Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr1 genome chr1:1491307..1495526 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05440.2 vs.
Match: EWM22762.1 (16s ribosomal rna methyltransferase [Nannochloropsis gaditana])
HSP 1 Score: 239.2 bits (609), Expect = 2.200e-59
Identity = 122/161 (75.78%), Postives = 133/161 (82.61%), Query Frame = 0
Query: 240 VDVLLAMQAPLRMERIIPHIVALGVGRLLITSAKKVEKSYWGSHLLREPDALRDLVIEGLSQAGDTFVPDIIINRRVKRFLEDDLEALYPSSPASTHTSLFHPTLRVLSHPFRVLHDSPGVDTRFRHLIPPPITGGRDGRKEGGRQRPRLLLAIGPESGWD 401
VDVLLAMQAPLRMERIIPH+VALGVGRLLITSAKKVEKSYWGSHLLREP ALR+LV+EGLSQAGDT VPDIII+RR+KRFL D LE LYPSSP+ + +S F TLRVLSHPFR LHDS GVDTRFR L P + E +PRLLLAIGPESGW+
Sbjct: 188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWE 348
The following BLAST results are available for this feature:
BLAST of NO01G05440.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 Expect = 2.20e-59 / Id = 75.78 Sequence EWM22762.1
Match Name E-value Identity Description
EWM22762.1 2.200e-59 75.78 16s ribosomal rna methyltransferase [Nannochlorops... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO01G05440.2 ID=NO01G05440.2|Name=NO01G05440.2|organism=Nannochloropsis oceanica|type=mRNA|length=2992bp back to top protein sequence of NO01G05440.2
>NO01G05440.2-protein ID=NO01G05440.2-protein|Name=NO01G05440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp back to top mRNA from alignment at chr1:1491307..1495526-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05440.2 ID=NO01G05440.2|Name=NO01G05440.2|organism=Nannochloropsis oceanica|type=mRNA|length=4220bp|location=Sequence derived from alignment at chr1:1491307..1495526- (Nannochloropsis oceanica)ATGGGGCAGGAGCATCGAACGTCACGTTCATCAGGAGC
AGGGCGTGAAGGCTACAGCAAGACCTTTCGACCCCTCAGTGGACGTAATT
TTTGCCTGCTCTTGCATTGCGCCCCATTCGTGATGATGGCAGCTGCGGCG
GCTGGCGGCCGGCGGACTCCAGGCTTGCAAATGTTGAGTACTCTGAGGAC
GAGAGGGTGGGATGTCCTCTCGGGAATGGTCAGCAGCACCAGCACCAACA
ACTGCAGGAGGAGGGGCTTGCCTTCTTCGTCCTTTGGCTTTGTCCTACCA
TCTGCAACGCCATCACAGACGGCGGGAGTAGCAATACGAAGACAATGGGA
GGCTCCCATCAAAACCACCACTACCACCACCACCAGAAGGACAATTTCTG
GCTCCCCTCCTCTGCCATTGAACCGCCTGCTTTTCGAGCCCGAGGAGGTC
ATTGCGATGCCGCAGCAACAGCAGCAGCAGCAGAAGAAGAAGAAGAAAGC
ACTGGAAGACGCCACGGCAGTCGTTCGGATAGCCAAAGACGACGCGCGAT
CGCGGCATGTGCGAAAG GTGAAAAAGGGTGAAGAGGTGAAGAGAGAGGGG
CGCTGAATATCTGCTGAATTTTCGAGTCAGCATTTGTCTGTGTACTAGGC
GCATACATACTTATGTGTGCCTACCTCCCCGTCTCTTTCCCTCCCCCTCC
CTCCCTCCCTACCTCTCTCCCCGACTATTCTATCAAGATCCTTCGTGCTC
AGTCTGGAGATTGCGTGCGTGTTGGTGTTCTGAACGGGGGCCG GTGAGTG
CTTGAATGGGCTTTTAAAATGGCAAGGGTTAAGGAATAATAAAGGAAGAA
ATATGTGGTGAGGATGGTCGGGAGGAGGAGGGTACCTTGGTGTGTTCGTA
CTCATGCTCCTCATGACTTCATCGACCACGCTTACAGGAATGACGAGGCG
CCTGTCGAGTGGGAGGCAGATGGCAGTCTTCGCATTGCTCTGGGTCCCGC
CTCCAGCCTCTTGCGACCCCCTCCGGAAGATGAGCGTCCTCG GTACGTCA
TTCCCCACTGTTATGGAAGCTCTCTTTCTGCCGTTCCCTTACTCCTTCCC
TCCCTCCCTTCCCTTCTCTTCTCCTCTCGCTCATCAGGGTTGACGTTCTC
CTAGCCATGCAAGCTCCTTTGCGGATGGAGCGCATTATCCCTCATATCGT
CGCTTTGGGCGTAGGCCGCCTTCTGATTACCTCGGCCAAGAAG GTAGGGA
AGGAGGGAAGGAGGGGGGATCTCGCTCAAATCGTGGTAGATCATTCCACG
AAGATTGAATGAAGAGAGAAAGGCGGAGGCATGTACATGCACCTACTTGA
CCCTCATCCCTCGTCCCTTACTTATACGCAGGTGGAGAAGAGCTACTGGG
GCTCGCATCTGCTGCGAGAGCCG GTAAGTCCGCCTGAACCACCGGAGGGA
CGCAGGGAGCAAGGGAGGGATTGAGAGAAGGGAAAACCAAGAGATGGTTG
ATTCATTTGGAGGGGCAAGATTGTATTATTAGACTCCTTTGCCTCTTTTT
CGTAGTGTCTTATTGTCTTACGTATTCTTTCCTTTCTATCACCCCATCCA
TTATATTAGGACGCCCTCCGAGACCTAGTCATAGAGGGCCTCAGCCAG GT
AGGCACGGAGATGGACGGCCTTGCTCGCTGCCTTCCTGTACTCTATATCT
CTCTTTTTTTCCTCTATCTCTCCCTCTTCGTCCCTCTTTATCTTCCTTTC
TTTCTTTTCCCCCTCTCTCTCTCTCTTTCTTTCTCTTTCCCCCTCTCCCT
CTTTCTTTCCAACTCACACATTATTTTTTCTCTAATGATTCTTCGGCTTA
CAATATATTCCCCTTCGTCCATGCGTTCCCCCTCTCGTCCAGGCTGGCGA
TACCTTTGTTCCCGACATCATCATTAATCGCCGCGTAAAG GTACGTACGC
TCTGAAAATGCTTAACAGCTCTTTTTCCTCCTCAGTGTCGCACTCTCATT
TCTCAGTCCTATCTTCTGTGCCGCTTGAGGTTGATTTCATATTCTGCCTT
TGAATCTTGTGTCCTCACACGCCTTCTCTGTATCTTTTCCACTTATTCCA
AGCGCTTTTTGGAGGACGACTTGGAGGCCCTCTATCCTTCCTCTCCCGCC
TCCACCCACACCTCTCTCTTCCACCCTACCCTTCGTGTCCTCTCCCACCC
CTTTCGCGTACTCCATGATTCCCCTGGTGTCGACACGCGCTTTCGGCACC
TCATACCTCCACCCATCACTGGAGGGAGGGATGGAAGGAAGGAGGGAGGG
CGACAGCGACCACGTTTACTCTTGGCTATCGGGCCCGAGTCCGGGTGGGA
TGTAAGTTTGAGAATTTGA back to top Coding sequence (CDS) from alignment at chr1:1491307..1495526-
>NO01G05440.2 ID=NO01G05440.2|Name=NO01G05440.2|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr1:1491307..1495526- (Nannochloropsis oceanica) back to top