NO01G05840, NO01G05840 (gene) Nannochloropsis oceanica

Overview
NameNO01G05840
Unique NameNO01G05840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3593
Alignment locationchr1:1640926..1644563 -

Link to JBrowse

Properties
Property NameValue
DescriptionIntraflagellar transport protein 52
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1640926..1644563 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0060271cilium assembly
Vocabulary: Cellular Component
TermDefinition
GO:0031514motile cilium
Homology
BLAST of NO01G05840 vs. NCBI_GenBank
Match: EWM22806.1 (intraflagellar transport protein 52 [Nannochloropsis gaditana])

HSP 1 Score: 377.9 bits (969), Expect = 6.000e-101
Identity = 277/558 (49.64%), Postives = 324/558 (58.06%), Query Frame = 0
Query:   40 ATLYHQEHP--PPSRPQPPFVLFDYTKGENCQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRP----FAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGW--ETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLALPLHDEGETQEGG-----EEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEG--SSSEGG----LEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHK-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADG-XXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEV 577
            A L +Q HP   P   +   V+F+  KGEN Q +KRLFRRLR+AG+ V INK  D+PS+L   V++ Q   +RP     A           ACPQ  F+  E QA++R+L  +  S+LLLLSEG       S    +S +N WLQP G+HAH DAVLR RRHPR+PHPKEVFL+L    E E  + G     EEEG  GFS VYPYGCSLSV PPAK L+SSG  +YP  RP+LAAWEG     +GG      XXX XXXXXXX    XXXXXXXXXXXXXXXXXXXXXX   GAA++  DAWLDQEDN  LAD +F+WLLH+                                               LP SLQPRL  P ++D+AQQLRPCLQ      PQ H DL  L       G               E+PPL++L PN L+PEVLAT+ ALGLEPE PLR +APE VCP PPLR AVFPPSFA    P LEQFDLD  FASP T+LAR+  KC         SR E  +    E + +DL YFVREAAEV
Sbjct:   31 ARLTYQPHPGQAPLEERHNHVVFNAVKGENYQNMKRLFRRLRRAGLKVTINKHSDVPSIL---VREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGXXXXXXXXXEXXXXXXXWLNGXXXXXXXXXXXXXXXXXXXXXXVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPXXXPTLEQFDLDQVFASPRTQLARLFHKCA-------SSRLEGAK----EGSREDLSYFVREAAEV 574          
BLAST of NO01G05840 vs. NCBI_GenBank
Match: XP_005853911.1 (intraflagellar transport protein 52, partial [Nannochloropsis gaditana CCMP526] >EKU22446.1 intraflagellar transport protein 52, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 220.3 bits (560), Expect = 1.600e-53
Identity = 206/493 (41.78%), Postives = 240/493 (48.68%), Query Frame = 0
Query:  137 QAIARYLHQQKGSILLLLSEGW--ETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLALPLHDEGETQEGG-----EEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSS-------EGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALF---------------------------------QWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLR-----VPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADG-XXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEV 577
            QA++R+L  +  S+LLLLSEG       S    +S +N WLQP G+HAH DAVLR RRHPR+PHPKEVFL+L    E E  + G     EEE   GFS VYPYGCSLSV PPAK L+SSG  +YP  RP+LAAWEG +             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GA ++  DAWLDQEDN  LAD +F                                 QWLLH+                                             X                P ++D+AQQLRPCLQ      PQ H DL  L       G               E+PPL++L PN L+PEVLAT+ ALGLEPE PLR +APE V                               FASP T+LAR+  KC         SR E  +    E + +DL YFVREAAE+
Sbjct:    2 QALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEEKDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVVLGAVDMWTDAWLDQEDNGWLADVIFRVGARKAPEGEGEGKERGGEGWHHSRPLVLPRSQWLLHREPDAESSAPPSNLGQASFSHDRSPSRLAQLLFCGDARPEQERAHDXXXXXXXXXXXXXXXCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFV-------------------------------FASPRTQLARLFHKCA-------SSRLEGAK----EGSREDLSYFVREAAEI 452          
BLAST of NO01G05840 vs. NCBI_GenBank
Match: ETK82527.1 (hypothetical protein L915_12105 [Phytophthora parasitica] >ETP12213.1 hypothetical protein F441_12369 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 162.5 bits (410), Expect = 4.000e-36
Identity = 162/564 (28.72%), Postives = 239/564 (42.38%), Query Frame = 0
Query:   58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVF----------------------LALPLHDEGETQEGGE-EEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
            VLFD +K E       LK+L R+L K    V++NKD DL      +  + + + +  FA              +  FS  E   +  +L+   GSILL+L EG E      +  +++N WL+  G+  + DAV+RT  H +Y HPKEV                       L +   +   T  GG  E+  +G + VYPYG +L+V+ PA +L+SSG ++YP +RP++AAW+    EGG+                                         G+A+   D W+D+E+NA L + +F+WLL                                                    L   +R+P  + ++ +LR C+QE +E  P+   D  RLF                      D  LF    + L+PE +  YR LG++ E PL LI P+  CPLPPL+ AVFPP+    PPP L+QFDLD  FAS S RLA++  KC                      + DDL Y+VRE+A++   G++     +R   K V
Sbjct:   18 VLFDASKKEQFYPTSGLKKLARKL-KPLCRVDVNKD-DL------SRDRIKDASVLVFAGI------------RERFSSTEFATLKEFLN-GGGSILLMLGEGGEQ-----TFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLISSGVVNRELARMVNELYGRKDLLISGREAKPTGPGGALEKDQKGLTFVYPYGATLTVKKPAASLLSSGFISYPVNRPVVAAWQ----EGGV----------------------------AAPASKSGRLIVFGSAQCFVDEWIDKEENAKLQEIIFRWLLKDKIISLNHQDAE------------------------------------DPDLNEYVRLPDTQALSDRLRSCMQE-SEELPK---DFTRLF----------------------DDSLFKFDTS-LIPEAVNLYRELGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVRESADI--LGILPRLDPERSDAKHV 434          
BLAST of NO01G05840 vs. NCBI_GenBank
Match: XP_008908713.1 (hypothetical protein PPTG_13977 [Phytophthora parasitica INRA-310] >ETM42403.1 hypothetical protein L914_11941 [Phytophthora parasitica] >ETN06211.1 hypothetical protein PPTG_13977 [Phytophthora parasitica INRA-310] >ETP40350.1 hypothetical protein F442_12304 [Phytophthora parasitica P10297] >KUF83398.1 Intraflagellar Transport Protein 52 [Phytophthora nicotianae] >KUF98319.1 hypothetical protein AM588_10008957 [Phytophthora nicotianae])

HSP 1 Score: 162.5 bits (410), Expect = 4.000e-36
Identity = 162/564 (28.72%), Postives = 239/564 (42.38%), Query Frame = 0
Query:   58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVF----------------------LALPLHDEGETQEGGE-EEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
            VLFD +K E       LK+L R+L K    V++NKD DL      +  + + + +  FA              +  FS  E   +  +L+   GSILL+L EG E      +  +++N WL+  G+  + DAV+RT  H +Y HPKEV                       L +   +   T  GG  E+  +G + VYPYG +L+V+ PA +L+SSG ++YP +RP++AAW+    EGG+                                         G+A+   D W+D+E+NA L + +F+WLL                                                    L   +R+P  + ++ +LR C+QE +E  P+   D  RLF                      D  LF    + L+PE +  YR LG++ E PL LI P+  CPLPPL+ AVFPP+    PPP L+QFDLD  FAS S RLA++  KC                      + DDL Y+VRE+A++   G++     +R   K V
Sbjct:   18 VLFDASKKEQFYPTSGLKKLARKL-KPLCRVDVNKD-DL------SRDRIKDASVLVFAGI------------RERFSSTEFATLKEFLN-GGGSILLMLGEGGEQ-----TFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLISSGVVNRELARMVNELYGRKDLLISGREAKPTGPGGALEKDQKGLTFVYPYGATLTVKKPAASLLSSGFISYPVNRPVVAAWQ----EGGV----------------------------AAPASKSGRLIVFGSAQCFVDEWIDKEENAKLQEIIFRWLLKDKSISLNHQDAE------------------------------------DPDLNEYVRLPDTQALSDRLRSCMQE-SEELPK---DFTRLF----------------------DDSLFKFDTS-LIPEAVNLYRELGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVRESADI--LGILPRLDPERSDAKHV 434          
BLAST of NO01G05840 vs. NCBI_GenBank
Match: ETI42505.1 (hypothetical protein F443_12383 [Phytophthora parasitica P1569] >ETL35911.1 hypothetical protein L916_12030 [Phytophthora parasitica] >ETL89145.1 hypothetical protein L917_11871 [Phytophthora parasitica] >ETO71119.1 hypothetical protein F444_12483 [Phytophthora parasitica P1976])

HSP 1 Score: 162.2 bits (409), Expect = 5.200e-36
Identity = 162/564 (28.72%), Postives = 239/564 (42.38%), Query Frame = 0
Query:   58 VLFDYTKGENC---QTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVF----------------------LALPLHDEGETQEGGE-EEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
            VLFD +K E       LK+L R+L K    V++NKD DL      +  + + + +  FA              +  FS  E   +  +L+   GSILL+L EG E      +  +++N WL+  G+  + DAV+RT  H +Y HPKEV                       L +   +   T  GG  E+  +G + VYPYG +L+V+ PA +L+SSG ++YP +RP++AAW+    EGG+                                         G+A+   D W+D+E+NA L + +F+WLL                                                    L   +R+P  + ++ +LR C+QE +E  P+   D  RLF                      D  LF    + L+PE +  YR LG++ E PL LI P+  CPLPPL+ AVFPP+    PPP L+QFDLD  FAS S RLA++  KC                      + DDL Y+VRE+A++   G++     +R   K V
Sbjct:   18 VLFDASKKEQFYPNSGLKKLARKL-KPLCRVDVNKD-DL------SRDRIKDASVLVFAGI------------RERFSSTEFATLKEFLN-GGGSILLMLGEGGEQ-----TFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLISSGVVNRELARMVNELYGRKDLLISGREAKPTGPGGALEKDQKGLTFVYPYGATLTVKKPAASLLSSGFISYPVNRPVVAAWQ----EGGV----------------------------AAPASKSGRLIVFGSAQCFVDEWIDKEENAKLQEIIFRWLLKDKSISLNHQDAE------------------------------------DPDLNEYVRLPDTQALSDRLRSCMQE-SEELPK---DFTRLF----------------------DDSLFKFDTS-LIPEAVNLYRELGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVRESADI--LGILPRLDPERSDAKHV 434          
BLAST of NO01G05840 vs. NCBI_GenBank
Match: XP_008620805.1 (hypothetical protein SDRG_16376 [Saprolegnia diclina VS20] >EQC25780.1 hypothetical protein SDRG_16376 [Saprolegnia diclina VS20])

HSP 1 Score: 161.4 bits (407), Expect = 8.900e-36
Identity = 157/562 (27.94%), Postives = 238/562 (42.35%), Query Frame = 0
Query:   58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLA---------------------LPLHDEGETQEGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
            V+FD +K E        K+L R+L K    VE+NKD DL      ++ + + +HL  FA              +  FS  E QA+  YL ++ GSIL L+ EG +T      + +++N+WL+  G+  + DAV+RT  H +Y HPKEV +                      +   D    +  G E+  RG   V+PYG +L+V+ P+  ++SSG +++P +RP+ A +   S++G                                           G+A + +D WLD+E+N  L D LF+WLL                                                    L    R+P  + ++++LR C+QE  E  P+   D  +LF                      D  LF+   + L+PE +A ++ LG++ E PL LI P+  CPLPPL+PAVFPP     PPP L+QFDLD  FAS S RLA++  KC                      + DDL Y+V+E+A +   G++     +R   K V
Sbjct:   24 VMFDASKKEEFYPTSGYKKLARKL-KTSCKVEVNKD-DL------SLDRLKQAHLLVFAGV------------RERFSSSEFQALKDYL-REGGSILFLVGEGGDT-----RHDTNLNSWLKEFGITINADAVIRTVYH-KYHHPKEVLVTSGVVNREIARMTNVLSGRGKDIFARDPAADKAHGLEKDQRGLDFVFPYGATLNVKKPSAPILSSGFISFPMNRPVAAVY---SADG-----------------------------VSAPPKKCGRLAVLGSAHVFSDDWLDKEENTKLQDILFRWLLKDKEILFDAFDAG------------------------------------DPDLSDYFRLPDTQALSERLRSCMQE-GEELPK---DFTKLF----------------------DNALFTFDTS-LIPEAVALFKELGVKHE-PLTLIPPQFECPLPPLKPAVFPPILREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVKESAVI--LGILPKLDPERSDAKHV 438          
BLAST of NO01G05840 vs. NCBI_GenBank
Match: OQS01756.1 (Intraflagellar Transport Protein 52 [Achlya hypogyna])

HSP 1 Score: 161.0 bits (406), Expect = 1.200e-35
Identity = 157/562 (27.94%), Postives = 236/562 (41.99%), Query Frame = 0
Query:   58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLA---------------------LPLHDEGETQEGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
            V+FD +K E        K+L R+L K    VE+NKD DL      ++ + + +HL  FA              +  FS  E QA+  YL ++ GS+L L+ EG +       N +++N+WL+  G+  + DAV+RT  H +Y HPKEV +                      +   D    +  G E+  RG   V+PYG +L+V+ PA  ++SSG +++P +RP+ A +   S++G                                           G+  L +D WLD+E+N+ L D LF+WLL                                                    L    R+P  + ++++LR C+QE  E  P+   D  +LF                      D  LF    + L+PE +A ++ LG++ E PL LI P+  CPLPPL+PAVFPP     PPP L+QFDLD  FAS S RLA++  KC                      + DDL Y+V+E+A +   G++     +R   K V
Sbjct:   24 VMFDASKKEEFYPTAGYKKLARKL-KTTCKVEVNKD-DL------SLDRLKQAHLLVFAGV------------RERFSSSEFQALKDYL-REGGSLLFLVGEGGDQ-----RNDTNLNSWLKEFGITVNTDAVIRTVYH-KYHHPKEVLITSGVVNREIARMSNVISGRGKDIFARDPAADKAHGLEKDQRGLDFVFPYGATLNVKKPAAPILSSGFISFPMNRPIAAVY---SADG-----------------------------VSAPPKKCGRLAVLGSTHLFSDDWLDKEENSKLQDILFRWLLKDKDILFDAFDAG------------------------------------DPDLSDYFRLPDTQALSERLRSCMQE-GEELPK---DFTKLF----------------------DNSLFKFDTS-LIPEAVALFKDLGVKHE-PLTLIPPQFECPLPPLKPAVFPPILREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVKESAVI--LGILPKLDPERSDAKHV 438          
BLAST of NO01G05840 vs. NCBI_GenBank
Match: XP_002895569.1 (Intraflagellar Transport Protein 52 [Phytophthora infestans T30-4] >EEY55860.1 Intraflagellar Transport Protein 52 [Phytophthora infestans T30-4])

HSP 1 Score: 160.2 bits (404), Expect = 2.000e-35
Identity = 158/545 (28.99%), Postives = 232/545 (42.57%), Query Frame = 0
Query:   58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLAL------------PLHDEGETQEGGEEE-----GG------RGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEV 577
            VLFD +K E       LK+L R+L K    V++NKD DL      +  + + + +  FA              +  FS  E   +  +L+   GSILL+L EG E      +  +++N WL+  G+  + DAV+RT  H +Y HPKEV ++              L+   +    G E      GG      +G + VYPYG +L+V+ PA  L+SSG ++YP +RP++AAW+    EGG+                                         G+A+   D W+D+E+NA L + +F+WLL                                                    L   +R+P  + ++ +LR C+QE +E  P+   D  RLF                      D  LF    + L+PE +  YR LG++ E PL LI P+  CPLPPL+ AVFPP+    PPP L+QFDLD  FAS S RLA++  KC                      + DDL Y+VRE+A++
Sbjct:   18 VLFDASKKEQFYPTSGLKKLARKL-KPLCRVDVNKD-DL------SRDRIKDASVLVFAGV------------RERFSSTEFATLKDFLN-SGGSILLMLGEGGEQ-----TFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLISSGVVNRELARMVNVLYGRKDLLVAGRESKPLGPGGALEKDQKGLTFVYPYGATLTVKKPAAPLLSSGFISYPVNRPVVAAWQ----EGGV----------------------------AGPASKSGRLIVFGSAQCFVDEWIDKEENAKLQEIIFRWLLKDKSISLNHQDAE------------------------------------DPDLNEYVRLPDTQALSDRLRSCMQE-SEDLPK---DFTRLF----------------------DDSLFKFDTS-LIPEAVNLYRELGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVRESADI 417          
BLAST of NO01G05840 vs. NCBI_GenBank
Match: XP_024579902.1 (intraflagellar transport protein 52 homolog [Plasmopara halstedii] >CEG43533.1 intraflagellar transport protein 52 homolog [Plasmopara halstedii])

HSP 1 Score: 159.5 bits (402), Expect = 3.400e-35
Identity = 158/564 (28.01%), Postives = 236/564 (41.84%), Query Frame = 0
Query:   58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLALPLHDEGETQ-----------------------EGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRV 596
            VLFD +K E       LK+L RRL K    V++NKD DL      +  + + +++  FA              +  FS  E   +  +L    GSILL+L EG E         +++N WL+  G+  + DAV+RT  H +Y HPKEV ++  + +   T+                       +G  E+  +G S VYPYG +L+V+ PA  L+SSGS++YP +RP+ AAW+    E G+                                         G+ +   D W+D+E+NA L + +F+WLL                                                    L   +R+P  + ++ +LR C+QE +E  P+   D  RLF                      D  LF    + L+PE +  Y  LG++ E PL LI P+  CPLPPL+ AVFPP+    PPP L+QFDLD  FAS + RLA++  KC                      + +DL Y+VRE+A++   G+M     +R   K +
Sbjct:   16 VLFDASKKEQFYPASGLKKLARRL-KPLCRVDVNKD-DL------SRDRIKDANVLVFAGV------------RERFSSTEFATLKDFL-SSGGSILLMLGEGGEQ-----QFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLVSRGVVNRELTRMANELFSRKDVLMSGRDLKVTGSDGAPEKDQKGLSFVYPYGATLNVKKPAATLLSSGSVSYPVNRPVAAAWQ----ERGV----------------------------AAPASKSGRLIVFGSTQCFVDEWIDKEENAKLQEIIFRWLLKDKTINLNHQDAE------------------------------------DPDLNEYVRLPDTQALSDRLRSCMQE-SEELPK---DFTRLF----------------------DDSLFKFDTS-LIPEAVNLYHDLGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASETLRLAQLTNKC----------------------SDEDLEYYVRESADI--LGIMPRLNPERSDAKHI 432          
BLAST of NO01G05840 vs. NCBI_GenBank
Match: OQS05865.1 (Intraflagellar Transport Protein 52 [Thraustotheca clavata])

HSP 1 Score: 159.5 bits (402), Expect = 3.400e-35
Identity = 151/543 (27.81%), Postives = 227/543 (41.80%), Query Frame = 0
Query:   58 VLFDYTKGEN---CQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAXXXXXXXXXXLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLALPL---------------------HDEGETQEGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAELLADAWLDQEDNALLADALFQWLLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGXXXXXXXXXXXXXXEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEV 577
            V+FD +K E        K+L R+L K    VE+NKD DL      ++++ + +HL  FA              +  FS  E QA+  Y+ ++ GSIL L+ EG +       N +++N+WL+  G+  + DAV+RT  H +Y HPKEV +   +                      D    +  G E+  RG   V+PYG +L+V+ P+  ++SSG +++P +RP+ A +   SS+G                                           G+  + +D W D+E+N  L D LF+WLL                                                    L    R+P  + ++++LR C+QE  E  P+D   L    LF                        F ++   L+PE +A ++ LG++ E PL LI P+  CPLPPLRPAVFPP     PPP L+QFDLD  FAS S RLA++  KC                      + DDL Y+V+E+A +
Sbjct:   24 VMFDASKKEEFYPTAGYKKLARKL-KTSCKVEVNKD-DL------SLERLKQAHLLVFAGV------------RERFSSSEFQALKDYM-REGGSILFLVGEGGDQ-----RNDTNLNSWLKEFGITVNTDAVIRTVYH-KYHHPKEVLITSGIVNREIARMSNIISGRGKDIFARDPAADKAHGLEKDQRGLDFVFPYGATLNVKKPSAPILSSGFISFPMNRPVGAVY---SSDG-----------------------------VSAPPKKCGRLAVLGSTHIFSDDWYDKEENTKLQDILFRWLLKDKDILFDPFDAE------------------------------------DPDLSDYFRLPDTQALSERLRSCMQE-GEELPKDFTKLFDNTLFK-----------------------FDIS---LIPEAVALFKELGVKHE-PLTLIPPQFECPLPPLRPAVFPPILREPPPPALDQFDLDEHFASESLRLAQLTNKC----------------------SDDDLEYYVKESAVI 421          
The following BLAST results are available for this feature:
BLAST of NO01G05840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22806.16.000e-10149.64intraflagellar transport protein 52 [Nannochlorops... [more]
XP_005853911.11.600e-5341.78intraflagellar transport protein 52, partial [Nann... [more]
ETK82527.14.000e-3628.72hypothetical protein L915_12105 [Phytophthora para... [more]
XP_008908713.14.000e-3628.72hypothetical protein PPTG_13977 [Phytophthora para... [more]
ETI42505.15.200e-3628.72hypothetical protein F443_12383 [Phytophthora para... [more]
XP_008620805.18.900e-3627.94hypothetical protein SDRG_16376 [Saprolegnia dicli... [more]
OQS01756.11.200e-3527.94Intraflagellar Transport Protein 52 [Achlya hypogy... [more]
XP_002895569.12.000e-3528.99Intraflagellar Transport Protein 52 [Phytophthora ... [more]
XP_024579902.13.400e-3528.01intraflagellar transport protein 52 homolog [Plasm... [more]
OQS05865.13.400e-3527.81Intraflagellar Transport Protein 52 [Thraustotheca... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL001nonsL001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05840.2NO01G05840.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05840.1NO01G05840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05840.2NO01G05840.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05840.1NO01G05840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05840 ID=NO01G05840|Name=NO01G05840|organism=Nannochloropsis oceanica|type=gene|length=3593bp
ATGGTGCTGCGGCAGGAGGAGACAGCGGGAGGCGGTCGACGGCACAGCAG
CAGCAGCCGCGGCATAACCAGCAGCAACAGCAGGAATAGCAACGCCAATG
ACAGAATAAAGGCATCTGCGACGCTCTACCACCAGGAGgtaaggaatgag
tgagggaaggaaggagggagagaggctcatcaaggcagcctgctgaactt
ttccatcccatgactacagCATCCGCCGCCGTCACGTCCTCAACCACCAT
TCGTGCTATTTGATTACACCAAGGGTGAAAATTGCCAAACCCTGAAACGG
CTTTTTCGGCGTCTACGGAAAGCAGGCGTCCACGTCGAGATgtatgtgac
gggaagggaggaaatgggaaaatgaagaagggaaggaggcagacaaggtg
acaaaacgctaaccttcccggtgtaccgcgcgttgaaaaggaagagggca
ctggcatgggcaaaatgtagtatctttttttatcgtttccctccgtatga
agccaccggagaaggtccatacggaggaaagggggggggaagggggcgca
ggcagacaaggttacaaggcactgacccccccttccccccattgaccatt
acagCAACAAGGATATAGACCTCCCATCCCTACTCAATCCAGCTGTGCAG
CAGCATCAATCGAGCCACCTCCGACCCTTTGCACCCCCACCTCCGCCACC
ATCCCTCCTCGTTTTGGCCTGTCCCCAGGGGCCCTTTTCCTTCCAAGAGg
taggtctacgtcatcaatcaattgagggaaggaagaaaagaccgattgat
ggagggtgggtagcatcaaacacttctcccttcgctctctcgtgccatgt
cgtgctgtcagcgtccatcaagatagcaaagctaattgccaacccctccc
cgcttcctcgctccctccaacctcagCGACAAGCCATCGCCCGATATCTG
CACCAGCAAAAAGGAAGCATCCTTCTCCTTCTCTCCGAAGGTTGGGAAAC
CATCACTAGCAGCGGCAGCAACACCAGCAGTGTGAACGCCTGGCTGCAGC
CTCTTGGCCTCCACGCTCATGATGACGCCGTCCTTCGCACCCGCCGTCAC
CCCCGCTATCCACACCCCAAAGAGGTTTTCCTCGCCCTCCCTTTACACGA
TGAGGGAGAGACGCAAGAGGGAGGGGAGGAAGAAGGGGGGAGGGGCTTCT
CCCTCGTCTATCCGTACGGGTGCTCGCTCTCCGTGCAGCCTCCCGCAAAA
gtaagacgagagggagggcgagagggaaggggggaggggggcgaagcaaa
agaggcaaagacatagaatagatgcgtgtgcttgtttcaggatgggatgc
tgtctacctgtgtgttggcggtataagatgtagctgcctgaccgtcagct
gcccgaggggtggaggcatcaggagggggaagaagaagaagaaagagaag
gaaagagacattaggaggcgattaaaagacaaggccagtggcatggacat
cgagcatttcacccttggacaacccactcaccgacttatcgtccgacccc
tccctccccccctctctcccccctccctccctccacgcccctccactgaa
tgaaaccaagGCCCTCGTGTCCTCAGGCTCTCTCGCTTACCCGCCCGACC
GACCGCTTCTCGCCGCCTGGGAAGGCAGCAGCAGCGAGGGAGGGCTGGAG
GAAGGAGAGGACGCTGCTGGTACTCCTGGTGATGGTGGGGGAGGAGGAGG
AGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGCGGCTGATGGTCCTTGGGGCGGCCGAACTCTTGGCCGACGCGTGG
TTGGACCAGGAGGATAATGCCCTGCTGGCCGACGCCCTTTTTCAGgtagg
gaaggagggagagaggggaggagggaaagagggagggcggggaggcgaat
ggcaggttacaaaagcaacacatgacttacgtgagccttctcgatccccc
attcccctttccatcctttctgaccttttcctccccttttgttgatccgt
tccttccttccaaacccatccagTGGCTTCTACACAAGGACGACATCCTC
GACTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCCTCCTTCGCACCCTCTT
CTCTACCCCAATGCCCGACGCTTCCAGTGCTGCCGATGCTGCTGCAGGCC
ACCATGACCCCTCCCTTCCTCCCCCCCTCCCTTCCTCCCTCCAACCTCGG
CTCCGCGTCCCCTGCCTAAAAGATGTCGCCCAGCAACTCCGGCCTTGCCT
TCAGgtaggagacatccaggaggaacgaagtgcaggaagggtaggaaggg
agagaaagaaggaagcaaggataaatgttatctcctccactatttttatg
acgacgattttccccctcatcaacgacagGAGGACGCTGAGCCCCACCCA
CAAGACCACGCCGATCTGGCCCGCCTCTTCTTATTCTCTGCCGCCGATGG
AAAGGAAGGGCGGGAGGGAGGAGGAGGAGGGGAGGTGGGGGAAGAGGACC
CGCCGCTGTTTTCCTTGACGCCAAACGTGCTGATGCCCGAGGTGTTGGCG
ACATACAGAGCGTTAGGGCTGGAGCCCGAACAGCCGCTGAGGTTGATTGC
GCCTGAGCTCGTATGTCCGTTGCCACCCTTGCGgtaagagaggagggaat
ggaaggagggagaatcggacggaaggcaggacgaagagctgatcacaagc
aaaggttgatgctaggccggcgcgttggaccccctcgctgtggctctttt
cacctttctctcacttcattttggtcatccacacacgcataacagCCCCG
CAGTCTTCCCCCCTTCTTTCGCCGCCTTGCCTCCGCCCAAACTGGAGCAA
TTCGATCTGGACGTGGCCTTTGCCTCTCCCTCTACCCGCCTGGCCCGCGT
CCTACGCAAGTGCTGTCGGGACAAGCCGTCTGCACGGAGGAGTAGAGAAG
AGAGCGGGAGGGAGGTAGGAGTGGAGGTGGCGATGGATGACCTGGTGTAC
TTCGTGAGGGAAGCGGCGGAGGTGAGTGAGTGGGGACTGATGGGAACGAG
AAAGGGAAAGAGGGAGGGGGGGAAGAGGGTCTATGGTATCCAGCACTTTG
TCTGTAGCGTCGTCTAGGACTCATTTTCGTTCTCCTGTCACGCATCCTCC
TCGTTCCCGTCTTCAGATCGCAGGCGTGGCAATTGACTCTCCGGCCTCGC
TGCCAGCAGGTGTGCAGGGCACGGCGAAGCAGGAAGAGGGCGAAGGGGAG
GAGCAGGCCAAGCGCCTCCTTGCCGCCGTCGTAGATCAGCTCGCCCGCTG
GAAGGGAGCGGACTGGCGGACTCCGTTAGGTGACGTGTCACGTGTACCTT
GCAGTTCACGCAGCGGCCGATAAACGCGACGTCTACCAGCGAGGCGGGTT
TTGTCACTAATCGCGTGGATGTATCTTTCCCTTGTGCTGGCCTCCTTCTA
CAACGACGCAGTTCCACCGTCGTAGTTGCACTCGCTGTCTTCATTTTCCA
CATGTCCGTCACCAACAAATAATAACAACGCTTGGATCCAGCT
back to top

protein sequence of NO01G05840.2

>NO01G05840.2-protein ID=NO01G05840.2-protein|Name=NO01G05840.2|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MVLRQEETAGGGRRHSSSSRGITSSNSRNSNANDRIKASATLYHQEHPPP
SRPQPPFVLFDYTKGENCQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPA
VQQHQSSHLRPFAPPPPPPSLLVLACPQGPFSFQERQAIARYLHQQKGSI
LLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPK
EVFLALPLHDEGETQEGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGS
LAYPPDRPLLAAWEGSSSEGGLEEGEDAAGTPGDGGGGGGGGGGRGGGRG
GGGGGGGGRLMVLGAAELLADAWLDQEDNALLADALFQWLLHKDDILDSS
SSSSSSSSLLRTLFSTPMPDASSAADAAAGHHDPSLPPPLPSSLQPRLRV
PCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGKEGREGGGGGE
VGEEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLR
PAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSR
EESGREVGVEVAMDDLVYFVREAAEIAGVAIDSPASLPAGVQGTAKQEEG
EGEEQAKRLLAAVVDQLARWKGADWRTPLGDVSRVPCSSRSGR*
back to top

protein sequence of NO01G05840.1

>NO01G05840.1-protein ID=NO01G05840.1-protein|Name=NO01G05840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp
MVLRQEETAGGGRRHSSSSRGITSSNSRNSNANDRIKASATLYHQEHPPP
SRPQPPFVLFDYTKGENCQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPA
VQQHQSSHLRPFAPPPPPPSLLVLACPQGPFSFQERQAIARYLHQQKGSI
LLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPK
EVFLALPLHDEGETQEGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGS
LAYPPDRPLLAAWEGSSSEGGLEEGEDAAGTPGDGGGGGGGGGGRGGGRG
GGGGGGGGRLMVLGAAELLADAWLDQEDNALLADALFQWLLHKDDILDSS
SSSSSSSSLLRTLFSTPMPDASSAADAAAGHHDPSLPPPLPSSLQPRLRV
PCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGKEGREGGGGGE
VGEEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLR
PAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSR
EESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRVYGIQH
FVCSVV*
back to top
Synonyms
Publications