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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:1640926..1644563 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05840.2 vs.
Match: EWM22806.1 (intraflagellar transport protein 52 [Nannochloropsis gaditana]) HSP 1 Score: 434.1 bits (1115), Expect = 7.500e-118 Identity = 303/605 (50.08%), Postives = 365/605 (60.33%), Query Frame = 0
Query: 15 HSSSSRGITSSNSRNSNANDRIKAS----ATLYHQEHP--PPSRPQPPFVLFDYTKGENCQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPAVQQHQSSHLRPFAPPPPP----PSLLVLACPQGPFSFQERQAIARYLHQQKGSILLLLSEGW--ETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPKEVFLALPLHDEGETQEGG-----EEEGGRGFSLVYPYGCSLSVQPPAKALVSSGSLAYPPDRPLLAAWEGSSSEGGLEEGED-----AAGTPGDGG-------GGGGGGGGRGGGRGGGGGGGGGRLMVLGAAELLADAWLDQEDNALLADALFQWLLHKDDILDSSSSSS-----------SSSSLLRTLFSTPMPDASSAADAAAGHHDPSLPPPLPSSLQPRLRVPCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGKEGREG-GGGGEVGEEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLRPAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSREESGREVGVEVAMDDLVYFVREAAEIAG 579
HS S + SN+ + N + K A L +Q HP P + V+F+ KGEN Q +KRLFRRLR+AG+ V INK D+PS+L V++ Q +RP A P PSL V ACPQ F+ E QA++R+L + S+LLLLSEG S +S +N WLQP G+HAH DAVLR RRHPR+PHPKEVFL+L E E + G EEEG GFS VYPYGCSLSV PPAK L+SSG +YP RP+LAAWEG + EGED AG G+ G GG G GRGGG GGGG GGRL+VLGAA++ DAWLDQEDN LAD +F+WLLH++ +SS+ S S S L++ LF DA + A HDP+LPP SLQPRL P ++D+AQQLRPCLQ PQ H DL L G+EG G G G E+PPL++L PN L+PEVLAT+ ALGLEPE PLR +APE VCP PPLR AVFPPSFA PPP LEQFDLD FASP T+LAR+ KC SR E + E + +DL YFVREAAE+ G
Sbjct: 2 HSEQSGHSSQSNASSGNYSSNRKLDGCNVARLTYQPHPGQAPLEERHNHVVFNAVKGENYQNMKRLFRRLRRAGLKVTINKHSDVPSIL---VREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRA------EGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLF---CGDARPEQERA---HDPALPP----SLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCA-------SSRLEGAK----EGSREDLSYFVREAAEVRG 576
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05840.2 ID=NO01G05840.2|Name=NO01G05840.2|organism=Nannochloropsis oceanica|type=mRNA|length=2147bp
AAACACAGCCAGCAGAAGACAACACGCCGGGTCGTCATCCTACCTATGGT
GCTGCGGCAGGAGGAGACAGCGGGAGGCGGTCGACGGCACAGCAGCAGCA
GCCGCGGCATAACCAGCAGCAACAGCAGGAATAGCAACGCCAATGACAGA
ATAAAGGCATCTGCGACGCTCTACCACCAGGAGCATCCGCCGCCGTCACG
TCCTCAACCACCATTCGTGCTATTTGATTACACCAAGGGTGAAAATTGCC
AAACCCTGAAACGGCTTTTTCGGCGTCTACGGAAAGCAGGCGTCCACGTC
GAGATCAACAAGGATATAGACCTCCCATCCCTACTCAATCCAGCTGTGCA
GCAGCATCAATCGAGCCACCTCCGACCCTTTGCACCCCCACCTCCGCCAC
CATCCCTCCTCGTTTTGGCCTGTCCCCAGGGGCCCTTTTCCTTCCAAGAG
CGACAAGCCATCGCCCGATATCTGCACCAGCAAAAAGGAAGCATCCTTCT
CCTTCTCTCCGAAGGTTGGGAAACCATCACTAGCAGCGGCAGCAACACCA
GCAGTGTGAACGCCTGGCTGCAGCCTCTTGGCCTCCACGCTCATGATGAC
GCCGTCCTTCGCACCCGCCGTCACCCCCGCTATCCACACCCCAAAGAGGT
TTTCCTCGCCCTCCCTTTACACGATGAGGGAGAGACGCAAGAGGGAGGGG
AGGAAGAAGGGGGGAGGGGCTTCTCCCTCGTCTATCCGTACGGGTGCTCG
CTCTCCGTGCAGCCTCCCGCAAAAGCCCTCGTGTCCTCAGGCTCTCTCGC
TTACCCGCCCGACCGACCGCTTCTCGCCGCCTGGGAAGGCAGCAGCAGCG
AGGGAGGGCTGGAGGAAGGAGAGGACGCTGCTGGTACTCCTGGTGATGGT
GGGGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGG
AGGAGGAGGAGGAGGAGGGCGGCTGATGGTCCTTGGGGCGGCCGAACTCT
TGGCCGACGCGTGGTTGGACCAGGAGGATAATGCCCTGCTGGCCGACGCC
CTTTTTCAGTGGCTTCTACACAAGGACGACATCCTCGACTCCTCCTCCTC
CTCCTCCTCTTCCTCCTCCCTCCTTCGCACCCTCTTCTCTACCCCAATGC
CCGACGCTTCCAGTGCTGCCGATGCTGCTGCAGGCCACCATGACCCCTCC
CTTCCTCCCCCCCTCCCTTCCTCCCTCCAACCTCGGCTCCGCGTCCCCTG
CCTAAAAGATGTCGCCCAGCAACTCCGGCCTTGCCTTCAGGAGGACGCTG
AGCCCCACCCACAAGACCACGCCGATCTGGCCCGCCTCTTCTTATTCTCT
GCCGCCGATGGAAAGGAAGGGCGGGAGGGAGGAGGAGGAGGGGAGGTGGG
GGAAGAGGACCCGCCGCTGTTTTCCTTGACGCCAAACGTGCTGATGCCCG
AGGTGTTGGCGACATACAGAGCGTTAGGGCTGGAGCCCGAACAGCCGCTG
AGGTTGATTGCGCCTGAGCTCGTATGTCCGTTGCCACCCTTGCGCCCCGC
AGTCTTCCCCCCTTCTTTCGCCGCCTTGCCTCCGCCCAAACTGGAGCAAT
TCGATCTGGACGTGGCCTTTGCCTCTCCCTCTACCCGCCTGGCCCGCGTC
CTACGCAAGTGCTGTCGGGACAAGCCGTCTGCACGGAGGAGTAGAGAAGA
GAGCGGGAGGGAGGTAGGAGTGGAGGTGGCGATGGATGACCTGGTGTACT
TCGTGAGGGAAGCGGCGGAGATCGCAGGCGTGGCAATTGACTCTCCGGCC
TCGCTGCCAGCAGGTGTGCAGGGCACGGCGAAGCAGGAAGAGGGCGAAGG
GGAGGAGCAGGCCAAGCGCCTCCTTGCCGCCGTCGTAGATCAGCTCGCCC
GCTGGAAGGGAGCGGACTGGCGGACTCCGTTAGGTGACGTGTCACGTGTA
CCTTGCAGTTCACGCAGCGGCCGATAAACGCGACGTCTACCAGCGAGGCG
GGTTTTGTCACTAATCGCGTGGATGTATCTTTCCCTTGTGCTGGCCTCCT
TCTACAACGACGCAGTTCCACCGTCGTAGTTGCACTCGCTGTCTTCATTT
TCCACATGTCCGTCACCAACAAATAATAACAACGCTTGGATCCAGCT back to topprotein sequence of NO01G05840.2 >NO01G05840.2-protein ID=NO01G05840.2-protein|Name=NO01G05840.2|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MVLRQEETAGGGRRHSSSSRGITSSNSRNSNANDRIKASATLYHQEHPPP
SRPQPPFVLFDYTKGENCQTLKRLFRRLRKAGVHVEINKDIDLPSLLNPA
VQQHQSSHLRPFAPPPPPPSLLVLACPQGPFSFQERQAIARYLHQQKGSI
LLLLSEGWETITSSGSNTSSVNAWLQPLGLHAHDDAVLRTRRHPRYPHPK
EVFLALPLHDEGETQEGGEEEGGRGFSLVYPYGCSLSVQPPAKALVSSGS
LAYPPDRPLLAAWEGSSSEGGLEEGEDAAGTPGDGGGGGGGGGGRGGGRG
GGGGGGGGRLMVLGAAELLADAWLDQEDNALLADALFQWLLHKDDILDSS
SSSSSSSSLLRTLFSTPMPDASSAADAAAGHHDPSLPPPLPSSLQPRLRV
PCLKDVAQQLRPCLQEDAEPHPQDHADLARLFLFSAADGKEGREGGGGGE
VGEEDPPLFSLTPNVLMPEVLATYRALGLEPEQPLRLIAPELVCPLPPLR
PAVFPPSFAALPPPKLEQFDLDVAFASPSTRLARVLRKCCRDKPSARRSR
EESGREVGVEVAMDDLVYFVREAAEIAGVAIDSPASLPAGVQGTAKQEEG
EGEEQAKRLLAAVVDQLARWKGADWRTPLGDVSRVPCSSRSGR* back to topmRNA from alignment at chr1:1640926..1644563- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05840.2 ID=NO01G05840.2|Name=NO01G05840.2|organism=Nannochloropsis oceanica|type=mRNA|length=3638bp|location=Sequence derived from alignment at chr1:1640926..1644563- (Nannochloropsis oceanica)
AAACACAGCCAGCAGAAGACAACACGCCGGGTCGTCATCCTACCTATGGT
GCTGCGGCAGGAGGAGACAGCGGGAGGCGGTCGACGGCACAGCAGCAGCA
GCCGCGGCATAACCAGCAGCAACAGCAGGAATAGCAACGCCAATGACAGA
ATAAAGGCATCTGCGACGCTCTACCACCAGGAGGTAAGGAATGAGTGAGG
GAAGGAAGGAGGGAGAGAGGCTCATCAAGGCAGCCTGCTGAACTTTTCCA
TCCCATGACTACAGCATCCGCCGCCGTCACGTCCTCAACCACCATTCGTG
CTATTTGATTACACCAAGGGTGAAAATTGCCAAACCCTGAAACGGCTTTT
TCGGCGTCTACGGAAAGCAGGCGTCCACGTCGAGATGTATGTGACGGGAA
GGGAGGAAATGGGAAAATGAAGAAGGGAAGGAGGCAGACAAGGTGACAAA
ACGCTAACCTTCCCGGTGTACCGCGCGTTGAAAAGGAAGAGGGCACTGGC
ATGGGCAAAATGTAGTATCTTTTTTTATCGTTTCCCTCCGTATGAAGCCA
CCGGAGAAGGTCCATACGGAGGAAAGGGGGGGGGAAGGGGGCGCAGGCAG
ACAAGGTTACAAGGCACTGACCCCCCCTTCCCCCCATTGACCATTACAGC
AACAAGGATATAGACCTCCCATCCCTACTCAATCCAGCTGTGCAGCAGCA
TCAATCGAGCCACCTCCGACCCTTTGCACCCCCACCTCCGCCACCATCCC
TCCTCGTTTTGGCCTGTCCCCAGGGGCCCTTTTCCTTCCAAGAGGTAGGT
CTACGTCATCAATCAATTGAGGGAAGGAAGAAAAGACCGATTGATGGAGG
GTGGGTAGCATCAAACACTTCTCCCTTCGCTCTCTCGTGCCATGTCGTGC
TGTCAGCGTCCATCAAGATAGCAAAGCTAATTGCCAACCCCTCCCCGCTT
CCTCGCTCCCTCCAACCTCAGCGACAAGCCATCGCCCGATATCTGCACCA
GCAAAAAGGAAGCATCCTTCTCCTTCTCTCCGAAGGTTGGGAAACCATCA
CTAGCAGCGGCAGCAACACCAGCAGTGTGAACGCCTGGCTGCAGCCTCTT
GGCCTCCACGCTCATGATGACGCCGTCCTTCGCACCCGCCGTCACCCCCG
CTATCCACACCCCAAAGAGGTTTTCCTCGCCCTCCCTTTACACGATGAGG
GAGAGACGCAAGAGGGAGGGGAGGAAGAAGGGGGGAGGGGCTTCTCCCTC
GTCTATCCGTACGGGTGCTCGCTCTCCGTGCAGCCTCCCGCAAAAGTAAG
ACGAGAGGGAGGGCGAGAGGGAAGGGGGGAGGGGGGCGAAGCAAAAGAGG
CAAAGACATAGAATAGATGCGTGTGCTTGTTTCAGGATGGGATGCTGTCT
ACCTGTGTGTTGGCGGTATAAGATGTAGCTGCCTGACCGTCAGCTGCCCG
AGGGGTGGAGGCATCAGGAGGGGGAAGAAGAAGAAGAAAGAGAAGGAAAG
AGACATTAGGAGGCGATTAAAAGACAAGGCCAGTGGCATGGACATCGAGC
ATTTCACCCTTGGACAACCCACTCACCGACTTATCGTCCGACCCCTCCCT
CCCCCCCTCTCTCCCCCCTCCCTCCCTCCACGCCCCTCCACTGAATGAAA
CCAAGGCCCTCGTGTCCTCAGGCTCTCTCGCTTACCCGCCCGACCGACCG
CTTCTCGCCGCCTGGGAAGGCAGCAGCAGCGAGGGAGGGCTGGAGGAAGG
AGAGGACGCTGCTGGTACTCCTGGTGATGGTGGGGGAGGAGGAGGAGGAG
GAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGG
CGGCTGATGGTCCTTGGGGCGGCCGAACTCTTGGCCGACGCGTGGTTGGA
CCAGGAGGATAATGCCCTGCTGGCCGACGCCCTTTTTCAGGTAGGGAAGG
AGGGAGAGAGGGGAGGAGGGAAAGAGGGAGGGCGGGGAGGCGAATGGCAG
GTTACAAAAGCAACACATGACTTACGTGAGCCTTCTCGATCCCCCATTCC
CCTTTCCATCCTTTCTGACCTTTTCCTCCCCTTTTGTTGATCCGTTCCTT
CCTTCCAAACCCATCCAGTGGCTTCTACACAAGGACGACATCCTCGACTC
CTCCTCCTCCTCCTCCTCTTCCTCCTCCCTCCTTCGCACCCTCTTCTCTA
CCCCAATGCCCGACGCTTCCAGTGCTGCCGATGCTGCTGCAGGCCACCAT
GACCCCTCCCTTCCTCCCCCCCTCCCTTCCTCCCTCCAACCTCGGCTCCG
CGTCCCCTGCCTAAAAGATGTCGCCCAGCAACTCCGGCCTTGCCTTCAGG
TAGGAGACATCCAGGAGGAACGAAGTGCAGGAAGGGTAGGAAGGGAGAGA
AAGAAGGAAGCAAGGATAAATGTTATCTCCTCCACTATTTTTATGACGAC
GATTTTCCCCCTCATCAACGACAGGAGGACGCTGAGCCCCACCCACAAGA
CCACGCCGATCTGGCCCGCCTCTTCTTATTCTCTGCCGCCGATGGAAAGG
AAGGGCGGGAGGGAGGAGGAGGAGGGGAGGTGGGGGAAGAGGACCCGCCG
CTGTTTTCCTTGACGCCAAACGTGCTGATGCCCGAGGTGTTGGCGACATA
CAGAGCGTTAGGGCTGGAGCCCGAACAGCCGCTGAGGTTGATTGCGCCTG
AGCTCGTATGTCCGTTGCCACCCTTGCGGTAAGAGAGGAGGGAATGGAAG
GAGGGAGAATCGGACGGAAGGCAGGACGAAGAGCTGATCACAAGCAAAGG
TTGATGCTAGGCCGGCGCGTTGGACCCCCTCGCTGTGGCTCTTTTCACCT
TTCTCTCACTTCATTTTGGTCATCCACACACGCATAACAGCCCCGCAGTC
TTCCCCCCTTCTTTCGCCGCCTTGCCTCCGCCCAAACTGGAGCAATTCGA
TCTGGACGTGGCCTTTGCCTCTCCCTCTACCCGCCTGGCCCGCGTCCTAC
GCAAGTGCTGTCGGGACAAGCCGTCTGCACGGAGGAGTAGAGAAGAGAGC
GGGAGGGAGGTAGGAGTGGAGGTGGCGATGGATGACCTGGTGTACTTCGT
GAGGGAAGCGGCGGAGGTGAGTGAGTGGGGACTGATGGGAACGAGAAAGG
GAAAGAGGGAGGGGGGGAAGAGGGTCTATGGTATCCAGCACTTTGTCTGT
AGCGTCGTCTAGGACTCATTTTCGTTCTCCTGTCACGCATCCTCCTCGTT
CCCGTCTTCAGATCGCAGGCGTGGCAATTGACTCTCCGGCCTCGCTGCCA
GCAGGTGTGCAGGGCACGGCGAAGCAGGAAGAGGGCGAAGGGGAGGAGCA
GGCCAAGCGCCTCCTTGCCGCCGTCGTAGATCAGCTCGCCCGCTGGAAGG
GAGCGGACTGGCGGACTCCGTTAGGTGACGTGTCACGTGTACCTTGCAGT
TCACGCAGCGGCCGATAAACGCGACGTCTACCAGCGAGGCGGGTTTTGTC
ACTAATCGCGTGGATGTATCTTTCCCTTGTGCTGGCCTCCTTCTACAACG
ACGCAGTTCCACCGTCGTAGTTGCACTCGCTGTCTTCATTTTCCACATGT
CCGTCACCAACAAATAATAACAACGCTTGGATCCAGCT back to topCoding sequence (CDS) from alignment at chr1:1640926..1644563- >NO01G05840.2 ID=NO01G05840.2|Name=NO01G05840.2|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at chr1:1640926..1644563- (Nannochloropsis oceanica)
ATGGTGCTGCGGCAGGAGGAGACAGCGGGAGGCGGTCGACGGCACAGCAG
CAGCAGCCGCGGCATAACCAGCAGCAACAGCAGGAATAGCAACGCCAATG
ACAGAATAAAGGCATCTGCGACGCTCTACCACCAGGAGCATCCGCCGCCG
TCACGTCCTCAACCACCATTCGTGCTATTTGATTACACCAAGGGTGAAAA
TTGCCAAACCCTGAAACGGCTTTTTCGGCGTCTACGGAAAGCAGGCGTCC
ACGTCGAGATCAACAAGGATATAGACCTCCCATCCCTACTCAATCCAGCT
GTGCAGCAGCATCAATCGAGCCACCTCCGACCCTTTGCACCCCCACCTCC
GCCACCATCCCTCCTCGTTTTGGCCTGTCCCCAGGGGCCCTTTTCCTTCC
AAGAGCGACAAGCCATCGCCCGATATCTGCACCAGCAAAAAGGAAGCATC
CTTCTCCTTCTCTCCGAAGGTTGGGAAACCATCACTAGCAGCGGCAGCAA
CACCAGCAGTGTGAACGCCTGGCTGCAGCCTCTTGGCCTCCACGCTCATG
ATGACGCCGTCCTTCGCACCCGCCGTCACCCCCGCTATCCACACCCCAAA
GAGGTTTTCCTCGCCCTCCCTTTACACGATGAGGGAGAGACGCAAGAGGG
AGGGGAGGAAGAAGGGGGGAGGGGCTTCTCCCTCGTCTATCCGTACGGGT
GCTCGCTCTCCGTGCAGCCTCCCGCAAAAGCCCTCGTGTCCTCAGGCTCT
CTCGCTTACCCGCCCGACCGACCGCTTCTCGCCGCCTGGGAAGGCAGCAG
CAGCGAGGGAGGGCTGGAGGAAGGAGAGGACGCTGCTGGTACTCCTGGTG
ATGGTGGGGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGA
GGAGGAGGAGGAGGAGGAGGAGGGCGGCTGATGGTCCTTGGGGCGGCCGA
ACTCTTGGCCGACGCGTGGTTGGACCAGGAGGATAATGCCCTGCTGGCCG
ACGCCCTTTTTCAGTGGCTTCTACACAAGGACGACATCCTCGACTCCTCC
TCCTCCTCCTCCTCTTCCTCCTCCCTCCTTCGCACCCTCTTCTCTACCCC
AATGCCCGACGCTTCCAGTGCTGCCGATGCTGCTGCAGGCCACCATGACC
CCTCCCTTCCTCCCCCCCTCCCTTCCTCCCTCCAACCTCGGCTCCGCGTC
CCCTGCCTAAAAGATGTCGCCCAGCAACTCCGGCCTTGCCTTCAGGAGGA
CGCTGAGCCCCACCCACAAGACCACGCCGATCTGGCCCGCCTCTTCTTAT
TCTCTGCCGCCGATGGAAAGGAAGGGCGGGAGGGAGGAGGAGGAGGGGAG
GTGGGGGAAGAGGACCCGCCGCTGTTTTCCTTGACGCCAAACGTGCTGAT
GCCCGAGGTGTTGGCGACATACAGAGCGTTAGGGCTGGAGCCCGAACAGC
CGCTGAGGTTGATTGCGCCTGAGCTCGTATGTCCGTTGCCACCCTTGCGC
CCCGCAGTCTTCCCCCCTTCTTTCGCCGCCTTGCCTCCGCCCAAACTGGA
GCAATTCGATCTGGACGTGGCCTTTGCCTCTCCCTCTACCCGCCTGGCCC
GCGTCCTACGCAAGTGCTGTCGGGACAAGCCGTCTGCACGGAGGAGTAGA
GAAGAGAGCGGGAGGGAGGTAGGAGTGGAGGTGGCGATGGATGACCTGGT
GTACTTCGTGAGGGAAGCGGCGGAGATCGCAGGCGTGGCAATTGACTCTC
CGGCCTCGCTGCCAGCAGGTGTGCAGGGCACGGCGAAGCAGGAAGAGGGC
GAAGGGGAGGAGCAGGCCAAGCGCCTCCTTGCCGCCGTCGTAGATCAGCT
CGCCCGCTGGAAGGGAGCGGACTGGCGGACTCCGTTAGGTGACGTGTCAC
GTGTACCTTGCAGTTCACGCAGCGGCCGATAA back to top
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