NO01G05440.2, NO01G05440.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05440.2
Unique NameNO01G05440.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2992
Alignment locationchr1:1491307..1495526 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1491307..1495526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G05440.2 vs.
Match: EWM22762.1 (16s ribosomal rna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 239.2 bits (609), Expect = 2.200e-59
Identity = 122/161 (75.78%), Postives = 133/161 (82.61%), Query Frame = 0
Query:  240 VDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWD 401
            VDVLLAMQAPLRMERIIPH+VALGVGRLLITSAKKVEKSYWGSHLLREP ALR+LV+EGLSQAGDT VPDIII+RR+KRFL D LE LYPSSP+ + +S F  TLRVLSHPFR LHDS GVDTRFR L  P        + E    +PRLLLAIGPESGW+
Sbjct:  188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWE 348          
The following BLAST results are available for this feature:
BLAST of NO01G05440.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22762.12.200e-5975.7816s ribosomal rna methyltransferase [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05440NO01G05440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05440.2NO01G05440.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05440.2.cds1NO01G05440.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05440.2.cds2NO01G05440.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05440.2.cds3NO01G05440.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05440.2.cds4NO01G05440.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05440.2.cds5NO01G05440.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05440.2.cds6NO01G05440.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05440.2.cds7NO01G05440.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05440.2.cds8NO01G05440.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05440.2 ID=NO01G05440.2|Name=NO01G05440.2|organism=Nannochloropsis oceanica|type=mRNA|length=2992bp
TTCATTATAGAGGTTGTAGACTGTCAAGTGGAGATATGAGAGACGGGTGA
GATTGTCGGACTGCGAAAAGGTGGCTCAGTTGCGCAGCGATCCGCTGAGC
TGGGACACGCACAACTCTTTAAGACCTCGTTTGTGTATGTGTGTGATACA
TACGCACATACACATACACACACGCACACACCCACATACACACGCACAAT
ACATCTCTGTACGGTGCTTGAAGACGCAGATCGCATAATATGCCACATTT
CTTTCACTGCAACCAATCTGCAGTGCCCAAGGGTACACAGTTACCCCAAA
AGCCACACAATGCTCTTGTTTACCCATTATCATGACGTGATACCGTTGGG
ACGCAAATAAACGCTTCGTGAAGAGCTATACTACCCGCACGGGGGTGTTT
GCGCGGTGAGTAAAATGTCCGAGCGGTAGCACGGGTGAACAAATGATGCC
CTATCTTCTGTGTCAAGAAACGGGTCATATTCAGAAGACCCTGTGTAATG
ATTTTCGGCGCACGTCCTTGGTCTCACGCGCACGCAGACCCTCTCCTCTG
GGAGGGAACTAACATCCACCCCATTTGCGTGCCAGTGCTCTGTCGCTATT
CCCCGGGTGCCTGAAGTAGTCAAGCTAATGGCAAGCCACCACATAGTACG
AGGTTACAAAAGATTAGCATAGTCCTGTGTTGCACGCGTTGGGTAGAGTT
GATCAGCCGTATCAGACGCCATTTACAAAAGCGCCTCGTGTGTATCGTTT
GTATCACTGACTTCCATAGCCATCACGCCCATCACACCCAGCACATAAGT
CCACAAACCACAATATTATGAGAGGTTGTAGTCATGTCGACAATGGACAC
AAGACAGAGTGCGAGACACACTCATGCATCGCGTGATCGAGGGAAAAGAG
GAGCAAATGAACGAGGGCAGGAGACGAGGAGTGGAGCCGCATGATCCCAA
ATGATGCTTTTCTTGATTCCTGATAACTTTCAGGTAAACTTATTTTTTTC
ATCACATCATTTTCCGAGCCAGTCAGTCCTGCGGATGCATTCCCGTCTGT
GAACTTCTTACCGTTGACCGCTGATGGGGCAGGAGCATCGAACGTCACGT
TCATCAGGAGCAGGGCGTGAAGGCTACAGCAAGACCTTTCGACCCCTCAG
TGGACGTAATTTTTGCCTGCTCTTGCATTGCGCCCCATTCGTGATGATGG
CAGCTGCGGCGGCTGGCGGCCGGCGGACTCCAGGCTTGCAAATGTTGAGT
ACTCTGAGGACGAGAGGGTGGGATGTCCTCTCGGGAATGGTCAGCAGCAC
CAGCACCAACAACTGCAGGAGGAGGGGCTTGCCTTCTTCGTCCTTTGGCT
TTGTCCTACCATCTGCAACGCCATCACAGACGGCGGGAGTAGCAATACGA
AGACAATGGGAGGCTCCCATCAAAACCACCACTACCACCACCACCAGAAG
GACAATTTCTGGCTCCCCTCCTCTGCCATTGAACCGCCTGCTTTTCGAGC
CCGAGGAGGTCATTGCGATGCCGCAGCAACAGCAGCAGCAGCAGAAGAAG
AAGAAGAAAGCACTGGAAGACGCCACGGCAGTCGTTCGGATAGCCAAAGA
CGACGCGCGATCGCGGCATGTGCGAAAGATCCTTCGTGCTCAGTCTGGAG
ATTGCGTGCGTGTTGGTGTTCTGAACGGGGGCCGGAATGACGAGGCGCCT
GTCGAGTGGGAGGCAGATGGCAGTCTTCGCATTGCTCTGGGTCCCGCCTC
CAGCCTCTTGCGACCCCCTCCGGAAGATGAGCGTCCTCGGGTTGACGTTC
TCCTAGCCATGCAAGCTCCTTTGCGGATGGAGCGCATTATCCCTCATATC
GTCGCTTTGGGCGTAGGCCGCCTTCTGATTACCTCGGCCAAGAAGGTGGA
GAAGAGCTACTGGGGCTCGCATCTGCTGCGAGAGCCGGACGCCCTCCGAG
ACCTAGTCATAGAGGGCCTCAGCCAGGCTGGCGATACCTTTGTTCCCGAC
ATCATCATTAATCGCCGCGTAAAGCGCTTTTTGGAGGACGACTTGGAGGC
CCTCTATCCTTCCTCTCCCGCCTCCACCCACACCTCTCTCTTCCACCCTA
CCCTTCGTGTCCTCTCCCACCCCTTTCGCGTACTCCATGATTCCCCTGGT
GTCGACACGCGCTTTCGGCACCTCATACCTCCACCCATCACTGGAGGGAG
GGATGGAAGGAAGGAGGGAGGGCGACAGCGACCACGTTTACTCTTGGCTA
TCGGGCCCGAGTCCGGGTGGGATGTAAGTTTGAGAATTTGAGAGGAGAAT
AGGAGGCGATGGAAATATCAGAAGCTGGTCACTGCCTCAAAGTCACTTAC
TCCTCAAAGTCACTTACACTCACATCCATACACGAATTGTACGCCTGAAT
AACGAACATGCCTACACATGTGAGATATACGCACGACACATTCATCACTC
CTAACTTAATTTCGCTTCCTTTTTGATGTACAATTTTCAGGAGCCGTACG
AGTTGGATCTTTTTCGGCAGCACGGTTTTCAGGTACGTTCTAGCATCATA
TGCCGTTTGAAGATTATGCATAATAGGCAGGGACCTCTTTCCACAACTCG
TTATTATTGTATTTTACAAAAGCTGGCGCGCTATCAGACACTCCATTATT
GCCATGTGTCGCTAACTTCCCCTCTCTAGAGCCTTAGACTAAACCGCACA
CCCCACTCATGCAACATACGTACACTTGCAACGACAGCAAGTCACTTTGG
GTCCCCGCGTGTTGCGAACTGAGGCTGCAGTCCCAGCCTTGGTGGCCTTG
GCACATGACCGTTTGCACGCACTCGACGAGCAGTGGGAGCTTGAGGTGGC
GCAGGCAGAGACGAGGATCTTAGCAAATTGGAATGGTAGTACCGCTGCTA
TATGTACCGCTGCTATAGATGATTGTGCAAGCGTTACAAAAGAACAATAG
CAAATAATTGCCTTGTAAGCGGGCTGCGATATGCATTCTTGT
back to top

protein sequence of NO01G05440.2

>NO01G05440.2-protein ID=NO01G05440.2-protein|Name=NO01G05440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MGQEHRTSRSSGAGREGYSKTFRPLSGRNFCLLLHCAPFVMMAAAAAGGR
RTPGLQMLSTLRTRGWDVLSGMVSSTSTNNCRRRGLPSSSFGFVLPSATP
SQTAGVAIRRQWEAPIKTTTTTTTRRTISGSPPLPLNRLLFEPEEVIAMP
QQQQQQQKKKKKALEDATAVVRIAKDDARSRHVRKILRAQSGDCVRVGVL
NGGRNDEAPVEWEADGSLRIALGPASSLLRPPPEDERPRVDVLLAMQAPL
RMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLS
QAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHP
FRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWD
VSLRI*
back to top

mRNA from alignment at chr1:1491307..1495526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05440.2 ID=NO01G05440.2|Name=NO01G05440.2|organism=Nannochloropsis oceanica|type=mRNA|length=4220bp|location=Sequence derived from alignment at chr1:1491307..1495526- (Nannochloropsis oceanica)
TTCATTATAGAGGTTGTAGACTGTCAAGTGGAGATATGAGAGACGGGTGA GATTGTCGGACTGCGAAAAGGTGGCTCAGTTGCGCAGCGATCCGCTGAGC TGGGACACGCACAACTCTTTAAGACCTCGTTTGTGTATGTGTGTGATACA TACGCACATACACATACACACACGCACACACCCACATACACACGCACAAT ACATCTCTGTACGGTGCTTGAAGACGCAGATCGCATAATATGCCACATTT CTTTCACTGCAACCAATCTGCAGTGCCCAAGGGTACACAGTTACCCCAAA AGCCACACAATGCTCTTGTTTACCCATTATCATGACGTGATACCGTTGGG ACGCAAATAAACGCTTCGTGAAGAGCTATACTACCCGCACGGGGGTGTTT GCGCGGTGAGTAAAATGTCCGAGCGGTAGCACGGGTGAACAAATGATGCC CTATCTTCTGTGTCAAGAAACGGGTCATATTCAGAAGACCCTGTGTAATG ATTTTCGGCGCACGTCCTTGGTCTCACGCGCACGCAGACCCTCTCCTCTG GGAGGGAACTAACATCCACCCCATTTGCGTGCCAGTGCTCTGTCGCTATT CCCCGGGTGCCTGAAGTAGTCAAGCTAATGGCAAGCCACCACATAGTACG AGGTTACAAAAGATTAGCATAGTCCTGTGTTGCACGCGTTGGGTAGAGTT GATCAGCCGTATCAGACGCCATTTACAAAAGCGCCTCGTGTGTATCGTTT GTATCACTGACTTCCATAGCCATCACGCCCATCACACCCAGCACATAAGT CCACAAACCACAATATTATGAGAGGTTGTAGTCATGTCGACAATGGACAC AAGACAGAGTGCGAGACACACTCATGCATCGCGTGATCGAGGGAAAAGAG GAGCAAATGAACGAGGGCAGGAGACGAGGAGTGGAGCCGCATGATCCCAA ATGATGCTTTTCTTGATTCCTGATAACTTTCAGGTAAACTTATTTTTTTC ATCACATCATTTTCCGAGGTATGGCGCGGTTCACTCGATAGAGGGCATTA CATATTACACTCTCGTACACACGCTCACACATCATGCTTCCTTCTCATTC GACACAGCCAGTCAGTCCTGCGGATGCATTCCCGTCTGTGAACTTCTTAC CGTTGACCGCTGATGGGGCAGGAGCATCGAACGTCACGTTCATCAGGAGC AGGGCGTGAAGGCTACAGCAAGACCTTTCGACCCCTCAGTGGACGTAATT TTTGCCTGCTCTTGCATTGCGCCCCATTCGTGATGATGGCAGCTGCGGCG GCTGGCGGCCGGCGGACTCCAGGCTTGCAAATGTTGAGTACTCTGAGGAC GAGAGGGTGGGATGTCCTCTCGGGAATGGTCAGCAGCACCAGCACCAACA ACTGCAGGAGGAGGGGCTTGCCTTCTTCGTCCTTTGGCTTTGTCCTACCA TCTGCAACGCCATCACAGACGGCGGGAGTAGCAATACGAAGACAATGGGA GGCTCCCATCAAAACCACCACTACCACCACCACCAGAAGGACAATTTCTG GCTCCCCTCCTCTGCCATTGAACCGCCTGCTTTTCGAGCCCGAGGAGGTC ATTGCGATGCCGCAGCAACAGCAGCAGCAGCAGAAGAAGAAGAAGAAAGC ACTGGAAGACGCCACGGCAGTCGTTCGGATAGCCAAAGACGACGCGCGAT CGCGGCATGTGCGAAAGGTGAAAAAGGGTGAAGAGGTGAAGAGAGAGGGG CGCTGAATATCTGCTGAATTTTCGAGTCAGCATTTGTCTGTGTACTAGGC GCATACATACTTATGTGTGCCTACCTCCCCGTCTCTTTCCCTCCCCCTCC CTCCCTCCCTACCTCTCTCCCCGACTATTCTATCAAGATCCTTCGTGCTC AGTCTGGAGATTGCGTGCGTGTTGGTGTTCTGAACGGGGGCCGGTGAGTG CTTGAATGGGCTTTTAAAATGGCAAGGGTTAAGGAATAATAAAGGAAGAA ATATGTGGTGAGGATGGTCGGGAGGAGGAGGGTACCTTGGTGTGTTCGTA CTCATGCTCCTCATGACTTCATCGACCACGCTTACAGGAATGACGAGGCG CCTGTCGAGTGGGAGGCAGATGGCAGTCTTCGCATTGCTCTGGGTCCCGC CTCCAGCCTCTTGCGACCCCCTCCGGAAGATGAGCGTCCTCGGTACGTCA TTCCCCACTGTTATGGAAGCTCTCTTTCTGCCGTTCCCTTACTCCTTCCC TCCCTCCCTTCCCTTCTCTTCTCCTCTCGCTCATCAGGGTTGACGTTCTC CTAGCCATGCAAGCTCCTTTGCGGATGGAGCGCATTATCCCTCATATCGT CGCTTTGGGCGTAGGCCGCCTTCTGATTACCTCGGCCAAGAAGGTAGGGA AGGAGGGAAGGAGGGGGGATCTCGCTCAAATCGTGGTAGATCATTCCACG AAGATTGAATGAAGAGAGAAAGGCGGAGGCATGTACATGCACCTACTTGA CCCTCATCCCTCGTCCCTTACTTATACGCAGGTGGAGAAGAGCTACTGGG GCTCGCATCTGCTGCGAGAGCCGGTAAGTCCGCCTGAACCACCGGAGGGA CGCAGGGAGCAAGGGAGGGATTGAGAGAAGGGAAAACCAAGAGATGGTTG ATTCATTTGGAGGGGCAAGATTGTATTATTAGACTCCTTTGCCTCTTTTT CGTAGTGTCTTATTGTCTTACGTATTCTTTCCTTTCTATCACCCCATCCA TTATATTAGGACGCCCTCCGAGACCTAGTCATAGAGGGCCTCAGCCAGGT AGGCACGGAGATGGACGGCCTTGCTCGCTGCCTTCCTGTACTCTATATCT CTCTTTTTTTCCTCTATCTCTCCCTCTTCGTCCCTCTTTATCTTCCTTTC TTTCTTTTCCCCCTCTCTCTCTCTCTTTCTTTCTCTTTCCCCCTCTCCCT CTTTCTTTCCAACTCACACATTATTTTTTCTCTAATGATTCTTCGGCTTA CAATATATTCCCCTTCGTCCATGCGTTCCCCCTCTCGTCCAGGCTGGCGA TACCTTTGTTCCCGACATCATCATTAATCGCCGCGTAAAGGTACGTACGC TCTGAAAATGCTTAACAGCTCTTTTTCCTCCTCAGTGTCGCACTCTCATT TCTCAGTCCTATCTTCTGTGCCGCTTGAGGTTGATTTCATATTCTGCCTT TGAATCTTGTGTCCTCACACGCCTTCTCTGTATCTTTTCCACTTATTCCA AGCGCTTTTTGGAGGACGACTTGGAGGCCCTCTATCCTTCCTCTCCCGCC TCCACCCACACCTCTCTCTTCCACCCTACCCTTCGTGTCCTCTCCCACCC CTTTCGCGTACTCCATGATTCCCCTGGTGTCGACACGCGCTTTCGGCACC TCATACCTCCACCCATCACTGGAGGGAGGGATGGAAGGAAGGAGGGAGGG CGACAGCGACCACGTTTACTCTTGGCTATCGGGCCCGAGTCCGGGTGGGA TGTAAGTTTGAGAATTTGAGAGGAGAATAGGAGGCGATGGAAATATCAGA AGCTGGTCACTGCCTCAAAGTCACTTACTCCTCAAAGTCACTTACACTCA CATCCATACACGAATTGTACGCCTGAATAACGAACATGCCTACACATGTG AGATATACGCACGACACATTCATCACTCCTAACTTAATTTCGCTTCCTTT TTGATGTACAATTTTCAGGAGCCGTACGAGTTGGATCTTTTTCGGCAGCA CGGTTTTCAGGTACGTTCTAGCATCATATGCCGTTTGAAGATTATGCATA ATAGGCAGGGACCTCTTTCCACAACTCGTTATTATTGTATTTTACAAAAG CTGGCGCGCTATCAGACACTCCATTATTGCCATGTGTCGCTAACTTCCCC TCTCTAGAGCCTTAGACTAAACCGCACACCCCACTCATGCAACATACGTA CACTTGCAACGACAGCAAGTCACTTTGGGTCCCCGCGTGTTGCGAACTGA GGCTGCAGTCCCAGCCTTGGTGGCCTTGGCACATGACCGTTTGCACGCAC TCGACGAGCAGTGGGAGCTTGAGGTGGCGCAGGCAGAGACGAGGATCTTA GCAAATTGGAATGGTAGTACCGCTGCTATATGTACCGCTGCTATAGATGA TTGTGCAAGCGTTACAAAAGAACAATAGCAAATAATTGCCTTGTAAGCGG GCTGCGATATGCATTCTTGT
back to top

Coding sequence (CDS) from alignment at chr1:1491307..1495526-

>NO01G05440.2 ID=NO01G05440.2|Name=NO01G05440.2|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr1:1491307..1495526- (Nannochloropsis oceanica)
ATGGGGCAGGAGCATCGAACGTCACGTTCATCAGGAGCAGGGCGTGAAGG
CTACAGCAAGACCTTTCGACCCCTCAGTGGACGTAATTTTTGCCTGCTCT
TGCATTGCGCCCCATTCGTGATGATGGCAGCTGCGGCGGCTGGCGGCCGG
CGGACTCCAGGCTTGCAAATGTTGAGTACTCTGAGGACGAGAGGGTGGGA
TGTCCTCTCGGGAATGGTCAGCAGCACCAGCACCAACAACTGCAGGAGGA
GGGGCTTGCCTTCTTCGTCCTTTGGCTTTGTCCTACCATCTGCAACGCCA
TCACAGACGGCGGGAGTAGCAATACGAAGACAATGGGAGGCTCCCATCAA
AACCACCACTACCACCACCACCAGAAGGACAATTTCTGGCTCCCCTCCTC
TGCCATTGAACCGCCTGCTTTTCGAGCCCGAGGAGGTCATTGCGATGCCG
CAGCAACAGCAGCAGCAGCAGAAGAAGAAGAAGAAAGCACTGGAAGACGC
CACGGCAGTCGTTCGGATAGCCAAAGACGACGCGCGATCGCGGCATGTGC
GAAAGATCCTTCGTGCTCAGTCTGGAGATTGCGTGCGTGTTGGTGTTCTG
AACGGGGGCCGGAATGACGAGGCGCCTGTCGAGTGGGAGGCAGATGGCAG
TCTTCGCATTGCTCTGGGTCCCGCCTCCAGCCTCTTGCGACCCCCTCCGG
AAGATGAGCGTCCTCGGGTTGACGTTCTCCTAGCCATGCAAGCTCCTTTG
CGGATGGAGCGCATTATCCCTCATATCGTCGCTTTGGGCGTAGGCCGCCT
TCTGATTACCTCGGCCAAGAAGGTGGAGAAGAGCTACTGGGGCTCGCATC
TGCTGCGAGAGCCGGACGCCCTCCGAGACCTAGTCATAGAGGGCCTCAGC
CAGGCTGGCGATACCTTTGTTCCCGACATCATCATTAATCGCCGCGTAAA
GCGCTTTTTGGAGGACGACTTGGAGGCCCTCTATCCTTCCTCTCCCGCCT
CCACCCACACCTCTCTCTTCCACCCTACCCTTCGTGTCCTCTCCCACCCC
TTTCGCGTACTCCATGATTCCCCTGGTGTCGACACGCGCTTTCGGCACCT
CATACCTCCACCCATCACTGGAGGGAGGGATGGAAGGAAGGAGGGAGGGC
GACAGCGACCACGTTTACTCTTGGCTATCGGGCCCGAGTCCGGGTGGGAT
GTAAGTTTGAGAATTTGA
back to top
Synonyms
Publications