NO02G00170, NO02G00170 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G00170 vs. NCBI_GenBank
Match: EWM30654.1 (Phosphorylated CTD interacting factor 1, WW domain protein [Nannochloropsis gaditana]) HSP 1 Score: 365.9 bits (938), Expect = 2.500e-97 Identity = 243/456 (53.29%), Postives = 288/456 (63.16%), Query Frame = 0 Query: 160 VSPHELWNPTLYVDKGTLNLPWXXXXXXXXXXXXXXXXXXXXXXXXXXHIPSIHPHVEVARTRGVKELVDWFIGAALRQGNAADRAVLFTPMTSQLGKIMFLRRSFQIWMQDNKLQEREEKEGGRGLA--VGSACRRVLTDPVLPQTATCQQDLGLAKALTGEVIKLPPDIAVELCEALGLKALGLVSSLHEQTQHPPFLASSLPPTSMLRRKQSRLDQPPVLRSRHHAPCLYLPLSTLSDARLTLLEKNEALDVSLLKGHALRINEKHYQKLKTLYTKQHISRGPPRQARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFHERLGCLLFRYQALAATGRED--------------PSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQWDLDGYFGSVGSFFAFRPLNGMYVAHPPPLPTMVECMVKVRMTGRCKGV 600 VSP ELWNP+L +D+ TLNLPW + PHVEVAR RG+ EL WF+ AL+ R T + L R+ Q W +NK+ E + +G+ G R L DPVLP ++ C++D LAK LT I+LPP+ AVELCEALG KAL L+SSL +SSLP ++ RR+ SRLD PPVLRSR HAPCLYLPLS+LS ARL LLE NEAL++SLLKGHALRIN KHYQKLK LY ++ P A XXXXXXXXXXXXXXXXXXXXXXXXXXXX FHERLGCLLFRYQALAAT R+ PS ADDA ER+LPPRV+DVLASLF +MECFASPFNCRY +CSSQ + D +FGSVGSFF F+PL GM++AHPP +V+ M+KV +G+ Sbjct: 216 VSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFL-------LQGPDPHVEVARARGLVELARWFVSTALKHATEHPR----TEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPS--------SSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQR-----PFHPASSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEFHERLGCLLFRYQALAATARDSLASSSLPPSLXXXXPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKVNRRRISRGI 647
BLAST of NO02G00170 vs. NCBI_GenBank
Match: XP_005854108.1 (phosphorylated ctd-interacting, partial [Nannochloropsis gaditana CCMP526] >EKU22251.1 phosphorylated ctd-interacting, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 363.2 bits (931), Expect = 1.600e-96 Identity = 241/446 (54.04%), Postives = 284/446 (63.68%), Query Frame = 0 Query: 160 VSPHELWNPTLYVDKGTLNLPWXXXXXXXXXXXXXXXXXXXXXXXXXXHIPSIHPHVEVARTRGVKELVDWFIGAALRQGNAADRAVLFTPMTSQLGKIMFLRRSFQIWMQDNKLQEREEKEGGRGLA--VGSACRRVLTDPVLPQTATCQQDLGLAKALTGEVIKLPPDIAVELCEALGLKALGLVSSLHEQTQHPPFLASSLPPTSMLRRKQSRLDQPPVLRSRHHAPCLYLPLSTLSDARLTLLEKNEALDVSLLKGHALRINEKHYQKLKTLYTKQHISRGPPRQARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFHERLGCLLFRYQALAATGRED--------------PSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQWDLDGYFGSVGSFFAFRPLNGMYVAHPPPLPTMVECMVK 590 VSP ELWNP+L +D+ TLNLPW + PHVEVAR RG+ EL WF+ AL+ R T + L R+ Q W +NK+ E + +G+ G R L DPVLP ++ C++D LAK LT I+LPP+ AVELCEALG KAL L+SSL +SSLP ++ RR+ SRLD PPVLRSR HAPCLYLPLS+LS ARL LLE NEAL++SLLKGHALRIN KHYQKLK LY ++ P A XXXXXXXXXXXXXXXXXXXXXXXXXXXX FHERLGCLLFRYQALAAT R+ PS ADDA ER+LPPRV+DVLASLF +MECFASPFNCRY +CSSQ + D +FGSVGSFF F+PL GM++AHPP +V+ M+K Sbjct: 139 VSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFL-------LQGPDPHVEVARARGLVELARWFVSTALKHATEHPR----TEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPS--------SSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQR-----PFHPASSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEFHERLGCLLFRYQALAATARDSLASSSLPPSLXXXXPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIK 560
BLAST of NO02G00170 vs. NCBI_GenBank
Match: EWM30653.1 (Phosphorylated CTD interacting factor 1, WW domain protein [Nannochloropsis gaditana]) HSP 1 Score: 363.2 bits (931), Expect = 1.600e-96 Identity = 241/446 (54.04%), Postives = 284/446 (63.68%), Query Frame = 0 Query: 160 VSPHELWNPTLYVDKGTLNLPWXXXXXXXXXXXXXXXXXXXXXXXXXXHIPSIHPHVEVARTRGVKELVDWFIGAALRQGNAADRAVLFTPMTSQLGKIMFLRRSFQIWMQDNKLQEREEKEGGRGLA--VGSACRRVLTDPVLPQTATCQQDLGLAKALTGEVIKLPPDIAVELCEALGLKALGLVSSLHEQTQHPPFLASSLPPTSMLRRKQSRLDQPPVLRSRHHAPCLYLPLSTLSDARLTLLEKNEALDVSLLKGHALRINEKHYQKLKTLYTKQHISRGPPRQARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFHERLGCLLFRYQALAATGRED--------------PSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQWDLDGYFGSVGSFFAFRPLNGMYVAHPPPLPTMVECMVK 590 VSP ELWNP+L +D+ TLNLPW + PHVEVAR RG+ EL WF+ AL+ R T + L R+ Q W +NK+ E + +G+ G R L DPVLP ++ C++D LAK LT I+LPP+ AVELCEALG KAL L+SSL +SSLP ++ RR+ SRLD PPVLRSR HAPCLYLPLS+LS ARL LLE NEAL++SLLKGHALRIN KHYQKLK LY ++ P A XXXXXXXXXXXXXXXXXXXXXXXXXXXX FHERLGCLLFRYQALAAT R+ PS ADDA ER+LPPRV+DVLASLF +MECFASPFNCRY +CSSQ + D +FGSVGSFF F+PL GM++AHPP +V+ M+K Sbjct: 216 VSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFL-------LQGPDPHVEVARARGLVELARWFVSTALKHATEHPR----TEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPS--------SSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQR-----PFHPASSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEFHERLGCLLFRYQALAATARDSLASSSLPPSLXXXXPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIK 637
BLAST of NO02G00170 vs. NCBI_GenBank
Match: CBJ26613.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 98.2 bits (243), Expect = 9.700e-17 Identity = 60/159 (37.74%), Postives = 75/159 (47.17%), Query Frame = 0 Query: 420 LRINEKHYQKLKTLYTKQHISRGPPRQARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFHERLGCLLFRYQALAATGREDPSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQWDLDGYFGSVGSFFAFRPLNGMYVAHPP 579 LR+N HY K+K L+++ + RQ+ FH+ L L RY+AL G + DA FDVL FGA+MECFASPFNCRYS +CS+ D DG FGS GSFF F+P G Y A+PP Sbjct: 225 LRMNSAHYDKMKELFSRSRVEGAARRQSSSTEHPPPAWIGD--------------------FHDCLFSCLMRYEALQGGGFQASMGGDA------------FDVLLKRFGARMECFASPFNCRYSRYCSAFPDTDGPFGSAGSFFDFQPTQGAYEANPP 351
BLAST of NO02G00170 vs. NCBI_GenBank
Match: CCI44492.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 93.6 bits (231), Expect = 2.400e-15 Identity = 50/120 (41.67%), Postives = 66/120 (55.00%), Query Frame = 0 Query: 482 HERLGCLLFRYQALAATGREDPSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQWDLDGYFGSVGSFFAFRPLNGMYVAHPPPLPTMVECMVKVRMTGRCKGVQE 602 +E + C+L RY+AL G SL FDV+ F QMECFASP NCRY +CS+ D D FGS+GSFF F P +G + ++PP LP ++E M MTG + +E Sbjct: 253 NEAIFCVLLRYRALDGGG------------LHASLNEECFDVMLQYFDCQMECFASPLNCRYRQYCSAYPDTDFRFGSIGSFFDFYPRSGCFESNPPFLPRLIERMA-THMTGLLEAAEE 359
BLAST of NO02G00170 vs. NCBI_GenBank
Match: XP_008872637.1 (hypothetical protein H310_08592 [Aphanomyces invadans] >ETV98440.1 hypothetical protein H310_08592 [Aphanomyces invadans]) HSP 1 Score: 91.3 bits (225), Expect = 1.200e-14 Identity = 59/171 (34.50%), Postives = 77/171 (45.03%), Query Frame = 0 Query: 417 GHALRINEKHYQKLKTLYTKQHISRGPPRQARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFHERLGCLLFRYQALAATGREDPSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQWDLDGYFGSVGSFFAFRPLNGMYVAHPPPLPTMVECM 588 G +LRIN+ H KL+TL+ + H G ++ F + L CLL RY++L G + +L FDVL F MECFASPFN RY FCS+ D D FGS GSFF FRP G + A+PP +P ++ M Sbjct: 204 GTSLRINKTHLDKLETLFGRHHAQAGATSASQ--------------------------------FPDFLFCLLLRYESLDGGG------------FQAALNEECFDVLLRHFKCNMECFASPFNSRYGRFCSAFLDTDRVFGSFGSFFDFRPTFGCFEANPPFVPALIAKM 330
BLAST of NO02G00170 vs. NCBI_GenBank
Match: XP_007882743.1 (PREDICTED: phosphorylated CTD-interacting factor 1 [Callorhinchus milii] >XP_007882750.1 PREDICTED: phosphorylated CTD-interacting factor 1 [Callorhinchus milii] >XP_007882759.1 PREDICTED: phosphorylated CTD-interacting factor 1 [Callorhinchus milii]) HSP 1 Score: 90.9 bits (224), Expect = 1.600e-14 Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 0 Query: 481 FHERLGCLLFRYQALAATGREDPSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQWDLDGYFGSVGSFFAFRPLNGMYVAHPPPLPTMVECMV 589 F R+ CLL RYQ+L G + + + +LP VF+ L LFG ECFASP NC + +CS+ D DGYFGS GSF +F P++G + A+PP +++ MV Sbjct: 483 FLARIWCLLRRYQSLFGVGVHEGT------GLQGALPVPVFEALNKLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGSFLSFSPISGSFEANPPFGEELMDSMV 584
BLAST of NO02G00170 vs. NCBI_GenBank
Match: CCA19485.1 (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 90.5 bits (223), Expect = 2.000e-14 Identity = 50/120 (41.67%), Postives = 63/120 (52.50%), Query Frame = 0 Query: 482 HERLGCLLFRYQALAATGREDPSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQWDLDGYFGSVGSFFAFRPLNGMYVAHPPPLPTMVECMVKVRMTGRCKGVQE 602 +E + C+L RY AL G SL FDV+ F QMECFASP N RY +CS+ D D FGS+GSFF F P +G Y ++PP LP ++E M MT K +E Sbjct: 249 NEAIFCVLMRYMALDGGG------------LHASLNEECFDVMLQYFDCQMECFASPLNSRYQQYCSAYPDTDFRFGSIGSFFHFYPQSGCYESNPPFLPRLIERMA-THMTALLKSAEE 355
BLAST of NO02G00170 vs. NCBI_GenBank
Match: XP_009514873.1 (hypothetical protein PHYSODRAFT_467960 [Phytophthora sojae] >EGZ27598.1 hypothetical protein PHYSODRAFT_467960 [Phytophthora sojae]) HSP 1 Score: 90.1 bits (222), Expect = 2.700e-14 Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 0 Query: 481 FHERLGCLLFRYQALAATGREDPSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQWDLDGYFGSVGSFFAFRPLNGMYVAHPPPLPTMVECM 588 F L CLL RY +L G + + +L FDVL F +MECFASP NCRYS FCS+ D D FGSVGSFF F P +G + A+PP +P +++ M Sbjct: 160 FESALFCLLLRYDSLDGGGFQ-----------QAALNEECFDVLLKEFDCKMECFASPLNCRYSRFCSAFLDTDCAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRM 255
BLAST of NO02G00170 vs. NCBI_GenBank
Match: XP_017827568.1 (PREDICTED: phosphorylated CTD-interacting factor 1 isoform X2 [Callithrix jacchus]) HSP 1 Score: 90.1 bits (222), Expect = 2.700e-14 Identity = 52/141 (36.88%), Postives = 69/141 (48.94%), Query Frame = 0 Query: 481 FHERLGCLLFRYQALAATGREDPSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQWDLDGYFGSVGSFFAFRPLNGMYVAHPPPLPTMVECMVKVRMTGRCKGVQENRGR----PHIWTCRTNAGA 618 F R+ CLL RYQ + G + + + SLP VF+ L LFG ECFASP NC + +CS+ D DGYFGS G F PL+G + A+PP +++ MV G + GR W C+ A A Sbjct: 464 FLPRVWCLLRRYQMMFGVGLYEGT------GLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEELMDAMVSHFEGGNALQGRPQHGRALPTERPWLCQVGADA 598 The following BLAST results are available for this feature:
BLAST of NO02G00170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G00170 ID=NO02G00170|Name=NO02G00170|organism=Nannochloropsis oceanica|type=gene|length=2852bpback to top protein sequence of NO02G00170.1 >NO02G00170.1-protein ID=NO02G00170.1-protein|Name=NO02G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=745bpback to top protein sequence of NO02G00170.2 >NO02G00170.2-protein ID=NO02G00170.2-protein|Name=NO02G00170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=640bpback to top Synonyms
Publications
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