NO01G05170, NO01G05170 (gene) Nannochloropsis oceanica

Overview
NameNO01G05170
Unique NameNO01G05170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1929
Alignment locationchr1:1372681..1374609 -

Link to JBrowse

Properties
Property NameValue
DescriptionPre-mrna-processing factor 17
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1372681..1374609 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0071013catalytic step 2 spliceosome
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR032847PRPF17
IPR001680WD40_repeat
Homology
[Close]
BLAST of NO01G05170 vs. NCBI_GenBank
Match: ETK72906.1 (hypothetical protein L915_20087 [Phytophthora parasitica])

HSP 1 Score: 490.7 bits (1262), Expect = 6.800e-135
Identity = 235/415 (56.63%), Postives = 288/415 (69.40%), Query Frame = 0 
Query:  233 GPWAPVKG-GPVLTELEAGTLTEEQKRHRKE----LAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            G WAP K     LT+ E GT+ E+QK  R+E           K  G DEE D DR  E+K +HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER  +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S + SCGWDGLIK W+
Sbjct:  194 GIWAPYKDKSKHLTDAEQGTMNEQQKALREEHXXXXXXXXXXKEEG-DEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607
[Close]
BLAST of NO01G05170 vs. NCBI_GenBank
Match: ETL26353.1 (hypothetical protein L916_19960 [Phytophthora parasitica])

HSP 1 Score: 490.7 bits (1262), Expect = 6.800e-135
Identity = 235/415 (56.63%), Postives = 288/415 (69.40%), Query Frame = 0 
Query:  233 GPWAPVKG-GPVLTELEAGTLTEEQKRHRKE----LAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            G WAP K     LT+ E GT+ E+QK  R+E           K  G DEE D DR  E+K +HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER  +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S + SCGWDGLIK W+
Sbjct:  194 GIWAPYKDKSKHLTDAEQGTMNEQQKALREEHXXXXXXXXXXKEEG-DEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607
[Close]
BLAST of NO01G05170 vs. NCBI_GenBank
Match: ETM32820.1 (hypothetical protein L914_19856 [Phytophthora parasitica])

HSP 1 Score: 490.7 bits (1262), Expect = 6.800e-135
Identity = 235/415 (56.63%), Postives = 288/415 (69.40%), Query Frame = 0 
Query:  233 GPWAPVKG-GPVLTELEAGTLTEEQKRHRKE----LAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            G WAP K     LT+ E GT+ E+QK  R+E           K  G DEE D DR  E+K +HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER  +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S + SCGWDGLIK W+
Sbjct:  194 GIWAPYKDKSKHLTDAEQGTMNEQQKALREEHXXXXXXXXXXKEEG-DEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTLRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607
[Close]
BLAST of NO01G05170 vs. NCBI_GenBank
Match: ETO61270.1 (hypothetical protein F444_20689 [Phytophthora parasitica P1976])

HSP 1 Score: 490.7 bits (1262), Expect = 6.800e-135
Identity = 235/415 (56.63%), Postives = 288/415 (69.40%), Query Frame = 0 
Query:  233 GPWAPVKG-GPVLTELEAGTLTEEQKRHRKE----LAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            G WAP K     LT+ E GT+ E+QK  R+E           K  G DEE D DR  E+K +HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER  +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S + SCGWDGLIK W+
Sbjct:  194 GIWAPYKDKSKHLTDAEQGTMNEQQKALREEHXXXXXXXXXXKEEG-DEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607
[Close]
BLAST of NO01G05170 vs. NCBI_GenBank
Match: ETP30564.1 (hypothetical protein F442_20464 [Phytophthora parasitica P10297])

HSP 1 Score: 490.7 bits (1262), Expect = 6.800e-135
Identity = 235/415 (56.63%), Postives = 288/415 (69.40%), Query Frame = 0 
Query:  233 GPWAPVKG-GPVLTELEAGTLTEEQKRHRKE----LAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            G WAP K     LT+ E GT+ E+QK  R+E           K  G DEE D DR  E+K +HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER  +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S + SCGWDGLIK W+
Sbjct:  194 GIWAPYKDKSKHLTDAEQGTMNEQQKALREEHXXXXXXXXXXKEEG-DEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607
[Close]
BLAST of NO01G05170 vs. NCBI_GenBank
Match: KUF84488.1 (Pre-mRNA-processing factor 17 [Phytophthora nicotianae])

HSP 1 Score: 490.7 bits (1262), Expect = 6.800e-135
Identity = 234/415 (56.39%), Postives = 287/415 (69.16%), Query Frame = 0 
Query:  233 GPWAPVKG-GPVLTELEAGTLTEEQK----RHRKELAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            G WAP K     LT+ E GT+ E+QK     H+         K  G DEE D DR  E+K +HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER  +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S + SCGWDGLIK W+
Sbjct:  194 GIWAPYKDKSKHLTDAEQGTMNEQQKALREEHQXXXXXXAEAKEEG-DEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607
[Close]
BLAST of NO01G05170 vs. NCBI_GenBank
Match: XP_008897958.1 (hypothetical protein PPTG_05958 [Phytophthora parasitica INRA-310] >ETN16863.1 hypothetical protein PPTG_05958 [Phytophthora parasitica INRA-310] >KUF93250.1 Arrestin domain-containing protein A [Phytophthora nicotianae])

HSP 1 Score: 487.6 bits (1254), Expect = 5.700e-134
Identity = 232/414 (56.04%), Postives = 285/414 (68.84%), Query Frame = 0 
Query:  233 GPWAPVKG-GPVLTELEAGTLTEEQKRHRKELAERKALKHRGY---DEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            G WAP K     LT+ E GT+ E+QK  R+                DEE D DR  E+K +HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER  +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S + SCGWDGLIK W+
Sbjct:  194 GIWAPYKDKSKHLTDAEQGTMNEQQKALREXXXXXXXXXXXXXEEGDEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607
[Close]
BLAST of NO01G05170 vs. NCBI_GenBank
Match: OWZ16068.1 (Pre-mRNA splicing factor [Phytophthora megakarya])

HSP 1 Score: 482.6 bits (1241), Expect = 1.800e-132
Identity = 219/368 (59.51%), Postives = 269/368 (73.10%), Query Frame = 0 
Query:  275 DEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            DEE D DR  E+K  HLLP R      A E  ++F G  + DYQGR+WVEPP  L+  + DH  ++PK+C H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER  +R Y GH  AVR INF+ DG +FLS GFDRF++LWDTETGQ +++ T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QS++N I ++S RD+FK+  KKVF+GH  AG+ACQ  FSPN +YL SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S V SCGWDGLIK W+
Sbjct:  240 DEEMDFDRMVEKKTGHLLPARLKAGQTALEGKSKFMGDQEYDYQGRAWVEPPRTLKPDDGDHQVFMPKKCIHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRAINFSNDGKQFLSCGFDRFIQLWDTETGQTVNSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSMNNHIDVYSARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYLMSGDGEGKLVFWDWKTTKMIKKLRAHDRGPTMGAIWHPLEPSKVVSCGWDGLIKYWD 607
[Close]
BLAST of NO01G05170 vs. NCBI_GenBank
Match: XP_009522168.1 (putative pre-mRNA splicing factor [Phytophthora sojae] >EGZ19451.1 putative pre-mRNA splicing factor [Phytophthora sojae])

HSP 1 Score: 478.8 bits (1231), Expect = 2.700e-131
Identity = 263/603 (43.62%), Postives = 332/603 (55.06%), Query Frame = 0 
Query:   51 VNSAPFVN-PALKTVLHRPGFIPPTTR-ELTTNVKAATLLAPIQGPQHPHRRDMDVM-----GGTKLATGGYKEEAVMEKWNFHEQFHTFHAQGYARDDVGGGVIGNVANYVKREGLKKPAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPWAPVK-GGPVLTELEAGTLTEEQKRHRKELAERKALKHRG---YDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            VNSAPFV     +   ++  F+   T+ +L  N+   + LAP  GPQ     D+ ++     G  K    G  E+A ME ++F  Q+HT++ Q  +R+              + +G    AP                                                                   G WAP K  G  LT+ E G                           D+E D DR  E+K  HLLP R      A E  + F G  + DYQGR+WVEPP  L+    DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER+ +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FK+  KKVFKGH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S V SCGWDGLIK W+
Sbjct:   34 VNSAPFVALTDRQEEANKAAFLTAGTQTQLAVNLPVESTLAPYVGPQSSGTMDLALVDPLRAGSGKQVVTGVVEQADMEDFSFEAQYHTYN-QTLSRNPARN----------RAKGAPPSAPA------------------LPGEKLADTIVAPGEENVFTSCNAKKRKNQVVSKERAAAEDFGDEATDGIWAPYKEKGKTLTDAEKGXXXXXXXXXXXXXXXXXXXXXXAKEEADDEMDFDRMVEKKTGHLLPARLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRTLKPDNGDHQVFLPKRCVHKWTGHTKGVQAIELFPQYGHLLLSGSMDNTVRIWDVYNERKCQRVYEGHSGAVRGINFSNDGRQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTNFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFKGHQNAGYACQIGFSPNGQYIMSGDGEGKLVFWDWKTTKMIKKLRAHDRGPTMGALWHPLEPSKVISCGWDGLIKYWD 607
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BLAST of NO01G05170 vs. NCBI_GenBank
Match: POM59915.1 (Pre-mRNA splicing factor, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 477.6 bits (1228), Expect = 5.900e-131
Identity = 215/368 (58.42%), Postives = 269/368 (73.10%), Query Frame = 0 
Query:  275 DEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            DEE D DR  E+K  HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPK+C H++ GH KGVQ IE  P  GHLLLSGS+D T ++W VY ER+ +R Y GH  AVR INF+ DG +FLS GFDRF++LWDTETGQ +++ T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QS++N I +++ RD+FK+  KKVF+GH  AG+ACQ  FSPN +++ SGDGEGKL FWD+K+T+ + K RAHD GP +G  WHP+E S V +CGWDGLIK W+
Sbjct:    3 DEEMDFDRMVEKKTGHLLPARLKAGQKALEGKSTFMGDQEYDYQGRAWVEPPRTLKPDDGDHQVFLPKKCVHKWTGHTKGVQTIELFPKYGHLLLSGSMDNTVRIWDVYNERKCQRVYEGHSGAVRAINFSNDGKQFLSCGFDRFIQLWDTETGQAVNSFTTRRVPYCVKFYPMDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSMNNHIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQFIMSGDGEGKLVFWDWKSTKLIKKLRAHDRGPTMGAIWHPLEPSKVVTCGWDGLIKYWD 370
The following BLAST results are available for this feature:
BLAST of NO01G05170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETK72906.16.800e-13556.63hypothetical protein L915_20087 [Phytophthora para... [more]
ETL26353.16.800e-13556.63hypothetical protein L916_19960 [Phytophthora para... [more]
ETM32820.16.800e-13556.63hypothetical protein L914_19856 [Phytophthora para... [more]
ETO61270.16.800e-13556.63hypothetical protein F444_20689 [Phytophthora para... [more]
ETP30564.16.800e-13556.63hypothetical protein F442_20464 [Phytophthora para... [more]
KUF84488.16.800e-13556.39Pre-mRNA-processing factor 17 [Phytophthora nicoti... [more]
XP_008897958.15.700e-13456.04hypothetical protein PPTG_05958 [Phytophthora para... [more]
OWZ16068.11.800e-13259.51Pre-mRNA splicing factor [Phytophthora megakarya][more]
XP_009522168.12.700e-13143.62putative pre-mRNA splicing factor [Phytophthora so... [more]
POM59915.15.900e-13158.42Pre-mRNA splicing factor, partial [Phytophthora pa... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007741NSK007741Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05170.1NO01G05170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577659gene_548Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100083g16gene1176Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05170.1NO01G05170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05170 ID=NO01G05170|Name=NO01G05170|organism=Nannochloropsis oceanica|type=gene|length=1929bp
ATGGACTCAATATTTAACGCCTACGGGAGTGATAGCGACTCAGAGAGCAT
CTCACCCGCATCCTCCACGTCCACCGCCGCCTCCTCAGCTGCTGCCCCTG
CAACCGCTAGTGCTGCCAGCGCCCAGCCCGTGCACCTTGTCCGCCGTACC
GTCAACTCGGCCCCCTTCGTGAATCCCGCTCTCAAGACCGTTTTGCACCG
GCCTGGCTTCATCCCACCTACCACGCGGGAGCTCACAACCAACGTCAAAG
CGGCCACGCTGTTGGCTCCTATCCAAGGCCCACAGCACCCTCACAGGCGT
GACATGGACGTGATGGGCGGTACCAAGCTGGCCACGGGCGGCTACAAGGA
AGAAGCAGTGATGGAAAAATGGAATTTTCACGAACAATTCCACACGTTTC
ACGCGCAGGGCTATGCGAGGGATGATGTGGGCGGGGGAGTGATTGGAAAT
GTGGCGAATTATGTGAAGAGAGAGGGGCTGAAGAAGCCGGCTCCTGTGGG
GCTGAAGAAGCCGGCTCCTGTGGCGGCCTCGGCCGGAGGGGCCCTGACAA
GAGCAGGCGGAGGAAGAGGGAAACGAGAAGAAGAGAAAATGACGGCACAG
CAACAACAGGAGCGACAGCAACAAATACAGCAACAGCGGCGGAAGCGGAA
GATGGAGGCAGGGGAGGAGGAGGAGGAGTTGGGGGAGGAGGATGACGGGC
CATGGGCGCCCGTGAAGGGCGGCCCAGTCCTGACAGAGCTGGAGGCAGGA
ACGCTAACGGAAGAACAAAAGCGACACCGGAAGGAGCTGGCGGAGCGGAA
GGCGCTTAAGCACAGGGGGTACGACGAGGAGGAGGATCACGATCGACGGG
ACGAACGGAAGGTGGCTCATTTATTGCCGCCGCGGCATGACCGAGATACG
GTCGCGTCTGAGCCCAGCACGCAATTCCATGGCAAGGGCCAGAAAGACTA
TCAGGGCCGGTCATGGGTGGAGCCACCGGCGGGGCTGCGGGAGGTGGAGA
CGGACCACCCTTGTTATTTGCCCAAGCGGTGTACGCACAGGTATGCGGGG
CATGAGAAGGGGGTGCAAGCTATTGAGTTCTCCCCTGGCACCGGCCACTT
GCTTTTATCCGGATCGCTGGATGGGACATGTAAGATGTGGTCTGTGTATG
GCGAGCGGCAGCTGCGGAGGACGTACTCGGGGCATGGAGCAGCGGTGCGA
TGTATTAATTTCAATGCAGATGGCACGCGCTTCTTGAGCGGGGGCTTCGA
TCGGTTTTTGCGGTTGTGGGACACGGAGACGGGGCAGTGCATCTCGACGG
TGACCAACCGGAAAGTGCCGTATGCAGCAAAGTTCTACCCGCCCAACGAT
AAGTTGTTTGTTTTTGCGGCGTCGGATAACAGGCTTTACACGTTTGATTG
GACGTCGGGGGAGATGGTGCAGGAATATAACCACCACTTGTCAGCCGTGA
ACACCGTCACTTTCTACGACAATAACACGAAGTTTGCCTCCACTTCGGAT
GATAAGAAGATGCTGTTGTGGGAGTGGGATATTCCGGTACCGATCAAGTA
CATCGCTGAGCCCGGTATGCACTCAATGCCTGCCGTCACCCCCTCCCCAG
ATGGAGGCTTTGTCGCCTGTCAGTCTCTAGATAACACCATTAAGATCTTT
TCTTGCCGCGATCGCTTCAAGCTTTTGCACAAGAAGGTGTTCAAGGGGCA
TACTATCGCAGGTTTTGCGTGTCAGCCGGCATTTTCACCGAACAATCGGT
ACCTGGCTTCAGGGGATGGGGAAGGGAAGTTGCATTTTTGGGACTTTAAG
AACACGCGGTCTTTGGCAAAGTATCGGGCGCATGACAACGGCCCTTGCAT
TGGCTTGACCTGGCACCCTGTGGAATCATCCATGGTCGCATCATGTGGTT
GGGACGGATTGATCAAGCTTTGGGAGTAG
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protein sequence of NO01G05170.1

>NO01G05170.1-protein ID=NO01G05170.1-protein|Name=NO01G05170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=643bp
MDSIFNAYGSDSDSESISPASSTSTAASSAAAPATASAASAQPVHLVRRT
VNSAPFVNPALKTVLHRPGFIPPTTRELTTNVKAATLLAPIQGPQHPHRR
DMDVMGGTKLATGGYKEEAVMEKWNFHEQFHTFHAQGYARDDVGGGVIGN
VANYVKREGLKKPAPVGLKKPAPVAASAGGALTRAGGGRGKREEEKMTAQ
QQQERQQQIQQQRRKRKMEAGEEEEELGEEDDGPWAPVKGGPVLTELEAG
TLTEEQKRHRKELAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDT
VASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAG
HEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVR
CINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPND
KLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSD
DKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIF
SCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFK
NTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE*
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Synonyms
Publications