NO01G05440, NO01G05440 (gene) Nannochloropsis oceanica

Overview
NameNO01G05440
Unique NameNO01G05440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4220
Alignment locationchr1:1491307..1495526 -

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Properties
Property NameValue
Description16s ribosomal rna methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1491307..1495526 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR006700rRNA_ssu_MeTrfase-E
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO01G05440 vs. NCBI_GenBank
Match: EWM22762.1 (16s ribosomal rna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 329.3 bits (843), Expect = 2.000e-86
Identity = 170/230 (73.91%), Postives = 189/230 (82.17%), Query Frame = 0
Query:  240 VDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRLHALDEQWELEVAQAETRILANWNGSTAAI 470
            VDVLLAMQAPLRMERIIPH+VALGVGRLLITSAKKVEKSYWGSHLLREP ALR+LV+EGLSQAGDT VPDIII+RR+KRFL D LE LYPSSP+ + +S F  TLRVLSHPFR LHDS GVDTRFR L  P        + E    +PRLLLAIGPESGW+EPYEL+LFR+HGFQQ+TLGPRVLRTE AVPAL+ALAHD LHALDEQWE    Q+  RI +  + S AA+
Sbjct:  188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWE----QSIGRIASPQDDSGAAL 413          
BLAST of NO01G05440 vs. NCBI_GenBank
Match: EJK65495.1 (hypothetical protein THAOC_13634 [Thalassiosira oceanica])

HSP 1 Score: 198.7 bits (504), Expect = 4.000e-47
Identity = 122/329 (37.08%), Postives = 177/329 (53.80%), Query Frame = 0
Query:  169 AVVRIAKDDARSRHVRKILRAQSGDCVRVGV-----------LNGGRNDEAPVEWEADGSLRIAL--------GPASSLLRPPPE------------DERPRVDVLLAMQAPLRME-----------------------RIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRLHAL 444
            A V + KDD R+RH+ K L  Q+GDCVR G            L G   DEA VEW  +G ++ A         G    L+  PP+            D+ PRV +LLA+  PL+++                       R++P +  LGV  L++T+A+KV K Y+GSHL R+P  LR L++EGLSQ+GD  +P + +++R+K FLED+L+ L+P S             R+++HP R   D  G  TR   +         DG         R+LLA+GPE GW+EPYELD+F++ GF+++TLG RVLRT+ AV +L+ALA++   +L
Sbjct:   62 ATVTLPKDDYRTRHIAKTLNLQNGDCVRAGCVRDRDPSEFDSLGGLMTDEAFVEWLPEGKIKKASPTRNREPPGSLKVLIPNPPKTSLWEDRYGAETDDTPRVSLLLALPRPLQLQRWGLFIQCENSLEFWSLLTNFRIRLLPMVAQLGVENLILTNARKVPKDYFGSHLFRKPSVLRGLLVEGLSQSGDVRLPRVTVSKRLKIFLEDELDELFPRSQYE----------RIIAHPQR--KDETGRMTRMSDI----KVNATDGSPR------RILLAVGPEGGWEEPYELDMFQKLGFKRITLGTRVLRTDVAVVSLLALANEACSSL 368          
BLAST of NO01G05440 vs. NCBI_GenBank
Match: XP_005784894.1 (hypothetical protein EMIHUDRAFT_230791 [Emiliania huxleyi CCMP1516] >EOD32465.1 hypothetical protein EMIHUDRAFT_230791 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 196.4 bits (498), Expect = 2.000e-46
Identity = 117/280 (41.79%), Postives = 164/280 (58.57%), Query Frame = 0
Query:  166 DATAVVRIAKDDARSRHVRKILRAQSGDCVRVGVLNGGRNDEAPVEWEADGS-----LRIALGPASSLLRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRL 441
            D TA   +  DD R++HVR +LRA+ G  +R GVL+ G +DEA V W   G+     LR+ALG  S  LRP    ERPR+D+LLAM  PL+  R++P + +LGVG + +T+A K EKS++ SHLLRE  A +  +   L  AGDT VP ++++RR++  L D L                    R+++HP R   D+  V      L            ++G    PR+LLA+GPE GWDEP EL+L R+HGF++VTLG R LRT+ AV +L+++AH  L
Sbjct:   43 DGTAT--LPADDPRTQHVRVVLRARDGASIRAGVLDRGSSDEATVCWLPGGADDPPGLRLALGEPSR-LRPA---ERPRIDLLLAMPRPLQFGRLLPMVASLGVGTVYVTAAAKTEKSFFSSHLLREDQAAQQQLRAAL--AGDTAVPRVVVDRRLRSLLRDRLPQY---------------GRRLVAHPRREGRDARTVGEALSGLASSQAAIDAGEGQDGAGSGPRVLLAVGPEGGWDEPAELELLREHGFEEVTLGSRTLRTDVAVVSLLSVAHASL 299          
BLAST of NO01G05440 vs. NCBI_GenBank
Match: XP_005855168.1 (16s ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526] >EKU21192.1 16s ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 193.0 bits (489), Expect = 2.200e-45
Identity = 130/304 (42.76%), Postives = 153/304 (50.33%), Query Frame = 0
Query:  166 DATAVVRIAKDDARSRHVRKILRAQSGDCVRVGVLNGGRNDEAPVEWEADGSLRIALGPASSLLRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRLHALDEQWELEVAQAETRILANWNGSTAAI 470
            + + +VR+ +DDAR++HVRK+LRA++GD VRVGVLNGG                                   RVDVLLAMQAPLRMERIIPH+VALGVGRLLITSAKK               ALR+LV+EGLSQAGDT VPDIII+RR+K                                                                                   EPYEL+LFR+HGFQQ+TLGPRVLRTE AVPAL+ALAHD LHALDEQWE    Q+  RI +  + S AA+
Sbjct:  166 EESVIVRLGQDDARAQHVRKVLRAKTGDEVRVGVLNGG-----------------------------------RVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKK--------------QALRELVVEGLSQAGDTIVPDIIIDRRLK-----------------------------------------------------------------------------------EPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWE----QSIGRIASPQDDSGAAL 333          
BLAST of NO01G05440 vs. NCBI_GenBank
Match: CBN77701.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 191.8 bits (486), Expect = 4.900e-45
Identity = 120/346 (34.68%), Postives = 183/346 (52.89%), Query Frame = 0
Query:  177 DARSRHVRKILRAQSGDCVRVGVLNGGRNDEAPVEWE-----ADGS--------------------LRIALGPAS-SLLRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRV-----------------LHDSPGVDTRFRHLIPPPITGGRDGRKEGGR-------------QRPR--------LLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRLHALDEQWELEVAQAETRI 459
            D+R+ HVR +L+ ++G+ VRVGV+N GR D+A + WE      +G+                    L + LGP+   LL+P P+++RP+V ++LA+  PL++ERI+P + +LGV  +++  AKKV K Y+GSH  R+P ++R+ +IEGLSQ+GDT +P++++ RR+K FLEDDL+  +P              +R L+HP R+                      GV      +     +G  DG +  G              + P+        +L+A+GPE GW EP EL L +  GFQ VTLG RVLR++ AV AL+ALAH  +       +    Q ET +
Sbjct:  111 DSRTAHVRGVLKVENGESVRVGVVNAGRMDDASIAWEEPTDPPEGAPPPDIPGRQKGRKSSPKWMDLVLDLGPSDRQLLKPVPDEQRPKVALMLAVPRPLQLERILPVVASLGVTTIVLCQAKKVPKFYFGSHFFRDPPSVREKLIEGLSQSGDTVMPEVMVARRLKIFLEDDLDRCFPRD----------RWVRALAHPTRLPAQVSRCAGGEATAAATAAGGEGVGVEAGVVAATAQSGRVDGVESDGAATAPVPALRFSQIEPPKGCDPADVGVLVAVGPEGGWVEPDELQLLQSFGFQAVTLGSRVLRSDVAVNALLALAHAWVDERAAGTQYSAVQQETSV 446          
BLAST of NO01G05440 vs. NCBI_GenBank
Match: GAX14281.1 (hypothetical protein FisN_1Hh477 [Fistulifera solaris])

HSP 1 Score: 181.0 bits (458), Expect = 8.700e-42
Identity = 105/283 (37.10%), Postives = 161/283 (56.89%), Query Frame = 0
Query:  173 IAKDDARSRHVRKILRAQSGDCVRVGVL-----NGGRNDEAPVEWEADGSLRIAL-----GPASSL------LRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLF-RQHGFQQVTLGPRVLRTEAAVPALVALAHD 439
            + KDD R+ H  KIL  ++GD VR G++     NG   D A V+W  +G ++ A       P  SL      L    +     V ++LA+  PL++ R++P I  +GV  L++T A+KV K Y+GSHL R+P+ L + +IEGL Q+GDT +P + + + + +F++D L+ L+P           H   RV++HP RV+ D      R R      +T   D  +       R+++A+GPE GW+EP E++ F  QHGFQQ+T+G RVLR++ AV +L+ LAHD
Sbjct:   41 LGKDDYRTIHAAKILNLRNGDSVRAGLVSSEDHNGFLTDHATVQWLPEGKVKKAEVLNNGDPPGSLHIRLQSLESSTQRFSHSVSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPQVTVVKNLSQFMDDTLDELFP----------LHSHARVIAHPQRVVKDRVIESVRMR-----SVTFPTDSPR-------RMVIAVGPEGGWEEPNEIERFVNQHGFQQITMGTRVLRSDCAVVSLLGLAHD 301          
BLAST of NO01G05440 vs. NCBI_GenBank
Match: XP_002178035.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50849.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 176.4 bits (446), Expect = 2.100e-40
Identity = 104/284 (36.62%), Postives = 165/284 (58.10%), Query Frame = 0
Query:  171 VRIAKDDARSRHVRKILRAQSGDCVRVGVLN-----GGRNDEAPVEWEADGSLRIA--LG---PASSL------LRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHD 439
            + + +DD R+ H  KIL  ++G+ +R G+++     G   D+A V+W  +G ++ A  LG   P  SL      L+ P E   P V ++LA+  PL++ R++P I  +GV  L++  A+KV K Y+GSHLLR P+ LR+ +IEGL QAGD  +P + I R ++ FL ++++ ++P +  +          R ++HP R   D  G   + + +  P              +  RL++A+GPE GW+EP ELD FR  GFQQ+T+G RVLR++ AV +L++LAHD
Sbjct:   67 ITLPRDDFRTIHASKILGLRNGNTIRAGLVSCEVHQGLLTDDATVQWIPEGKVKKAEPLGNGNPPGSLHIHLNGLQAPAEQLVPSVSLILALPRPLQLGRMLPMISQMGVNHLVLAQAQKVPKDYFGSHLLRNPEELREKLIEGLCQAGDVRLPQLHIVRNLRDFLTNEVDEIFPKNQYA----------RAIAHPQRT-SDPMGSLKKMKQVEFPV-------------KSSRLVVAVGPEGGWEEPDELDRFRDCGFQQITMGARVLRSDCAVVSLLSLAHD 326          
BLAST of NO01G05440 vs. NCBI_GenBank
Match: GAX20043.1 (hypothetical protein FisN_1Lh477 [Fistulifera solaris])

HSP 1 Score: 172.9 bits (437), Expect = 2.400e-39
Identity = 103/284 (36.27%), Postives = 157/284 (55.28%), Query Frame = 0
Query:  173 IAKDDARSRHVRKILRAQSGDCVRVGVL-----NGGRNDEAPVEWEADGSLRIAL-----GPASSL------LRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPR-LLLAIGPESGWDEPYELDLF-RQHGFQQVTLGPRVLRTEAAVPALVALAHD 439
            + KDD R+ H  KIL  ++GD VR G++     NG   D A V+W  +G ++ A       P  SL      L    +     V ++LA+  PL++ R++P I  +GV  L++T A+KV K Y+GSHL R+P+ L + +IEGL Q+GDT +P + I + + +FL+  ++ L+P           H   RV++HP RV+ D      R R +  P                PR +++A+GPE GW+EP E+D F  +H F Q+T+G RVLR++ AV +L+ LAHD
Sbjct:   63 LGKDDYRTIHAAKILNLRNGDSVRAGLVSSNDNNGFLTDHATVQWLPEGKIKKAEVLNNGEPPGSLHITLQSLESSTQRFSHSVSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPKVTIVKSLSQFLDGKVDELFP----------LHSYARVIAHPQRVVEDRVIESVRMRSVSFP-------------TDSPRKIVIAVGPEGGWEEPNEIDRFVNEHDFHQITMGTRVLRSDCAVVSLLGLAHD 323          
BLAST of NO01G05440 vs. NCBI_GenBank
Match: OEU13723.1 (alpha/beta knot [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 166.0 bits (419), Expect = 2.900e-37
Identity = 108/311 (34.73%), Postives = 168/311 (54.02%), Query Frame = 0
Query:  166 DATAVV--RIAKDDARSRHVRKILRAQSGDCVRVGVLNGGR-------NDEAPVEW---------------EADGSLRIALGPASSL---LRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRF-LEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRP-RLLLAIGPESGWDEPYELDLFRQH-GFQQVTLGPRVLRTEAAVPALVALAHDRLHALDEQ 447
            D+T++V  ++ KDD R+ H  K L  ++GD +R G++ G          DEA VEW                  G L I L    S+    +  P  +   V ++LA+  PL++ RI+P I  +GV  L++TSAKKV K Y+GSHL ++P+ L + +IEGL QAGD  +P + + R  + F L ++ + L+P    +          RVLSHP R            +  +  P+   R  + E  +  P R+++A+GPE GW+EPYELD+ +   GFQQ+TLG R LR++ AV  L++LAH+  ++ D++
Sbjct:   54 DSTSIVEIKLPKDDYRTIHAAKTLGLKNGDLIRAGLVGGSSGDDAGQWTDEATVEWIPIPPVKKAEVLKNGNPPGFLSIRLNNLKSIDNDSQSSPATDPINVSLILALPRPLQLGRILPMISQIGVDHLVLTSAKKVPKEYFGSHLFKKPELLTEKLIEGLCQAGDVRLPQLHLVRNFRNFLLSEEFDNLFPKETYA----------RVLSHPKR------------QSDLEEPL---RMSQVEFPKTSPSRIVVAVGPEGGWEEPYELDMLKNDCGFQQITLGSRTLRSDVAVCGLLSLAHEACYSNDKK 339          
BLAST of NO01G05440 vs. NCBI_GenBank
Match: WP_052880786.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Kiritimatiella glycovorans] >AKJ63343.1 Ribosomal RNA small subunit methyltransferase E [Kiritimatiella glycovorans])

HSP 1 Score: 164.9 bits (416), Expect = 6.400e-37
Identity = 102/264 (38.64%), Postives = 150/264 (56.82%), Query Frame = 0
Query:  177 DARSRHVRKILRAQSGDCVRVGVLNGGRNDEAPVEWEADGSLRIALGPASSLLRPPPEDERPRVDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWDEPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRL 441
            DAR+ H+RK+L A++G  +R+G+++G R        E  G   + L  +  + RPP    RP VD+LLA+  P  ++R++  + A+GVGR+++T+A+KVE+ Y+ SH+L +   +R  ++EGL QAGDT VPD+ I R +K FLED+L+AL P S            +R+L+HP                   PP    R     G R   R+L A+GPE GW + YELD+  QH F  VT+GPR LR++ A  AL A    R+
Sbjct:   21 DARAVHIRKVLGARAGQRLRIGLIDGPRGIGTVERAEESG---VVLSCSVEIARPP----RPPVDLLLALPRPKILKRLLAQLAAVGVGRIMLTNAEKVERYYFDSHVL-DAAFIRARLVEGLQQAGDTRVPDVFIRRELKPFLEDELDALEPES------------VRLLAHP---------------RAGRPPEDALRAADPRGER---RVLAALGPEGGWTD-YELDMIGQHSFIPVTMGPRTLRSDTAAIALHARIRGRM 245          
The following BLAST results are available for this feature:
BLAST of NO01G05440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22762.12.000e-8673.9116s ribosomal rna methyltransferase [Nannochlorops... [more]
EJK65495.14.000e-4737.08hypothetical protein THAOC_13634 [Thalassiosira oc... [more]
XP_005784894.12.000e-4641.79hypothetical protein EMIHUDRAFT_230791 [Emiliania ... [more]
XP_005855168.12.200e-4542.7616s ribosomal rna methyltransferase [Nannochlorops... [more]
CBN77701.14.900e-4534.68conserved unknown protein [Ectocarpus siliculosus][more]
GAX14281.18.700e-4237.10hypothetical protein FisN_1Hh477 [Fistulifera sola... [more]
XP_002178035.12.100e-4036.62predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX20043.12.400e-3936.27hypothetical protein FisN_1Lh477 [Fistulifera sola... [more]
OEU13723.12.900e-3734.73alpha/beta knot [Fragilariopsis cylindrus CCMP1102... [more]
WP_052880786.16.400e-3738.6416S rRNA (uracil(1498)-N(3))-methyltransferase [Ki... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL000nonsL000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006302NSK006302Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05440.2NO01G05440.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05440.1NO01G05440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577792gene_573Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100297g5gene7685Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05440.2NO01G05440.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05440.1NO01G05440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05440 ID=NO01G05440|Name=NO01G05440|organism=Nannochloropsis oceanica|type=gene|length=4220bp
TTCATTATAGAGGTTGTAGACTGTCAAGTGGAGATATGAGAGACGGGTGA
GATTGTCGGACTGCGAAAAGGTGGCTCAGTTGCGCAGCGATCCGCTGAGC
TGGGACACGCACAACTCTTTAAGACCTCGTTTGTGTATGTGTGTGATACA
TACGCACATACACATACACACACGCACACACCCACATACACACGCACAAT
ACATCTCTGTACGGTGCTTGAAGACGCAGATCGCATAATATGCCACATTT
CTTTCACTGCAACCAATCTGCAGTGCCCAAGGGTACACAGTTACCCCAAA
AGCCACACAATGCTCTTGTTTACCCATTATCATGACGTGATACCGTTGGG
ACGCAAATAAACGCTTCGTGAAGAGCTATACTACCCGCACGGGGGTGTTT
GCGCGGTGAGTAAAATGTCCGAGCGGTAGCACGGGTGAACAAATGATGCC
CTATCTTCTGTGTCAAGAAACGGGTCATATTCAGAAGACCCTGTGTAATG
ATTTTCGGCGCACGTCCTTGGTCTCACGCGCACGCAGACCCTCTCCTCTG
GGAGGGAACTAACATCCACCCCATTTGCGTGCCAGTGCTCTGTCGCTATT
CCCCGGGTGCCTGAAGTAGTCAAGCTAATGGCAAGCCACCACATAGTACG
AGGTTACAAAAGATTAGCATAGTCCTGTGTTGCACGCGTTGGGTAGAGTT
GATCAGCCGTATCAGACGCCATTTACAAAAGCGCCTCGTGTGTATCGTTT
GTATCACTGACTTCCATAGCCATCACGCCCATCACACCCAGCACATAAGT
CCACAAACCACAATATTATGAGAGGTTGTAGTCATGTCGACAATGGACAC
AAGACAGAGTGCGAGACACACTCATGCATCGCGTGATCGAGGGAAAAGAG
GAGCAAATGAACGAGGGCAGGAGACGAGGAGTGGAGCCGCATGATCCCAA
ATGATGCTTTTCTTGATTCCTGATAACTTTCAGGTAAACTTATTTTTTTC
ATCACATCATTTTCCGAGgtatggcgcggttcactcgatagagggcatta
catattacactctcgtacacacgctcacacatcatgcttccttctcattc
gacacagCCAGTCAGTCCTGCGGATGCATTCCCGTCTGTGAACTTCTTAC
CGTTGACCGCTGATGGGGCAGGAGCATCGAACGTCACGTTCATCAGGAGC
AGGGCGTGAAGGCTACAGCAAGACCTTTCGACCCCTCAGTGGACGTAATT
TTTGCCTGCTCTTGCATTGCGCCCCATTCGTGATGATGGCAGCTGCGGCG
GCTGGCGGCCGGCGGACTCCAGGCTTGCAAATGTTGAGTACTCTGAGGAC
GAGAGGGTGGGATGTCCTCTCGGGAATGGTCAGCAGCACCAGCACCAACA
ACTGCAGGAGGAGGGGCTTGCCTTCTTCGTCCTTTGGCTTTGTCCTACCA
TCTGCAACGCCATCACAGACGGCGGGAGTAGCAATACGAAGACAATGGGA
GGCTCCCATCAAAACCACCACTACCACCACCACCAGAAGGACAATTTCTG
GCTCCCCTCCTCTGCCATTGAACCGCCTGCTTTTCGAGCCCGAGGAGGTC
ATTGCGATGCCGCAGCAACAGCAGCAGCAGCAGAAGAAGAAGAAGAAAGC
ACTGGAAGACGCCACGGCAGTCGTTCGGATAGCCAAAGACGACGCGCGAT
CGCGGCATGTGCGAAAGgtgaaaaagggtgaagaggtgaagagagagggg
cgctgaatatctgctgaattttcgagtcagcatttgtctgtgtactaggc
gcatacatacttatgtgtgcctacctccccgtctctttccctccccctcc
ctccctccctacctctctccccgactattctatcaagATCCTTCGTGCTC
AGTCTGGAGATTGCGTGCGTGTTGGTGTTCTGAACGGGGGCCGgtgagtg
cttgaatgggcttttaaaatggcaagggttaaggaataataaaggaagaa
atatgtggtgaggatggtcgggaggaggagggtaccttggtgtgttcgta
ctcatgctcctcatgacttcatcgaccacgcttacagGAATGACGAGGCG
CCTGTCGAGTGGGAGGCAGATGGCAGTCTTCGCATTGCTCTGGGTCCCGC
CTCCAGCCTCTTGCGACCCCCTCCGGAAGATGAGCGTCCTCGgtacgtca
ttccccactgttatggaagctctctttctgccgttcccttactccttccc
tccctcccttcccttctcttctcctctcgctcatcagGGTTGACGTTCTC
CTAGCCATGCAAGCTCCTTTGCGGATGGAGCGCATTATCCCTCATATCGT
CGCTTTGGGCGTAGGCCGCCTTCTGATTACCTCGGCCAAGAAGgtaggga
aggagggaaggaggggggatctcgctcaaatcgtggtagatcattccacg
aagattgaatgaagagagaaaggcggaggcatgtacatgcacctacttga
ccctcatccctcgtcccttacttatacgcagGTGGAGAAGAGCTACTGGG
GCTCGCATCTGCTGCGAGAGCCGgtaagtccgcctgaaccaccggaggga
cgcagggagcaagggagggattgagagaagggaaaaccaagagatggttg
attcatttggaggggcaagattgtattattagactcctttgcctcttttt
cgtagtgtcttattgtcttacgtattctttcctttctatcaccccatcca
ttatattagGACGCCCTCCGAGACCTAGTCATAGAGGGCCTCAGCCAGgt
aggcacggagatggacggccttgctcgctgccttcctgtactctatatct
ctctttttttcctctatctctccctcttcgtccctctttatcttcctttc
tttcttttccccctctctctctctctttctttctctttccccctctccct
ctttctttccaactcacacattattttttctctaatgattcttcggctta
caatatattccccttcgtccatgcgttccccctctcgtccagGCTGGCGA
TACCTTTGTTCCCGACATCATCATTAATCGCCGCGTAAAGgtacgtacgc
tctgaaaatgcttaacagctctttttcctcctcagtgtcgcactctcatt
tctcagtcctatcttctgtgccgcttgaggttgatttcatattctgcctt
tgaatcttgtgtcctcacacgccttctctgtatcttttccacttattcca
agCGCTTTTTGGAGGACGACTTGGAGGCCCTCTATCCTTCCTCTCCCGCC
TCCACCCACACCTCTCTCTTCCACCCTACCCTTCGTGTCCTCTCCCACCC
CTTTCGCGTACTCCATGATTCCCCTGGTGTCGACACGCGCTTTCGGCACC
TCATACCTCCACCCATCACTGGAGGGAGGGATGGAAGGAAGGAGGGAGGG
CGACAGCGACCACGTTTACTCTTGGCTATCGGGCCCGAGTCCGGGTGGGA
Tgtaagtttgagaatttgagaggagaataggaggcgatggaaatatcaga
agctggtcactgcctcaaagtcacttactcctcaaagtcacttacactca
catccatacacgaattgtacgcctgaataacgaacatgcctacacatgtg
agatatacgcacgacacattcatcactcctaacttaatttcgcttccttt
ttgatgtacaattttcagGAGCCGTACGAGTTGGATCTTTTTCGGCAGCA
CGGTTTTCAGgtacgttctagcatcatatgccgtttgaagattatgcata
ataggcagggacctctttccacaactcgttattattgtattttacaaaag
ctggcgcgctatcagacactccattattgccatgtgtcgctaacttcccc
tctctagagccttagactaaaccgcacaccccactcatgcaacatacgta
cacttgcaacgacagCAAGTCACTTTGGGTCCCCGCGTGTTGCGAACTGA
GGCTGCAGTCCCAGCCTTGGTGGCCTTGGCACATGACCGTTTGCACGCAC
TCGACGAGCAGTGGGAGCTTGAGGTGGCGCAGGCAGAGACGAGGATCTTA
GCAAATTGGAATGGTAGTACCGCTGCTATATGTACCGCTGCTATAGATGA
TTGTGCAAGCGTTACAAAAGAACAATAGCAAATAATTGCCTTGTAAGCGG
GCTGCGATATGCATTCTTGT
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protein sequence of NO01G05440.2

>NO01G05440.2-protein ID=NO01G05440.2-protein|Name=NO01G05440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MGQEHRTSRSSGAGREGYSKTFRPLSGRNFCLLLHCAPFVMMAAAAAGGR
RTPGLQMLSTLRTRGWDVLSGMVSSTSTNNCRRRGLPSSSFGFVLPSATP
SQTAGVAIRRQWEAPIKTTTTTTTRRTISGSPPLPLNRLLFEPEEVIAMP
QQQQQQQKKKKKALEDATAVVRIAKDDARSRHVRKILRAQSGDCVRVGVL
NGGRNDEAPVEWEADGSLRIALGPASSLLRPPPEDERPRVDVLLAMQAPL
RMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLS
QAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHP
FRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWD
VSLRI*
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protein sequence of NO01G05440.1

>NO01G05440.1-protein ID=NO01G05440.1-protein|Name=NO01G05440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MGQEHRTSRSSGAGREGYSKTFRPLSGRNFCLLLHCAPFVMMAAAAAGGR
RTPGLQMLSTLRTRGWDVLSGMVSSTSTNNCRRRGLPSSSFGFVLPSATP
SQTAGVAIRRQWEAPIKTTTTTTTRRTISGSPPLPLNRLLFEPEEVIAMP
QQQQQQQKKKKKALEDATAVVRIAKDDARSRHVRKILRAQSGDCVRVGVL
NGGRNDEAPVEWEADGSLRIALGPASSLLRPPPEDERPRVDVLLAMQAPL
RMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLS
QAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHP
FRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWD
EPYELDLFRQHGFQQVTLGPRVLRTEAAVPALVALAHDRLHALDEQWELE
VAQAETRILANWNGSTAAICTAAIDDCASVTKEQ*
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