Naga_100242g2, gene20 (gene) Nannochloropsis gaditana

Overview
NameNaga_100242g2
Unique Namegene20
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:72588..75741 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100242g2
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:72588..75741 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL000ngnoL000Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00170NO02G00170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna21rna21-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide
rna22rna22-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna21rna21Nannochloropsis gaditana (N. gaditana B-31)mRNA
rna22rna22Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna21

>rna21-protein ID=rna21-protein|Name=rna21|organism=Nannochloropsis gaditana|type=polypeptide|length=648bp
MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISV
ASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLS
PSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATR
GSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTP
QVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFP
RPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSP
PQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPG
SSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSL
PSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALE
LSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSS
SSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSL
PSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRE
TDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKVNRRRISRGIV
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protein sequence of rna22

>rna22-protein ID=rna22-protein|Name=rna22|organism=Nannochloropsis gaditana|type=polypeptide|length=790bp
MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISV
ASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLS
PSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATR
GSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTP
QVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFP
RPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSP
PQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPG
SSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSL
PSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALE
LSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSS
SSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSL
PSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRE
TDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSR
LLGFFVVLSSGLVSVDSSTATTIRSPPPFSPFQAWSIRVAATDYAFIAGS
DYYQPRRYIHSGSDDSDGLDDLLLVALLSPAAAADPAYQLNSTREEEVRE
AFGSYKNELARDRLEPPPKDLTNPASVRDAKGGGTAEWWW
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Synonyms
Publications