NO01G05840, NO01G05840 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G05840 vs. NCBI_GenBank
Match: EWM22806.1 (intraflagellar transport protein 52 [Nannochloropsis gaditana]) HSP 1 Score: 377.9 bits (969), Expect = 6.000e-101 Identity = 277/558 (49.64%), Postives = 324/558 (58.06%), Query Frame = 0
Query: 40 ATLYHQEHP--PPSRPQPPFVLFDYTKGENCQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRP----FAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGW--ETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLALPLHDEGETQEGG-----EEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEG--SSSEGG----LEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHK-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADG-XXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEV 577
A L +Q HP P + V+F+ KGEN Q +KRLFRRLR+AG+ V INK D+PS+L V++ Q +RP A ACPQ F+ E QA++R+L + S+LLLLSEG S +S +N WLQP G+HAH DAVLR RRHPR+PHPKEVFL+L E E + G EEEG GFS VYPYGCSLSV PPAK L+SSG +YP RP+LAAWEG +GG XXX XXXXXXX XXXXXXXXXXXXXXXXXXXXXX GAA++ DAWLDQEDN LAD +F+WLLH+ LP SLQPRL P ++D+AQQLRPCLQ PQ H DL L G E+PPL++L PN L+PEVLAT+ ALGLEPE PLR +APE VCP PPLR AVFPPSFA P LEQFDLD FASP T+LAR+ KC SR E + E + +DL YFVREAAEV
Sbjct: 31 ARLTYQPHPGQAPLEERHNHVVFNAVKGENYQNMKRLFRRLRRAGLKVTINKHSDVPSIL---VREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGXXXXXXXXXEXXXXXXXWLNGXXXXXXXXXXXXXXXXXXXXXXVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPXXXPTLEQFDLDQVFASPRTQLARLFHKCA-------SSRLEGAK----EGSREDLSYFVREAAEV 574
BLAST of NO01G05840 vs. NCBI_GenBank
Match: XP_005853911.1 (intraflagellar transport protein 52, partial [Nannochloropsis gaditana CCMP526] >EKU22446.1 intraflagellar transport protein 52, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 220.3 bits (560), Expect = 1.600e-53 Identity = 206/493 (41.78%), Postives = 240/493 (48.68%), Query Frame = 0
Query: 137 QAIARYLHQQKGSILLLLSEGW--ETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLALPLHDEGETQEGG-----EEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSS-------EGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALF---------------------------------QWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLR-----VPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADG-XXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEV 577
QA++R+L + S+LLLLSEG S +S +N WLQP G+HAH DAVLR RRHPR+PHPKEVFL+L E E + G EEE GFS VYPYGCSLSV PPAK L+SSG +YP RP+LAAWEG + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GA ++ DAWLDQEDN LAD +F QWLLH+ X P ++D+AQQLRPCLQ PQ H DL L G E+PPL++L PN L+PEVLAT+ ALGLEPE PLR +APE V FASP T+LAR+ KC SR E + E + +DL YFVREAAE+
Sbjct: 2 QALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEEKDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVVLGAVDMWTDAWLDQEDNGWLADVIFRVGARKAPEGEGEGKERGGEGWHHSRPLVLPRSQWLLHREPDAESSAPPSNLGQASFSHDRSPSRLAQLLFCGDARPEQERAHDXXXXXXXXXXXXXXXCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFV-------------------------------FASPRTQLARLFHKCA-------SSRLEGAK----EGSREDLSYFVREAAEI 452
BLAST of NO01G05840 vs. NCBI_GenBank
Match: ETK82527.1 (hypothetical protein L915_12105 [Phytophthora parasitica] >ETP12213.1 hypothetical protein F441_12369 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 162.5 bits (410), Expect = 4.000e-36 Identity = 162/564 (28.72%), Postives = 239/564 (42.38%), Query Frame = 0
Query: 58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVF----------------------LALPLHDEGETQEGGE-EEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
VLFD +K E LK+L R+L K V++NKD DL + + + + + FA + FS E + +L+ GSILL+L EG E + +++N WL+ G+ + DAV+RT H +Y HPKEV L + + T GG E+ +G + VYPYG +L+V+ PA +L+SSG ++YP +RP++AAW+ EGG+ G+A+ D W+D+E+NA L + +F+WLL L +R+P + ++ +LR C+QE +E P+ D RLF D LF + L+PE + YR LG++ E PL LI P+ CPLPPL+ AVFPP+ PPP L+QFDLD FAS S RLA++ KC + DDL Y+VRE+A++ G++ +R K V
Sbjct: 18 VLFDASKKEQFYPTSGLKKLARKL-KPLCRVDVNKD-DL------SRDRIKDASVLVFAGI------------RERFSSTEFATLKEFLN-GGGSILLMLGEGGEQ-----TFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLISSGVVNRELARMVNELYGRKDLLISGREAKPTGPGGALEKDQKGLTFVYPYGATLTVKKPAASLLSSGFISYPVNRPVVAAWQ----EGGV----------------------------AAPASKSGRLIVFGSAQCFVDEWIDKEENAKLQEIIFRWLLKDKIISLNHQDAE------------------------------------DPDLNEYVRLPDTQALSDRLRSCMQE-SEELPK---DFTRLF----------------------DDSLFKFDTS-LIPEAVNLYRELGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVRESADI--LGILPRLDPERSDAKHV 434
BLAST of NO01G05840 vs. NCBI_GenBank
Match: XP_008908713.1 (hypothetical protein PPTG_13977 [Phytophthora parasitica INRA-310] >ETM42403.1 hypothetical protein L914_11941 [Phytophthora parasitica] >ETN06211.1 hypothetical protein PPTG_13977 [Phytophthora parasitica INRA-310] >ETP40350.1 hypothetical protein F442_12304 [Phytophthora parasitica P10297] >KUF83398.1 Intraflagellar Transport Protein 52 [Phytophthora nicotianae] >KUF98319.1 hypothetical protein AM588_10008957 [Phytophthora nicotianae]) HSP 1 Score: 162.5 bits (410), Expect = 4.000e-36 Identity = 162/564 (28.72%), Postives = 239/564 (42.38%), Query Frame = 0
Query: 58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVF----------------------LALPLHDEGETQEGGE-EEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
VLFD +K E LK+L R+L K V++NKD DL + + + + + FA + FS E + +L+ GSILL+L EG E + +++N WL+ G+ + DAV+RT H +Y HPKEV L + + T GG E+ +G + VYPYG +L+V+ PA +L+SSG ++YP +RP++AAW+ EGG+ G+A+ D W+D+E+NA L + +F+WLL L +R+P + ++ +LR C+QE +E P+ D RLF D LF + L+PE + YR LG++ E PL LI P+ CPLPPL+ AVFPP+ PPP L+QFDLD FAS S RLA++ KC + DDL Y+VRE+A++ G++ +R K V
Sbjct: 18 VLFDASKKEQFYPTSGLKKLARKL-KPLCRVDVNKD-DL------SRDRIKDASVLVFAGI------------RERFSSTEFATLKEFLN-GGGSILLMLGEGGEQ-----TFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLISSGVVNRELARMVNELYGRKDLLISGREAKPTGPGGALEKDQKGLTFVYPYGATLTVKKPAASLLSSGFISYPVNRPVVAAWQ----EGGV----------------------------AAPASKSGRLIVFGSAQCFVDEWIDKEENAKLQEIIFRWLLKDKSISLNHQDAE------------------------------------DPDLNEYVRLPDTQALSDRLRSCMQE-SEELPK---DFTRLF----------------------DDSLFKFDTS-LIPEAVNLYRELGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVRESADI--LGILPRLDPERSDAKHV 434
BLAST of NO01G05840 vs. NCBI_GenBank
Match: ETI42505.1 (hypothetical protein F443_12383 [Phytophthora parasitica P1569] >ETL35911.1 hypothetical protein L916_12030 [Phytophthora parasitica] >ETL89145.1 hypothetical protein L917_11871 [Phytophthora parasitica] >ETO71119.1 hypothetical protein F444_12483 [Phytophthora parasitica P1976]) HSP 1 Score: 162.2 bits (409), Expect = 5.200e-36 Identity = 162/564 (28.72%), Postives = 239/564 (42.38%), Query Frame = 0
Query: 58 VLFDYTKGENC---QTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVF----------------------LALPLHDEGETQEGGE-EEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
VLFD +K E LK+L R+L K V++NKD DL + + + + + FA + FS E + +L+ GSILL+L EG E + +++N WL+ G+ + DAV+RT H +Y HPKEV L + + T GG E+ +G + VYPYG +L+V+ PA +L+SSG ++YP +RP++AAW+ EGG+ G+A+ D W+D+E+NA L + +F+WLL L +R+P + ++ +LR C+QE +E P+ D RLF D LF + L+PE + YR LG++ E PL LI P+ CPLPPL+ AVFPP+ PPP L+QFDLD FAS S RLA++ KC + DDL Y+VRE+A++ G++ +R K V
Sbjct: 18 VLFDASKKEQFYPNSGLKKLARKL-KPLCRVDVNKD-DL------SRDRIKDASVLVFAGI------------RERFSSTEFATLKEFLN-GGGSILLMLGEGGEQ-----TFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLISSGVVNRELARMVNELYGRKDLLISGREAKPTGPGGALEKDQKGLTFVYPYGATLTVKKPAASLLSSGFISYPVNRPVVAAWQ----EGGV----------------------------AAPASKSGRLIVFGSAQCFVDEWIDKEENAKLQEIIFRWLLKDKSISLNHQDAE------------------------------------DPDLNEYVRLPDTQALSDRLRSCMQE-SEELPK---DFTRLF----------------------DDSLFKFDTS-LIPEAVNLYRELGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVRESADI--LGILPRLDPERSDAKHV 434
BLAST of NO01G05840 vs. NCBI_GenBank
Match: XP_008620805.1 (hypothetical protein SDRG_16376 [Saprolegnia diclina VS20] >EQC25780.1 hypothetical protein SDRG_16376 [Saprolegnia diclina VS20]) HSP 1 Score: 161.4 bits (407), Expect = 8.900e-36 Identity = 157/562 (27.94%), Postives = 238/562 (42.35%), Query Frame = 0
Query: 58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLA---------------------LPLHDEGETQEGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
V+FD +K E K+L R+L K VE+NKD DL ++ + + +HL FA + FS E QA+ YL ++ GSIL L+ EG +T + +++N+WL+ G+ + DAV+RT H +Y HPKEV + + D + G E+ RG V+PYG +L+V+ P+ ++SSG +++P +RP+ A + S++G G+A + +D WLD+E+N L D LF+WLL L R+P + ++++LR C+QE E P+ D +LF D LF+ + L+PE +A ++ LG++ E PL LI P+ CPLPPL+PAVFPP PPP L+QFDLD FAS S RLA++ KC + DDL Y+V+E+A + G++ +R K V
Sbjct: 24 VMFDASKKEEFYPTSGYKKLARKL-KTSCKVEVNKD-DL------SLDRLKQAHLLVFAGV------------RERFSSSEFQALKDYL-REGGSILFLVGEGGDT-----RHDTNLNSWLKEFGITINADAVIRTVYH-KYHHPKEVLVTSGVVNREIARMTNVLSGRGKDIFARDPAADKAHGLEKDQRGLDFVFPYGATLNVKKPSAPILSSGFISFPMNRPVAAVY---SADG-----------------------------VSAPPKKCGRLAVLGSAHVFSDDWLDKEENTKLQDILFRWLLKDKEILFDAFDAG------------------------------------DPDLSDYFRLPDTQALSERLRSCMQE-GEELPK---DFTKLF----------------------DNALFTFDTS-LIPEAVALFKELGVKHE-PLTLIPPQFECPLPPLKPAVFPPILREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVKESAVI--LGILPKLDPERSDAKHV 438
BLAST of NO01G05840 vs. NCBI_GenBank
Match: OQS01756.1 (Intraflagellar Transport Protein 52 [Achlya hypogyna]) HSP 1 Score: 161.0 bits (406), Expect = 1.200e-35 Identity = 157/562 (27.94%), Postives = 236/562 (41.99%), Query Frame = 0
Query: 58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLA---------------------LPLHDEGETQEGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
V+FD +K E K+L R+L K VE+NKD DL ++ + + +HL FA + FS E QA+ YL ++ GS+L L+ EG + N +++N+WL+ G+ + DAV+RT H +Y HPKEV + + D + G E+ RG V+PYG +L+V+ PA ++SSG +++P +RP+ A + S++G G+ L +D WLD+E+N+ L D LF+WLL L R+P + ++++LR C+QE E P+ D +LF D LF + L+PE +A ++ LG++ E PL LI P+ CPLPPL+PAVFPP PPP L+QFDLD FAS S RLA++ KC + DDL Y+V+E+A + G++ +R K V
Sbjct: 24 VMFDASKKEEFYPTAGYKKLARKL-KTTCKVEVNKD-DL------SLDRLKQAHLLVFAGV------------RERFSSSEFQALKDYL-REGGSLLFLVGEGGDQ-----RNDTNLNSWLKEFGITVNTDAVIRTVYH-KYHHPKEVLITSGVVNREIARMSNVISGRGKDIFARDPAADKAHGLEKDQRGLDFVFPYGATLNVKKPAAPILSSGFISFPMNRPIAAVY---SADG-----------------------------VSAPPKKCGRLAVLGSTHLFSDDWLDKEENSKLQDILFRWLLKDKDILFDAFDAG------------------------------------DPDLSDYFRLPDTQALSERLRSCMQE-GEELPK---DFTKLF----------------------DNSLFKFDTS-LIPEAVALFKDLGVKHE-PLTLIPPQFECPLPPLKPAVFPPILREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVKESAVI--LGILPKLDPERSDAKHV 438
BLAST of NO01G05840 vs. NCBI_GenBank
Match: XP_002895569.1 (Intraflagellar Transport Protein 52 [Phytophthora infestans T30-4] >EEY55860.1 Intraflagellar Transport Protein 52 [Phytophthora infestans T30-4]) HSP 1 Score: 160.2 bits (404), Expect = 2.000e-35 Identity = 158/545 (28.99%), Postives = 232/545 (42.57%), Query Frame = 0
Query: 58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLAL------------PLHDEGETQEGGEEE-----GG------RGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEV 577
VLFD +K E LK+L R+L K V++NKD DL + + + + + FA + FS E + +L+ GSILL+L EG E + +++N WL+ G+ + DAV+RT H +Y HPKEV ++ L+ + G E GG +G + VYPYG +L+V+ PA L+SSG ++YP +RP++AAW+ EGG+ G+A+ D W+D+E+NA L + +F+WLL L +R+P + ++ +LR C+QE +E P+ D RLF D LF + L+PE + YR LG++ E PL LI P+ CPLPPL+ AVFPP+ PPP L+QFDLD FAS S RLA++ KC + DDL Y+VRE+A++
Sbjct: 18 VLFDASKKEQFYPTSGLKKLARKL-KPLCRVDVNKD-DL------SRDRIKDASVLVFAGV------------RERFSSTEFATLKDFLN-SGGSILLMLGEGGEQ-----TFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLISSGVVNRELARMVNVLYGRKDLLVAGRESKPLGPGGALEKDQKGLTFVYPYGATLTVKKPAAPLLSSGFISYPVNRPVVAAWQ----EGGV----------------------------AGPASKSGRLIVFGSAQCFVDEWIDKEENAKLQEIIFRWLLKDKSISLNHQDAE------------------------------------DPDLNEYVRLPDTQALSDRLRSCMQE-SEDLPK---DFTRLF----------------------DDSLFKFDTS-LIPEAVNLYRELGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVRESADI 417
BLAST of NO01G05840 vs. NCBI_GenBank
Match: XP_024579902.1 (intraflagellar transport protein 52 homolog [Plasmopara halstedii] >CEG43533.1 intraflagellar transport protein 52 homolog [Plasmopara halstedii]) HSP 1 Score: 159.5 bits (402), Expect = 3.400e-35 Identity = 158/564 (28.01%), Postives = 236/564 (41.84%), Query Frame = 0
Query: 58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLALPLHDEGETQ-----------------------EGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
VLFD +K E LK+L RRL K V++NKD DL + + + +++ FA + FS E + +L GSILL+L EG E +++N WL+ G+ + DAV+RT H +Y HPKEV ++ + + T+ +G E+ +G S VYPYG +L+V+ PA L+SSGS++YP +RP+ AAW+ E G+ G+ + D W+D+E+NA L + +F+WLL L +R+P + ++ +LR C+QE +E P+ D RLF D LF + L+PE + Y LG++ E PL LI P+ CPLPPL+ AVFPP+ PPP L+QFDLD FAS + RLA++ KC + +DL Y+VRE+A++ G+M +R K +
Sbjct: 16 VLFDASKKEQFYPASGLKKLARRL-KPLCRVDVNKD-DL------SRDRIKDANVLVFAGV------------RERFSSTEFATLKDFL-SSGGSILLMLGEGGEQ-----QFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLVSRGVVNRELTRMANELFSRKDVLMSGRDLKVTGSDGAPEKDQKGLSFVYPYGATLNVKKPAATLLSSGSVSYPVNRPVAAAWQ----ERGV----------------------------AAPASKSGRLIVFGSTQCFVDEWIDKEENAKLQEIIFRWLLKDKTINLNHQDAE------------------------------------DPDLNEYVRLPDTQALSDRLRSCMQE-SEELPK---DFTRLF----------------------DDSLFKFDTS-LIPEAVNLYHDLGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASETLRLAQLTNKC----------------------SDEDLEYYVRESADI--LGIMPRLNPERSDAKHI 432
BLAST of NO01G05840 vs. NCBI_GenBank
Match: OQS05865.1 (Intraflagellar Transport Protein 52 [Thraustotheca clavata]) HSP 1 Score: 159.5 bits (402), Expect = 3.400e-35 Identity = 151/543 (27.81%), Postives = 227/543 (41.80%), Query Frame = 0
Query: 58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLALPL---------------------HDEGETQEGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEV 577
V+FD +K E K+L R+L K VE+NKD DL ++++ + +HL FA + FS E QA+ Y+ ++ GSIL L+ EG + N +++N+WL+ G+ + DAV+RT H +Y HPKEV + + D + G E+ RG V+PYG +L+V+ P+ ++SSG +++P +RP+ A + SS+G G+ + +D W D+E+N L D LF+WLL L R+P + ++++LR C+QE E P+D L LF F ++ L+PE +A ++ LG++ E PL LI P+ CPLPPLRPAVFPP PPP L+QFDLD FAS S RLA++ KC + DDL Y+V+E+A +
Sbjct: 24 VMFDASKKEEFYPTAGYKKLARKL-KTSCKVEVNKD-DL------SLERLKQAHLLVFAGV------------RERFSSSEFQALKDYM-REGGSILFLVGEGGDQ-----RNDTNLNSWLKEFGITVNTDAVIRTVYH-KYHHPKEVLITSGIVNREIARMSNIISGRGKDIFARDPAADKAHGLEKDQRGLDFVFPYGATLNVKKPSAPILSSGFISFPMNRPVGAVY---SSDG-----------------------------VSAPPKKCGRLAVLGSTHIFSDDWYDKEENTKLQDILFRWLLKDKDILFDPFDAE------------------------------------DPDLSDYFRLPDTQALSERLRSCMQE-GEELPKDFTKLFDNTLFK-----------------------FDIS---LIPEAVALFKELGVKHE-PLTLIPPQFECPLPPLRPAVFPPILREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVKESAVI 421 The following BLAST results are available for this feature:
BLAST of NO01G05840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G05840 ID=NO01G05840|Name=NO01G05840|organism=Nannochloropsis oceanica|type=gene|length=3593bpback to top protein sequence of NO01G05840.2 >NO01G05840.2-protein ID=NO01G05840.2-protein|Name=NO01G05840.2|organism=Nannochloropsis oceanica|type=polypeptide|length=644bpback to top protein sequence of NO01G05840.1 >NO01G05840.1-protein ID=NO01G05840.1-protein|Name=NO01G05840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=607bpback to top Synonyms
Publications
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