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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1640926..1644518 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05840.1 vs.
Match: EWM22806.1 (intraflagellar transport protein 52 [Nannochloropsis gaditana]) HSP 1 Score: 433.3 bits (1113), Expect = 1.200e-117 Identity = 303/603 (50.25%), Postives = 364/603 (60.36%), Query Frame = 0
Query: 15 HSSSSRGITSSNSRNSNANDRIKAS----ATLYHQEHP--PPSRPQPPFVLFDYTKGENCQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAPPPPP----PSLLVLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGW--ETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLALPLHDEGETQEGG-----EEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEEGED-----AAGTPGDGG-------GGGGGGGGRGGGRGGGGGGGGGRLMVLGAAELLADAWLDQEDNALLADALFQWLLHKDDILDSSSSSS-----------SSSSLLRTLFSTPMPDASSAADAAAGHHDPSLPPPLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGKEGREG-GGGGEVGEEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEV 577
HS S + SN+ + N + K A L +Q HP P + V+F+ KGEN Q +KRLFRRLR+AG+ V INK D+PS+L V++ Q +RP A P PSL V ACPQ F+ E QA++R+L + S+LLLLSEG S +S +N WLQP G+HAH DAVLR RRHPR+PHPKEVFL+L E E + G EEEG GFS VYPYGCSLSV PPAK L+SSG +YP RP+LAAWEG + EGED AG G+ G GG G GRGGG GGGG GGRL+VLGAA++ DAWLDQEDN LAD +F+WLLH++ +SS+ S S S L++ LF DA + A HDP+LPP SLQPRL P ++D+AQQLRPCLQ PQ H DL L G+EG G G G E+PPL++L PN L+PEVLAT+ ALGLEPE PLR +APE VCP PPLR AVFPPSFA PPP LEQFDLD FASP T+LAR+ KC SR E + E + +DL YFVREAAEV
Sbjct: 2 HSEQSGHSSQSNASSGNYSSNRKLDGCNVARLTYQPHPGQAPLEERHNHVVFNAVKGENYQNMKRLFRRLRRAGLKVTINKHSDVPSIL---VREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRA------EGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLF---CGDARPEQERA---HDPALPP----SLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCA-------SSRLEGAK----EGSREDLSYFVREAAEV 574
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05840.1 ID=NO01G05840.1|Name=NO01G05840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp ATGGTGCTGCGGCAGGAGGAGACAGCGGGAGGCGGTCGACGGCACAGCAG CAGCAGCCGCGGCATAACCAGCAGCAACAGCAGGAATAGCAACGCCAATG ACAGAATAAAGGCATCTGCGACGCTCTACCACCAGGAGCATCCGCCGCCG TCACGTCCTCAACCACCATTCGTGCTATTTGATTACACCAAGGGTGAAAA TTGCCAAACCCTGAAACGGCTTTTTCGGCGTCTACGGAAAGCAGGCGTCC ACGTCGAGATCAACAAGGATATAGACCTCCCATCCCTACTCAATCCAGCT GTGCAGCAGCATCAATCGAGCCACCTCCGACCCTTTGCACCCCCACCTCC GCCACCATCCCTCCTCGTTTTGGCCTGTCCCCAGGGGCCCTTTTCCTTCC AAGAGCGACAAGCCATCGCCCGATATCTGCACCAGCAAAAAGGAAGCATC CTTCTCCTTCTCTCCGAAGGTTGGGAAACCATCACTAGCAGCGGCAGCAA CACCAGCAGTGTGAACGCCTGGCTGCAGCCTCTTGGCCTCCACGCTCATG ATGACGCCGTCCTTCGCACCCGCCGTCACCCCCGCTATCCACACCCCAAA GAGGTTTTCCTCGCCCTCCCTTTACACGATGAGGGAGAGACGCAAGAGGG AGGGGAGGAAGAAGGGGGGAGGGGCTTCTCCCTCGTCTATCCGTACGGGT GCTCGCTCTCCGTGCAGCCTCCCGCAAAAGCCCTCGTGTCCTCAGGCTCT CTCGCTTACCCGCCCGACCGACCGCTTCTCGCCGCCTGGGAAGGCAGCAG CAGCGAGGGAGGGCTGGAGGAAGGAGAGGACGCTGCTGGTACTCCTGGTG ATGGTGGGGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGA GGAGGAGGAGGAGGAGGAGGAGGGCGGCTGATGGTCCTTGGGGCGGCCGA ACTCTTGGCCGACGCGTGGTTGGACCAGGAGGATAATGCCCTGCTGGCCG ACGCCCTTTTTCAGTGGCTTCTACACAAGGACGACATCCTCGACTCCTCC TCCTCCTCCTCCTCTTCCTCCTCCCTCCTTCGCACCCTCTTCTCTACCCC AATGCCCGACGCTTCCAGTGCTGCCGATGCTGCTGCAGGCCACCATGACC CCTCCCTTCCTCCCCCCCTCCCTTCCTCCCTCCAACCTCGGCTCCGCGTC CCCTGCCTAAAAGATGTCGCCCAGCAACTCCGGCCTTGCCTTCAGGAGGA CGCTGAGCCCCACCCACAAGACCACGCCGATCTGGCCCGCCTCTTCTTAT TCTCTGCCGCCGATGGAAAGGAAGGGCGGGAGGGAGGAGGAGGAGGGGAG GTGGGGGAAGAGGACCCGCCGCTGTTTTCCTTGACGCCAAACGTGCTGAT GCCCGAGGTGTTGGCGACATACAGAGCGTTAGGGCTGGAGCCCGAACAGC CGCTGAGGTTGATTGCGCCTGAGCTCGTATGTCCGTTGCCACCCTTGCGC CCCGCAGTCTTCCCCCCTTCTTTCGCCGCCTTGCCTCCGCCCAAACTGGA GCAATTCGATCTGGACGTGGCCTTTGCCTCTCCCTCTACCCGCCTGGCCC GCGTCCTACGCAAGTGCTGTCGGGACAAGCCGTCTGCACGGAGGAGTAGA GAAGAGAGCGGGAGGGAGGTAGGAGTGGAGGTGGCGATGGATGACCTGGT GTACTTCGTGAGGGAAGCGGCGGAGGTGAGTGAGTGGGGACTGATGGGAA CGAGAAAGGGAAAGAGGGAGGGGGGGAAGAGGGTCTATGGTATCCAGCAC TTTGTCTGTAGCGTCGTCTAGGACTCATTTTCGTTCTCCTGTCACGCATC CTCCTCGTTCCCGTCTTCAGATCGCAGGCGTGGCAATTGACTCTCCGGCC TCGCTGCCAGCAGGTGTGCAGGGCACGGCGAAGCAGGAAGAGGGCGAAGG GGAGGAGCAGGCCAAGCGCCTCCTTGCCGCCGTCGTAGATCAGCTCGCCC GCTGGAAGGGAGCGGACTGGCGGACTCCGTTAGGTGACGTGTCACGTGTA CCTTGCAGTTCACGCAGCGGCCGATAAACGCGACGTCTACCAGCGAGGCG GGTTTTGTCACTAATCGCGTGGATGTATCTTTCCCTTGTGCTGGCCTCCT TCTACAACGACGCAGTTCCACCGTCGTAGTTGCACTCGCTGTCTTCATTT TCCACATGTCCGTCACCAACAAATAATAACAACGCTTGGATCCAGCT back to topprotein sequence of NO01G05840.1 >NO01G05840.1-protein ID=NO01G05840.1-protein|Name=NO01G05840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp MVLRQEETAGGGRRHSSSSRGITSSNSRNSNANDRIKASATLYHQEHPPP SRPQPPFVLFDYTKGENCQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPA VQQHQSSHLRPFAPPPPPPSLLVLACPQGPFSFQERQAIARYLHQQKGSI LLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPK EVFLALPLHDEGETQEGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGS LAYPPDRPLLAAWEGSSSEGGLEEGEDAAGTPGDGGGGGGGGGGRGGGRG GGGGGGGGRLMVLGAAELLADAWLDQEDNALLADALFQWLLHKDDILDSS SSSSSSSSLLRTLFSTPMPDASSAADAAAGHHDPSLPPPLPSSLQPRLRV PCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGKEGREGGGGGE VGEEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLR PAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSR EESGREVGVEVAMDDLVYFVREAAEVSEWGLMGTRKGKREGGKRVYGIQH FVCSVV* back to topmRNA from alignment at chr1:1640926..1644518- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05840.1 ID=NO01G05840.1|Name=NO01G05840.1|organism=Nannochloropsis oceanica|type=mRNA|length=3593bp|location=Sequence derived from alignment at chr1:1640926..1644518- (Nannochloropsis oceanica) ATGGTGCTGCGGCAGGAGGAGACAGCGGGAGGCGGTCGACGGCACAGCAG
CAGCAGCCGCGGCATAACCAGCAGCAACAGCAGGAATAGCAACGCCAATG
ACAGAATAAAGGCATCTGCGACGCTCTACCACCAGGAGGTAAGGAATGAG
TGAGGGAAGGAAGGAGGGAGAGAGGCTCATCAAGGCAGCCTGCTGAACTT
TTCCATCCCATGACTACAGCATCCGCCGCCGTCACGTCCTCAACCACCAT
TCGTGCTATTTGATTACACCAAGGGTGAAAATTGCCAAACCCTGAAACGG
CTTTTTCGGCGTCTACGGAAAGCAGGCGTCCACGTCGAGATGTATGTGAC
GGGAAGGGAGGAAATGGGAAAATGAAGAAGGGAAGGAGGCAGACAAGGTG
ACAAAACGCTAACCTTCCCGGTGTACCGCGCGTTGAAAAGGAAGAGGGCA
CTGGCATGGGCAAAATGTAGTATCTTTTTTTATCGTTTCCCTCCGTATGA
AGCCACCGGAGAAGGTCCATACGGAGGAAAGGGGGGGGGAAGGGGGCGCA
GGCAGACAAGGTTACAAGGCACTGACCCCCCCTTCCCCCCATTGACCATT
ACAGCAACAAGGATATAGACCTCCCATCCCTACTCAATCCAGCTGTGCAG
CAGCATCAATCGAGCCACCTCCGACCCTTTGCACCCCCACCTCCGCCACC
ATCCCTCCTCGTTTTGGCCTGTCCCCAGGGGCCCTTTTCCTTCCAAGAGG
TAGGTCTACGTCATCAATCAATTGAGGGAAGGAAGAAAAGACCGATTGAT
GGAGGGTGGGTAGCATCAAACACTTCTCCCTTCGCTCTCTCGTGCCATGT
CGTGCTGTCAGCGTCCATCAAGATAGCAAAGCTAATTGCCAACCCCTCCC
CGCTTCCTCGCTCCCTCCAACCTCAGCGACAAGCCATCGCCCGATATCTG
CACCAGCAAAAAGGAAGCATCCTTCTCCTTCTCTCCGAAGGTTGGGAAAC
CATCACTAGCAGCGGCAGCAACACCAGCAGTGTGAACGCCTGGCTGCAGC
CTCTTGGCCTCCACGCTCATGATGACGCCGTCCTTCGCACCCGCCGTCAC
CCCCGCTATCCACACCCCAAAGAGGTTTTCCTCGCCCTCCCTTTACACGA
TGAGGGAGAGACGCAAGAGGGAGGGGAGGAAGAAGGGGGGAGGGGCTTCT
CCCTCGTCTATCCGTACGGGTGCTCGCTCTCCGTGCAGCCTCCCGCAAAA
GTAAGACGAGAGGGAGGGCGAGAGGGAAGGGGGGAGGGGGGCGAAGCAAA
AGAGGCAAAGACATAGAATAGATGCGTGTGCTTGTTTCAGGATGGGATGC
TGTCTACCTGTGTGTTGGCGGTATAAGATGTAGCTGCCTGACCGTCAGCT
GCCCGAGGGGTGGAGGCATCAGGAGGGGGAAGAAGAAGAAGAAAGAGAAG
GAAAGAGACATTAGGAGGCGATTAAAAGACAAGGCCAGTGGCATGGACAT
CGAGCATTTCACCCTTGGACAACCCACTCACCGACTTATCGTCCGACCCC
TCCCTCCCCCCCTCTCTCCCCCCTCCCTCCCTCCACGCCCCTCCACTGAA
TGAAACCAAGGCCCTCGTGTCCTCAGGCTCTCTCGCTTACCCGCCCGACC
GACCGCTTCTCGCCGCCTGGGAAGGCAGCAGCAGCGAGGGAGGGCTGGAG
GAAGGAGAGGACGCTGCTGGTACTCCTGGTGATGGTGGGGGAGGAGGAGG
AGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGCGGCTGATGGTCCTTGGGGCGGCCGAACTCTTGGCCGACGCGTGG
TTGGACCAGGAGGATAATGCCCTGCTGGCCGACGCCCTTTTTCAGGTAGG
GAAGGAGGGAGAGAGGGGAGGAGGGAAAGAGGGAGGGCGGGGAGGCGAAT
GGCAGGTTACAAAAGCAACACATGACTTACGTGAGCCTTCTCGATCCCCC
ATTCCCCTTTCCATCCTTTCTGACCTTTTCCTCCCCTTTTGTTGATCCGT
TCCTTCCTTCCAAACCCATCCAGTGGCTTCTACACAAGGACGACATCCTC
GACTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCCTCCTTCGCACCCTCTT
CTCTACCCCAATGCCCGACGCTTCCAGTGCTGCCGATGCTGCTGCAGGCC
ACCATGACCCCTCCCTTCCTCCCCCCCTCCCTTCCTCCCTCCAACCTCGG
CTCCGCGTCCCCTGCCTAAAAGATGTCGCCCAGCAACTCCGGCCTTGCCT
TCAGGTAGGAGACATCCAGGAGGAACGAAGTGCAGGAAGGGTAGGAAGGG
AGAGAAAGAAGGAAGCAAGGATAAATGTTATCTCCTCCACTATTTTTATG
ACGACGATTTTCCCCCTCATCAACGACAGGAGGACGCTGAGCCCCACCCA
CAAGACCACGCCGATCTGGCCCGCCTCTTCTTATTCTCTGCCGCCGATGG
AAAGGAAGGGCGGGAGGGAGGAGGAGGAGGGGAGGTGGGGGAAGAGGACC
CGCCGCTGTTTTCCTTGACGCCAAACGTGCTGATGCCCGAGGTGTTGGCG
ACATACAGAGCGTTAGGGCTGGAGCCCGAACAGCCGCTGAGGTTGATTGC
GCCTGAGCTCGTATGTCCGTTGCCACCCTTGCGGTAAGAGAGGAGGGAAT
GGAAGGAGGGAGAATCGGACGGAAGGCAGGACGAAGAGCTGATCACAAGC
AAAGGTTGATGCTAGGCCGGCGCGTTGGACCCCCTCGCTGTGGCTCTTTT
CACCTTTCTCTCACTTCATTTTGGTCATCCACACACGCATAACAGCCCCG
CAGTCTTCCCCCCTTCTTTCGCCGCCTTGCCTCCGCCCAAACTGGAGCAA
TTCGATCTGGACGTGGCCTTTGCCTCTCCCTCTACCCGCCTGGCCCGCGT
CCTACGCAAGTGCTGTCGGGACAAGCCGTCTGCACGGAGGAGTAGAGAAG
AGAGCGGGAGGGAGGTAGGAGTGGAGGTGGCGATGGATGACCTGGTGTAC
TTCGTGAGGGAAGCGGCGGAGGTGAGTGAGTGGGGACTGATGGGAACGAG
AAAGGGAAAGAGGGAGGGGGGGAAGAGGGTCTATGGTATCCAGCACTTTG
TCTGTAGCGTCGTCTAGGACTCATTTTCGTTCTCCTGTCACGCATCCTCC
TCGTTCCCGTCTTCAGATCGCAGGCGTGGCAATTGACTCTCCGGCCTCGC
TGCCAGCAGGTGTGCAGGGCACGGCGAAGCAGGAAGAGGGCGAAGGGGAG
GAGCAGGCCAAGCGCCTCCTTGCCGCCGTCGTAGATCAGCTCGCCCGCTG
GAAGGGAGCGGACTGGCGGACTCCGTTAGGTGACGTGTCACGTGTACCTT
GCAGTTCACGCAGCGGCCGATAAACGCGACGTCTACCAGCGAGGCGGGTT
TTGTCACTAATCGCGTGGATGTATCTTTCCCTTGTGCTGGCCTCCTTCTA
CAACGACGCAGTTCCACCGTCGTAGTTGCACTCGCTGTCTTCATTTTCCA
CATGTCCGTCACCAACAAATAATAACAACGCTTGGATCCAGCT back to topCoding sequence (CDS) from alignment at chr1:1640926..1644518- >NO01G05840.1 ID=NO01G05840.1|Name=NO01G05840.1|organism=Nannochloropsis oceanica|type=CDS|length=1821bp|location=Sequence derived from alignment at chr1:1640926..1644518- (Nannochloropsis oceanica) ATGGTGCTGCGGCAGGAGGAGACAGCGGGAGGCGGTCGACGGCACAGCAG CAGCAGCCGCGGCATAACCAGCAGCAACAGCAGGAATAGCAACGCCAATG ACAGAATAAAGGCATCTGCGACGCTCTACCACCAGGAGCATCCGCCGCCG TCACGTCCTCAACCACCATTCGTGCTATTTGATTACACCAAGGGTGAAAA TTGCCAAACCCTGAAACGGCTTTTTCGGCGTCTACGGAAAGCAGGCGTCC ACGTCGAGATCAACAAGGATATAGACCTCCCATCCCTACTCAATCCAGCT GTGCAGCAGCATCAATCGAGCCACCTCCGACCCTTTGCACCCCCACCTCC GCCACCATCCCTCCTCGTTTTGGCCTGTCCCCAGGGGCCCTTTTCCTTCC AAGAGCGACAAGCCATCGCCCGATATCTGCACCAGCAAAAAGGAAGCATC CTTCTCCTTCTCTCCGAAGGTTGGGAAACCATCACTAGCAGCGGCAGCAA CACCAGCAGTGTGAACGCCTGGCTGCAGCCTCTTGGCCTCCACGCTCATG ATGACGCCGTCCTTCGCACCCGCCGTCACCCCCGCTATCCACACCCCAAA GAGGTTTTCCTCGCCCTCCCTTTACACGATGAGGGAGAGACGCAAGAGGG AGGGGAGGAAGAAGGGGGGAGGGGCTTCTCCCTCGTCTATCCGTACGGGT GCTCGCTCTCCGTGCAGCCTCCCGCAAAAGCCCTCGTGTCCTCAGGCTCT CTCGCTTACCCGCCCGACCGACCGCTTCTCGCCGCCTGGGAAGGCAGCAG CAGCGAGGGAGGGCTGGAGGAAGGAGAGGACGCTGCTGGTACTCCTGGTG ATGGTGGGGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGA GGAGGAGGAGGAGGAGGAGGAGGGCGGCTGATGGTCCTTGGGGCGGCCGA ACTCTTGGCCGACGCGTGGTTGGACCAGGAGGATAATGCCCTGCTGGCCG ACGCCCTTTTTCAGTGGCTTCTACACAAGGACGACATCCTCGACTCCTCC TCCTCCTCCTCCTCTTCCTCCTCCCTCCTTCGCACCCTCTTCTCTACCCC AATGCCCGACGCTTCCAGTGCTGCCGATGCTGCTGCAGGCCACCATGACC CCTCCCTTCCTCCCCCCCTCCCTTCCTCCCTCCAACCTCGGCTCCGCGTC CCCTGCCTAAAAGATGTCGCCCAGCAACTCCGGCCTTGCCTTCAGGAGGA CGCTGAGCCCCACCCACAAGACCACGCCGATCTGGCCCGCCTCTTCTTAT TCTCTGCCGCCGATGGAAAGGAAGGGCGGGAGGGAGGAGGAGGAGGGGAG GTGGGGGAAGAGGACCCGCCGCTGTTTTCCTTGACGCCAAACGTGCTGAT GCCCGAGGTGTTGGCGACATACAGAGCGTTAGGGCTGGAGCCCGAACAGC CGCTGAGGTTGATTGCGCCTGAGCTCGTATGTCCGTTGCCACCCTTGCGC CCCGCAGTCTTCCCCCCTTCTTTCGCCGCCTTGCCTCCGCCCAAACTGGA GCAATTCGATCTGGACGTGGCCTTTGCCTCTCCCTCTACCCGCCTGGCCC GCGTCCTACGCAAGTGCTGTCGGGACAAGCCGTCTGCACGGAGGAGTAGA GAAGAGAGCGGGAGGGAGGTAGGAGTGGAGGTGGCGATGGATGACCTGGT GTACTTCGTGAGGGAAGCGGCGGAGGTGAGTGAGTGGGGACTGATGGGAA CGAGAAAGGGAAAGAGGGAGGGGGGGAAGAGGGTCTATGGTATCCAGCAC TTTGTCTGTAGCGTCGTCTAG back to top
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