NO01G05440, NO01G05440 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G05440 vs. NCBI_GenBank
Match: EWM22762.1 (16s ribosomal rna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 329.3 bits (843), Expect = 2.000e-86 Identity = 170/230 (73.91%), Postives = 189/230 (82.17%), Query Frame = 0 Query: 240 VDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRLHALDEQWELEVAQAETRILANWNGSTAAI 470 VDVLLAMQAPLRMERIIPH+VALGVGRLLITSAKKVEKSYWGSHLLREP ALR+LV+EGLSQAGDT VPDIII+RR+KRFL D LE LYPSSP+ + +S F TLRVLSHPFR LHDS GVDTRFR L P + E +PRLLLAIGPESGW+EPYEL+LFR+HGFQQ+TLGPRVLRTE AVPAL+ALAHD LHALDEQWE Q+ RI + + S AA+ Sbjct: 188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWE----QSIGRIASPQDDSGAAL 413
BLAST of NO01G05440 vs. NCBI_GenBank
Match: EJK65495.1 (hypothetical protein THAOC_13634 [Thalassiosira oceanica]) HSP 1 Score: 198.7 bits (504), Expect = 4.000e-47 Identity = 122/329 (37.08%), Postives = 177/329 (53.80%), Query Frame = 0 Query: 169 AVVRIAKDDARSRHVRKILRAQSGDCVRVGV-----------LNGGRNDEAPVEWEADGSLRIAL--------GPASSLLRPPPE------------DERPRVDVLLAMQAPLRME-----------------------RIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRLHAL 444 A V + KDD R+RH+ K L Q+GDCVR G L G DEA VEW +G ++ A G L+ PP+ D+ PRV +LLA+ PL+++ R++P + LGV L++T+A+KV K Y+GSHL R+P LR L++EGLSQ+GD +P + +++R+K FLED+L+ L+P S R+++HP R D G TR + DG R+LLA+GPE GW+EPYELD+F++ GF+++TLG RVLRT+ AV +L+ALA++ +L Sbjct: 62 ATVTLPKDDYRTRHIAKTLNLQNGDCVRAGCVRDRDPSEFDSLGGLMTDEAFVEWLPEGKIKKASPTRNREPPGSLKVLIPNPPKTSLWEDRYGAETDDTPRVSLLLALPRPLQLQRWGLFIQCENSLEFWSLLTNFRIRLLPMVAQLGVENLILTNARKVPKDYFGSHLFRKPSVLRGLLVEGLSQSGDVRLPRVTVSKRLKIFLEDELDELFPRSQYE----------RIIAHPQR--KDETGRMTRMSDI----KVNATDGSPR------RILLAVGPEGGWEEPYELDMFQKLGFKRITLGTRVLRTDVAVVSLLALANEACSSL 368
BLAST of NO01G05440 vs. NCBI_GenBank
Match: XP_005784894.1 (hypothetical protein EMIHUDRAFT_230791 [Emiliania huxleyi CCMP1516] >EOD32465.1 hypothetical protein EMIHUDRAFT_230791 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 196.4 bits (498), Expect = 2.000e-46 Identity = 117/280 (41.79%), Postives = 164/280 (58.57%), Query Frame = 0 Query: 166 DATAVVRIAKDDARSRHVRKILRAQSGDCVRVGVLNGGRNDEAPVEWEADGS-----LRIALGPASSLLRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRL 441 D TA + DD R++HVR +LRA+ G +R GVL+ G +DEA V W G+ LR+ALG S LRP ERPR+D+LLAM PL+ R++P + +LGVG + +T+A K EKS++ SHLLRE A + + L AGDT VP ++++RR++ L D L R+++HP R D+ V L ++G PR+LLA+GPE GWDEP EL+L R+HGF++VTLG R LRT+ AV +L+++AH L Sbjct: 43 DGTAT--LPADDPRTQHVRVVLRARDGASIRAGVLDRGSSDEATVCWLPGGADDPPGLRLALGEPSR-LRPA---ERPRIDLLLAMPRPLQFGRLLPMVASLGVGTVYVTAAAKTEKSFFSSHLLREDQAAQQQLRAAL--AGDTAVPRVVVDRRLRSLLRDRLPQY---------------GRRLVAHPRREGRDARTVGEALSGLASSQAAIDAGEGQDGAGSGPRVLLAVGPEGGWDEPAELELLREHGFEEVTLGSRTLRTDVAVVSLLSVAHASL 299
BLAST of NO01G05440 vs. NCBI_GenBank
Match: XP_005855168.1 (16s ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526] >EKU21192.1 16s ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 193.0 bits (489), Expect = 2.200e-45 Identity = 130/304 (42.76%), Postives = 153/304 (50.33%), Query Frame = 0 Query: 166 DATAVVRIAKDDARSRHVRKILRAQSGDCVRVGVLNGGRNDEAPVEWEADGSLRIALGPASSLLRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRLHALDEQWELEVAQAETRILANWNGSTAAI 470 + + +VR+ +DDAR++HVRK+LRA++GD VRVGVLNGG RVDVLLAMQAPLRMERIIPH+VALGVGRLLITSAKK ALR+LV+EGLSQAGDT VPDIII+RR+K EPYEL+LFR+HGFQQ+TLGPRVLRTE AVPAL+ALAHD LHALDEQWE Q+ RI + + S AA+ Sbjct: 166 EESVIVRLGQDDARAQHVRKVLRAKTGDEVRVGVLNGG-----------------------------------RVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKK--------------QALRELVVEGLSQAGDTIVPDIIIDRRLK-----------------------------------------------------------------------------------EPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWE----QSIGRIASPQDDSGAAL 333
BLAST of NO01G05440 vs. NCBI_GenBank
Match: CBN77701.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 191.8 bits (486), Expect = 4.900e-45 Identity = 120/346 (34.68%), Postives = 183/346 (52.89%), Query Frame = 0 Query: 177 DARSRHVRKILRAQSGDCVRVGVLNGGRNDEAPVEWE-----ADGS--------------------LRIALGPAS-SLLRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRV-----------------LHDSPGVDTRFRHLIPPPITGGRDGRKEGGR-------------QRPR--------LLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRLHALDEQWELEVAQAETRI 459 D+R+ HVR +L+ ++G+ VRVGV+N GR D+A + WE +G+ L + LGP+ LL+P P+++RP+V ++LA+ PL++ERI+P + +LGV +++ AKKV K Y+GSH R+P ++R+ +IEGLSQ+GDT +P++++ RR+K FLEDDL+ +P +R L+HP R+ GV + +G DG + G + P+ +L+A+GPE GW EP EL L + GFQ VTLG RVLR++ AV AL+ALAH + + Q ET + Sbjct: 111 DSRTAHVRGVLKVENGESVRVGVVNAGRMDDASIAWEEPTDPPEGAPPPDIPGRQKGRKSSPKWMDLVLDLGPSDRQLLKPVPDEQRPKVALMLAVPRPLQLERILPVVASLGVTTIVLCQAKKVPKFYFGSHFFRDPPSVREKLIEGLSQSGDTVMPEVMVARRLKIFLEDDLDRCFPRD----------RWVRALAHPTRLPAQVSRCAGGEATAAATAAGGEGVGVEAGVVAATAQSGRVDGVESDGAATAPVPALRFSQIEPPKGCDPADVGVLVAVGPEGGWVEPDELQLLQSFGFQAVTLGSRVLRSDVAVNALLALAHAWVDERAAGTQYSAVQQETSV 446
BLAST of NO01G05440 vs. NCBI_GenBank
Match: GAX14281.1 (hypothetical protein FisN_1Hh477 [Fistulifera solaris]) HSP 1 Score: 181.0 bits (458), Expect = 8.700e-42 Identity = 105/283 (37.10%), Postives = 161/283 (56.89%), Query Frame = 0 Query: 173 IAKDDARSRHVRKILRAQSGDCVRVGVL-----NGGRNDEAPVEWEADGSLRIAL-----GPASSL------LRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLF-RQHGFQQVTLGPRVLRTEAAVPALVALAHD 439 + KDD R+ H KIL ++GD VR G++ NG D A V+W +G ++ A P SL L + V ++LA+ PL++ R++P I +GV L++T A+KV K Y+GSHL R+P+ L + +IEGL Q+GDT +P + + + + +F++D L+ L+P H RV++HP RV+ D R R +T D + R+++A+GPE GW+EP E++ F QHGFQQ+T+G RVLR++ AV +L+ LAHD Sbjct: 41 LGKDDYRTIHAAKILNLRNGDSVRAGLVSSEDHNGFLTDHATVQWLPEGKVKKAEVLNNGDPPGSLHIRLQSLESSTQRFSHSVSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPQVTVVKNLSQFMDDTLDELFP----------LHSHARVIAHPQRVVKDRVIESVRMR-----SVTFPTDSPR-------RMVIAVGPEGGWEEPNEIERFVNQHGFQQITMGTRVLRSDCAVVSLLGLAHD 301
BLAST of NO01G05440 vs. NCBI_GenBank
Match: XP_002178035.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50849.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 176.4 bits (446), Expect = 2.100e-40 Identity = 104/284 (36.62%), Postives = 165/284 (58.10%), Query Frame = 0 Query: 171 VRIAKDDARSRHVRKILRAQSGDCVRVGVLN-----GGRNDEAPVEWEADGSLRIA--LG---PASSL------LRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHD 439 + + +DD R+ H KIL ++G+ +R G+++ G D+A V+W +G ++ A LG P SL L+ P E P V ++LA+ PL++ R++P I +GV L++ A+KV K Y+GSHLLR P+ LR+ +IEGL QAGD +P + I R ++ FL ++++ ++P + + R ++HP R D G + + + P + RL++A+GPE GW+EP ELD FR GFQQ+T+G RVLR++ AV +L++LAHD Sbjct: 67 ITLPRDDFRTIHASKILGLRNGNTIRAGLVSCEVHQGLLTDDATVQWIPEGKVKKAEPLGNGNPPGSLHIHLNGLQAPAEQLVPSVSLILALPRPLQLGRMLPMISQMGVNHLVLAQAQKVPKDYFGSHLLRNPEELREKLIEGLCQAGDVRLPQLHIVRNLRDFLTNEVDEIFPKNQYA----------RAIAHPQRT-SDPMGSLKKMKQVEFPV-------------KSSRLVVAVGPEGGWEEPDELDRFRDCGFQQITMGARVLRSDCAVVSLLSLAHD 326
BLAST of NO01G05440 vs. NCBI_GenBank
Match: GAX20043.1 (hypothetical protein FisN_1Lh477 [Fistulifera solaris]) HSP 1 Score: 172.9 bits (437), Expect = 2.400e-39 Identity = 103/284 (36.27%), Postives = 157/284 (55.28%), Query Frame = 0 Query: 173 IAKDDARSRHVRKILRAQSGDCVRVGVL-----NGGRNDEAPVEWEADGSLRIAL-----GPASSL------LRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPR-LLLAIGPESGWDEPYELDLF-RQHGFQQVTLGPRVLRTEAAVPALVALAHD 439 + KDD R+ H KIL ++GD VR G++ NG D A V+W +G ++ A P SL L + V ++LA+ PL++ R++P I +GV L++T A+KV K Y+GSHL R+P+ L + +IEGL Q+GDT +P + I + + +FL+ ++ L+P H RV++HP RV+ D R R + P PR +++A+GPE GW+EP E+D F +H F Q+T+G RVLR++ AV +L+ LAHD Sbjct: 63 LGKDDYRTIHAAKILNLRNGDSVRAGLVSSNDNNGFLTDHATVQWLPEGKIKKAEVLNNGEPPGSLHITLQSLESSTQRFSHSVSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPKVTIVKSLSQFLDGKVDELFP----------LHSYARVIAHPQRVVEDRVIESVRMRSVSFP-------------TDSPRKIVIAVGPEGGWEEPNEIDRFVNEHDFHQITMGTRVLRSDCAVVSLLGLAHD 323
BLAST of NO01G05440 vs. NCBI_GenBank
Match: OEU13723.1 (alpha/beta knot [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 166.0 bits (419), Expect = 2.900e-37 Identity = 108/311 (34.73%), Postives = 168/311 (54.02%), Query Frame = 0 Query: 166 DATAVV--RIAKDDARSRHVRKILRAQSGDCVRVGVLNGGR-------NDEAPVEW---------------EADGSLRIALGPASSL---LRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRF-LEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRP-RLLLAIGPESGWDEPYELDLFRQH-GFQQVTLGPRVLRTEAAVPALVALAHDRLHALDEQ 447 D+T++V ++ KDD R+ H K L ++GD +R G++ G DEA VEW G L I L S+ + P + V ++LA+ PL++ RI+P I +GV L++TSAKKV K Y+GSHL ++P+ L + +IEGL QAGD +P + + R + F L ++ + L+P + RVLSHP R + + P+ R + E + P R+++A+GPE GW+EPYELD+ + GFQQ+TLG R LR++ AV L++LAH+ ++ D++ Sbjct: 54 DSTSIVEIKLPKDDYRTIHAAKTLGLKNGDLIRAGLVGGSSGDDAGQWTDEATVEWIPIPPVKKAEVLKNGNPPGFLSIRLNNLKSIDNDSQSSPATDPINVSLILALPRPLQLGRILPMISQIGVDHLVLTSAKKVPKEYFGSHLFKKPELLTEKLIEGLCQAGDVRLPQLHLVRNFRNFLLSEEFDNLFPKETYA----------RVLSHPKR------------QSDLEEPL---RMSQVEFPKTSPSRIVVAVGPEGGWEEPYELDMLKNDCGFQQITLGSRTLRSDVAVCGLLSLAHEACYSNDKK 339
BLAST of NO01G05440 vs. NCBI_GenBank
Match: WP_052880786.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Kiritimatiella glycovorans] >AKJ63343.1 Ribosomal RNA small subunit methyltransferase E [Kiritimatiella glycovorans]) HSP 1 Score: 164.9 bits (416), Expect = 6.400e-37 Identity = 102/264 (38.64%), Postives = 150/264 (56.82%), Query Frame = 0 Query: 177 DARSRHVRKILRAQSGDCVRVGVLNGGRNDEAPVEWEADGSLRIALGPASSLLRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRL 441 DAR+ H+RK+L A++G +R+G+++G R E G + L + + RPP RP VD+LLA+ P ++R++ + A+GVGR+++T+A+KVE+ Y+ SH+L + +R ++EGL QAGDT VPD+ I R +K FLED+L+AL P S +R+L+HP PP R G R R+L A+GPE GW + YELD+ QH F VT+GPR LR++ A AL A R+ Sbjct: 21 DARAVHIRKVLGARAGQRLRIGLIDGPRGIGTVERAEESG---VVLSCSVEIARPP----RPPVDLLLALPRPKILKRLLAQLAAVGVGRIMLTNAEKVERYYFDSHVL-DAAFIRARLVEGLQQAGDTRVPDVFIRRELKPFLEDELDALEPES------------VRLLAHP---------------RAGRPPEDALRAADPRGER---RVLAALGPEGGWTD-YELDMIGQHSFIPVTMGPRTLRSDTAAIALHARIRGRM 245 The following BLAST results are available for this feature:
BLAST of NO01G05440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G05440 ID=NO01G05440|Name=NO01G05440|organism=Nannochloropsis oceanica|type=gene|length=4220bpback to top protein sequence of NO01G05440.2 >NO01G05440.2-protein ID=NO01G05440.2-protein|Name=NO01G05440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=406bpback to top protein sequence of NO01G05440.1 >NO01G05440.1-protein ID=NO01G05440.1-protein|Name=NO01G05440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bpback to top Synonyms
Publications
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