVIGILAIVGFLVRRKILHRGGGSGGVLGRNGLREGRSRVGRPQQVDYEMTVSPTGSCAAGQPRNEFASPRDGRGAGRG--RYE 2355
BLAST of NO04G03840 vs. NCBI_GenBank
Match: CBJ29308.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 213.8 bits (543), Expect = 2.200e-51 Identity = 229/846 (27.07%), Postives = 356/846 (42.08%), Query Frame = 0 Query: 6 LAGGRPQTSHVDQDGMKYFSAVLGSSTEDMRVSLTMFSGSAELYVADR------VDMAHLPLPGDRTSWKYTSKNNWQGRNQVVIPGPHANRTQFAIGVRGLEDASAFSVLASFSQSPVFLQEGVPVQQSLSPGRMAWFVYRIAKAE-DVRVAVTALSGDPDVLA--STTHSRPACVRSQEGTDEEGVASFA--CGNYTWIAQTYQNDELVILHDLPC--------------AEVGNTNVN------------------ASACSPRMLAPGQLLYIGVFAYDDKEDTTFTLSLTTGGGHTNLLPGHPQHGNTRLGVIC--QTRRADGTCG----TSSVSKAEVAYYRFLVPPPSALFGEDEAAHVSVILEPVCNATTFTWKGMEARCAIGCACDPLELYIWSCAESECDPEDEYPHPGHYQMKQTAAQSYSTVFLAHDKYNPNNG-FCNPKTAGQSCLYFISVYHAEVEDGRQGGSFTITASTNKDVT-ILPTRRNPASPDGLVSSSLDTVDASAGEVKGSKRYQMYTTKGGDVQLTLEACAGEMSLAVCDGSCRALYPTQ--GD---YRFFADTTQICTRE----GCRPIPGG-----------RGLPRIALDHVMEDSFFLTVN-------GTGKYMLKV-ATTTEGHAIAPVLAP---PSSGSSAPLVKHIDYNRVTLSWPAATLKVPGKKRGRGEGEGVVPQ-GV--KYKVFAFPEPILWDDNGREGGVERNPAEKPVLHTVCGVEHYAAVSQAGGEGEEGNERGGGMKTYVGEV--PAGATSHTVTDLVPGTEYRFVVLASCDAVCLRASSLMPEGNFLPCGGPEPCQNQHCLYAMTRATA 765 L GRPQ V +GM+Y+ S T + V+LT G +LYV R D A + P DR ++++TS+ Q ++ +V+ G + IGV G+ D + FSV+ +FSQ LQEGVP + +L G F + + + D+++ VT + GDP + A T S A S E D EG A C +TW + + I H PC + GN ++ + C+P G ++++ V A D +F++ + G H L+ G PQH T V C + G C TSSV + + ++ +A G S+ L P C + CA GC P ++Y+ SC E +C PED +P G + + + +VF+A + + +G FC P G +C+Y+I+V A ED T TA ++ ++P + + PDG++ + + V S G K Y++ + D Q+++E+C GE+ L VCD +C LYP++ G+ Y + +D ICT C+P+PG G P ++F+ V +++L+V EG I+P L+ PS ++ V + T+ W ATL +P K GR E G+ Y+V+A P R E P HT CG+E + + + +VG P T T+ L Y FVV A+CD VCL A M L PC+ Q+ ++ A Sbjct: 518 LVHGRPQAGKVAANGMRYYLLRPESDTTKLTVTLTKSIGEGDLYVVRRPAGGEGEDTAVID-PHDRATYRWTSRG--QAQDTIVLDGDGGTADPYLIGVSGVTDVT-FSVVGTFSQGVSILQEGVPQRHTLEAGSSMAFGFLVDQDNVDLQLTVTPIRGDPALYAGMGATPSCAAPEESGESGDAEGGGEDAGVCSGWTWSCTRGRRRNIPISHLHPCNVLEERQQGDSTEDGDGGNDAIDDADEVDNGEGVPTSGVEVSDKCAPSSFGVG-MMFMTVVAQGGM-DASFSVMASLVGKHVTLVTGVPQHAVTSPMVPCGEAKQTEQGPCSAEYETSSVMQEALFVFKVGAGSVAATTG------FSLSLVPECAPGSCG----GPTCASGCPRRPAKVYVKSCPEDKCLPEDRFPSQGSRDKEFEVSSADGSVFIADGRGSAGDGVFCVPSKHG-ACVYYIAV-TAGGED-EPAMQLTATADVPTGISLVVPCIGDSSLPDGMIVTPANRVPLS-----GMKLYELCSKGEVDFQVSVESCRGEVELFVCDDTCPGLYPSKKPGERMVYTYMSDGEMICTEHQQDTHCQPLPGSDRNKEASVTVEAGDPAEGTTSTRSSTYFVGVGMRPGQRAEDQEHLLRVNVMGEEGVPISPSLSAKFLPSGSDASRAV--VGGREATVEWGGATLHMP-KLSGRHPYEAEDRDCGIYCSYEVYAVP--------------TRLKGEFP--HTACGLESLS-----------NRLKVDVVYKFVGNAKNPGEVTQTTLQGLRDEVHYVFVV-ATCDFVCLEALLRMQCSRSLG-SAHSPCKPQNVVFPAAHLVA 1307 The following BLAST results are available for this feature:
BLAST of NO04G03840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 2
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03840 ID=NO04G03840|Name=NO04G03840|organism=Nannochloropsis oceanica|type=gene|length=2655bpback to top protein sequence of NO04G03840.1 >NO04G03840.1-protein ID=NO04G03840.1-protein|Name=NO04G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=885bpback to top Synonyms
Publications
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