NO03G01140, NO03G01140 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G01140 vs. NCBI_GenBank
Match: EWM29592.1 (stomatal cytokinesis defective scd1 protein [Nannochloropsis gaditana]) HSP 1 Score: 1456.8 bits (3770), Expect = 0.000e+0 Identity = 805/1334 (60.34%), Postives = 926/1334 (69.42%), Query Frame = 0 Query: 1 MGEKYIRTSLSFEHLIDDPGWMPYFLDFLSGHDQSHLLLFWLEVEVFELAAGGGPSLVTQATRIYESYLGPDAPHRIELPPTMLTFLQAEVQTSAPNINVFSAAHAFVFRRLRQTWYPAFLLSSTYQSLLEHLKYSYRTPLKEILIDEIQSRYIEAFLLNTDAKLGPVTVGNVYLWKKIHHDLRPLGIRLARDRLSGPAGDAKNIEDLRLFIADAKAAYEAYIQPSPQTGIPGGPPLSTRVLPSGGKGKREGGRERGSTPSATALGPELRHRLAECLGRLVSQSRYYSGIGTGGIGQIDRSIIGELTSHLIDAQRVILSWLEVEVYPSFRKSWLCGILAGDIQSRRSAPVRRKKRLRTLFKSIRSFRHVYVPPCPRSEGRGLVLVSTEGVSKASVPLTHELVWGFDVAVFPI----VPALRASDLRTDV---------EGGEEEEVVREKVRGLRLDDEEEGDWWGAVGGAILSTKNRDGDAGIFQLGES-PKDAGKEQGQPLEQ--KRKTKRMLQFRSAIRSSQVMGLKKPMHSKRKREQKAEFAADEMGEERATNLCAAIEGELAKEIQRLAFPSLCLMPLERSTFVLFSPKLVVPEATLHHFVLPIVRKDIETKAHVGEGAQDAN--KXXXXXXXXXPFLKSPRAAIRSPSGDGEVEPPDLTADDVFHLYGACLIEWAPAGDEVLLPRCLALVSTEPRVASLRRAVLALRKTLGGPGVGGSPITPDTPKKTPWQLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSMA------LFSPKAASASNTFGATGGFLSPTAGGGLLMTDAASTISIPTSCSLPPPLVHSLPQHVDASFLPLFQALSPETFLKAFTATLLERPIIMKSSSRSLTMLASEGLRRLIYPFAWLQPYQPLLPVGGICNFWDYIRKKAGGTTWFDYAFEENGLDDSLVGGRGERASYAEPMTMSSSGRQVPGFLVGLETCIVEAALTATKVVSPAYGDENG-GGSSSGTCHAWACANCDVHDGGHFAGDGG---FDMDSPFSPGRSSPLSTRSTPRTTRECSSSKFRGSSXXXXXXXXXXXXXXXXXXTKYGELPSCVRASARELLAHSYIVDLDKDSMIEPRRGNYSTTALPSLPEAAASALLTSLQRIFNPSVAPPTAVGGEVGLYQGYGYRTVCAARXXXXXXXXXXXXXXXDGVGRNRKLTRDGRHGGGARSSLGASPDSQKRELGNVGGNEGDGNEQLHGAFVMFFRQVLLDRYREYTISYLEEQMVAFHADSFFASQPEPSHGFWTDLFQTRLFAHFLVVEHQRVAASFEEP 1307 MG+KYIRTS+SFEHLIDDPGWMPYFLDFLS H QSHLLLFWLEVEVFELAAGGGPSLVTQATRIYESYLG AP RI++P MLTFL+ E+ + APNINVF+A HAFVFRRL QTWYPAFLLS+TY+SLL HLK S+RTPLKE+L+DE+QSRYIEAFLLN+ + GP TVGNVYLWKKI HDLRPLG RL+RDRL GPAGDA+N DLR FI DAKA YEAYIQPSPQ G+ GGP LS+R G+G GGR+R PSATALGPELR+ +AECLGRL SQSRYYSG+GTGGIGQIDRSIIGEL ++LI+AQRVIL+WLE EVYPSF +S L GIL+G+IQS+RSAP+RRKKRLRTLFKS+RSFRHVYVPPCPRSEGRGLVLVSTE V + PLTHE VW FDVAVFP+ ALRA+DLRTDV EGGE+E+ G+R EE + GAVGGAIL +KN DGD+G F L E P G GQ EQ ++K KR L F SA+RSSQV+GL KP A+ A ++ E+ AT+LCAAIE L +EIQRLAFPSLCLMPLERSTFVLFSPKLVVPEATLHHFVLPI RKD++ + + D PF+ SPR A+RSPSG+GE+ PPDL AD LYGACL+EWAPAG +VLLPRC+ LVSTEPRVASLRRAV+ +R+++G PGVGGSPI PDTPKKTPWQLE T MA LFSPK A PT GL + D L+ SLP HVDASF PL QALSPE LKAFTA LLERP+++KSSSR+LTM+A EGLRRLIYPFAWL PY+PLLPVGG+C+FWD +++ AGG +W+DY FEE+GLD+SL+ G R SYAEPMT SS+ RQVPGFLVG+ETCIV+AALTATK+VSPAY D +G +SS CHAWACA CDVH+ G F+G G FD+DSPFSPG SPLSTRS P +TR G TKYGELP CVRAS RELLA ++IVDLD D + PRRG+ +T LP LPEAA LLTS+Q++ NPS+ PT G L GYGY V AR + + R+G A+P S++ + + GN QLH AFV FFRQ+LLDRYREYT+SYLEEQMVAFHADSF ASQPEP+H FWTD+FQTRLFA+FL+VEHQRVAASF EP Sbjct: 1 MGDKYIRTSISFEHLIDDPGWMPYFLDFLSKHGQSHLLLFWLEVEVFELAAGGGPSLVTQATRIYESYLGEGAPKRIDVPDVMLTFLEGEITSGAPNINVFAAVHAFVFRRLHQTWYPAFLLSTTYRSLLVHLKNSFRTPLKEVLLDEVQSRYIEAFLLNSTSPTGPCTVGNVYLWKKIQHDLRPLGARLSRDRLVGPAGDARNANDLRTFIMDAKAVYEAYIQPSPQVGVSGGPSLSSRSF--SGQGYEGGGRQR-DAPSATALGPELRYSIAECLGRLASQSRYYSGVGTGGIGQIDRSIIGELNTYLIEAQRVILAWLEAEVYPSFLESNLVGILSGEIQSQRSAPLRRKKRLRTLFKSVRSFRHVYVPPCPRSEGRGLVLVSTEDVFRKPEPLTHEFVWAFDVAVFPVDLTAGRALRAADLRTDVGRRESEVDGEGGEKEDA------GVRSPGGEESN--GAVGGAILCSKNEDGDSGFFHLDEPVPNSKGTSLGQEEEQGHRKKAKRPLHFSSAVRSSQVLGLPKPSVYGSNDVAGADTATEDK-EDVATSLCAAIETRLVREIQRLAFPSLCLMPLERSTFVLFSPKLVVPEATLHHFVLPISRKDVDPELRRDIRSADGRDLASSLGNRSPSPFVASPRVAVRSPSGEGELAPPDLKADQSIDLYGACLMEWAPAGADVLLPRCVVLVSTEPRVASLRRAVVRMRESMGQPGVGGSPIMPDTPKKTPWQLEDEQLRQQSERVQTMLDTSLFAPARGGKRSERPTDFQKTDAGDKTDAEESAAYWLRAWKKTGMAASASTVLFSPKRA--------------PTTNSGLSVPDPXXXXXXXXXXXXXXXLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGVCSFWDDVKRSAGGRSWYDYVFEEDGLDESLMRIAGRR-SYAEPMTASSAMRQVPGFLVGIETCIVDAALTATKIVSPAYSDGDGDSANSSSGCHAWACATCDVHEMGVFSGMDGVPSFDVDSPFSPGHPSPLSTRSMPLSTRGQG-----GHGLSPSGVATAGHAARNTSTTKYGELPPCVRASTRELLASAFIVDLDNDCVEGPRRGDPATATLPVLPEAAVCTLLTSIQQLVNPSMGSPTGAGNGDAL--GYGYHAVHVARSTDAKK------------SNHESMLRNG----------SAAPSSEETKSKDNAMKNVTGNVQLHAAFVTFFRQLLLDRYREYTLSYLEEQMVAFHADSFLASQPEPTHAFWTDMFQTRLFAYFLLVEHQRVAASFREP 1278
BLAST of NO03G01140 vs. NCBI_GenBank
Match: XP_011009995.1 (PREDICTED: uncharacterized protein LOC105114954 isoform X1 [Populus euphratica]) HSP 1 Score: 72.4 bits (176), Expect = 1.200e-8 Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 828 SLPPPLVHSLPQHVDASFLPLFQALSPETFLKAFTATLLERPIIMKSSSRSLTMLASEGLRRLIYPFAWLQPYQPLLPVGGICNFWDYI 917 SL P LP HVD SF PL Q L + LK FTA LLER I+++S+ SL +ASE + LIYPF W Y PLL G+ DYI Sbjct: 191 SLEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV----DYI 274
BLAST of NO03G01140 vs. NCBI_GenBank
Match: XP_011009996.1 (PREDICTED: uncharacterized protein LOC105114954 isoform X2 [Populus euphratica]) HSP 1 Score: 72.4 bits (176), Expect = 1.200e-8 Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 828 SLPPPLVHSLPQHVDASFLPLFQALSPETFLKAFTATLLERPIIMKSSSRSLTMLASEGLRRLIYPFAWLQPYQPLLPVGGICNFWDYI 917 SL P LP HVD SF PL Q L + LK FTA LLER I+++S+ SL +ASE + LIYPF W Y PLL G+ DYI Sbjct: 25 SLEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV----DYI 108
BLAST of NO03G01140 vs. NCBI_GenBank
Match: PNT09738.1 (hypothetical protein POPTR_012G060800v3 [Populus trichocarpa]) HSP 1 Score: 72.4 bits (176), Expect = 1.200e-8 Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 828 SLPPPLVHSLPQHVDASFLPLFQALSPETFLKAFTATLLERPIIMKSSSRSLTMLASEGLRRLIYPFAWLQPYQPLLPVGGICNFWDYI 917 SL P LP HVD SF PL Q L + LK FTA LLER I+++S+ SL +ASE + LIYPF W Y PLL G+ DYI Sbjct: 100 SLEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV----DYI 183
BLAST of NO03G01140 vs. NCBI_GenBank
Match: PNT09739.1 (hypothetical protein POPTR_012G060800v3 [Populus trichocarpa]) HSP 1 Score: 72.4 bits (176), Expect = 1.200e-8 Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 828 SLPPPLVHSLPQHVDASFLPLFQALSPETFLKAFTATLLERPIIMKSSSRSLTMLASEGLRRLIYPFAWLQPYQPLLPVGGICNFWDYI 917 SL P LP HVD SF PL Q L + LK FTA LLER I+++S+ SL +ASE + LIYPF W Y PLL G+ DYI Sbjct: 191 SLEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV----DYI 274
BLAST of NO03G01140 vs. NCBI_GenBank
Match: XP_024438199.1 (DENN domain and WD repeat-containing protein SCD1 isoform X1 [Populus trichocarpa]) HSP 1 Score: 72.4 bits (176), Expect = 1.200e-8 Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 828 SLPPPLVHSLPQHVDASFLPLFQALSPETFLKAFTATLLERPIIMKSSSRSLTMLASEGLRRLIYPFAWLQPYQPLLPVGGICNFWDYI 917 SL P LP HVD SF PL Q L + LK FTA LLER I+++S+ SL +ASE + LIYPF W Y PLL G+ DYI Sbjct: 191 SLEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV----DYI 274
BLAST of NO03G01140 vs. NCBI_GenBank
Match: XP_024438201.1 (DENN domain and WD repeat-containing protein SCD1 isoform X3 [Populus trichocarpa]) HSP 1 Score: 72.4 bits (176), Expect = 1.200e-8 Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 828 SLPPPLVHSLPQHVDASFLPLFQALSPETFLKAFTATLLERPIIMKSSSRSLTMLASEGLRRLIYPFAWLQPYQPLLPVGGICNFWDYI 917 SL P LP HVD SF PL Q L + LK FTA LLER I+++S+ SL +ASE + LIYPF W Y PLL G+ DYI Sbjct: 25 SLEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV----DYI 108
BLAST of NO03G01140 vs. NCBI_GenBank
Match: XP_024438200.1 (DENN domain and WD repeat-containing protein SCD1 isoform X2 [Populus trichocarpa]) HSP 1 Score: 72.4 bits (176), Expect = 1.200e-8 Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 828 SLPPPLVHSLPQHVDASFLPLFQALSPETFLKAFTATLLERPIIMKSSSRSLTMLASEGLRRLIYPFAWLQPYQPLLPVGGICNFWDYI 917 SL P LP HVD SF PL Q L + LK FTA LLER I+++S+ SL +ASE + LIYPF W Y PLL G+ DYI Sbjct: 191 SLEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV----DYI 274
BLAST of NO03G01140 vs. NCBI_GenBank
Match: PNY11769.1 (stomatal cytokinesis defective SCD1 protein [Trifolium pratense]) HSP 1 Score: 72.0 bits (175), Expect = 1.600e-8 Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 828 SLPPPLVHSLPQHVDASFLPLFQALSPETFLKAFTATLLERPIIMKSSSRSLTMLASEGLRRLIYPFAWLQPYQPLLPVGGICNFWDYI 917 S+ P + LP HVD SF PL Q L + F++ FTA LLER I+++++ SL LASE + LIYPF W Y PLL G+ DYI Sbjct: 191 SVEAPPNYGLP-HVDISFQPLVQCLDVDNFIRLFTAVLLERRILLRANKYSLLTLASEAICHLIYPFRWQHVYIPLLFYSGV----DYI 274
BLAST of NO03G01140 vs. NCBI_GenBank
Match: XP_021905476.1 (DENN domain and WD repeat-containing protein SCD1 [Carica papaya]) HSP 1 Score: 71.6 bits (174), Expect = 2.000e-8 Identity = 42/89 (47.19%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 828 SLPPPLVHSLPQHVDASFLPLFQALSPETFLKAFTATLLERPIIMKSSSRSLTMLASEGLRRLIYPFAWLQPYQPLLPVGGICNFWDYI 917 S+ P LP H D SF PL Q L + F+K FTA LLER I+++S+ SL L SE + L+YPF W Q Y PLL G+ DYI Sbjct: 191 SVEAPPKDGLP-HADVSFQPLVQCLDVDNFIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLMYPFRWQQVYIPLLFFSGV----DYI 274 The following BLAST results are available for this feature:
BLAST of NO03G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G01140 ID=NO03G01140|Name=NO03G01140|organism=Nannochloropsis oceanica|type=gene|length=4635bpback to top protein sequence of NO03G01140.1 >NO03G01140.1-protein ID=NO03G01140.1-protein|Name=NO03G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1333bpback to top Synonyms
Publications
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