NO01G05170.1, NO01G05170.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G05170.1
Unique Name	NO01G05170.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1929
Alignment location	chr1:1372681..1374609 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1372681..1374609 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G05170.1 vs.
Match: EWM29450.1 (pre-mrna-processing factor 17 [Nannochloropsis gaditana])

HSP 1 Score: 1035.0 bits (2675), Expect = 9.600e-299
Identity = 510/645 (79.07%), Postives = 553/645 (85.74%), Query Frame = 0

Query:    1 MDSIFNAYGSDSDSESISPASSTSTAASSAAAPATASAASAQPV---HLVRRTVNSAPFVNPALKTVLHRPGFIPPTTRELTTNVKAATLLAPIQGPQHPHRRDMDVMGGTKLATGGYKEEAVMEKWNFHEQFHTFHAQGYARDDVGGGVIGNVANYVKREGLKKPAPVGLKKPAPVAASAGGALTRAGGGRGKREEEKMTAQQQQERQQQIQQQRRKRKMEAGEEEEELGEEDDGPWAPVKGGPVLTELEAGTLTEEQKRHRKELAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            MD+I NAYGSDSD+ES      T T  SS+A  +T S++ + P    +LV R+VNSAPFVNPALKTV++RPGFIPPT+RELTTNVKAATLLAPIQGP+HP RR+MD MGGTKLATGGYKE+AVMEKWNFHEQFHTFHAQGYARDDV GG+IGNV NY+++EGL+ PA        P A +AG     +G           TA +   R          RK +  EE+E+LGEE+DGPWAP K  PV+T+LEAGTLTEEQKRHR ELAERKA KHRGYDE+ED DRRDERKVAHLLPPRHDRDTVASEP+TQFHGKG+ DYQGRSWVEPP GLR VETDH CYLPKRC HRY GH KGVQAIEF PGTGHLLLS SLDGTCK+WSVY ERQLRRTYSGH AAVRCINF+ DG+RFLSGGFDRFLRLWDTETGQCIST+TNRKVPYAAKFYPPND LF+FAASDNRLYT+DW+SGEMVQEYNHHLSAVNTVTFYDNN++FASTSDDKKMLLWEWDI VPIKYIAEPGMHSMPAVTPSP G FVACQSLDNTIKIF CRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTR+LAKYRAHDNGPCIGL WHPVE+SMVASCGWDGLIKLWE
Sbjct:    1 MDTITNAYGSDSDTES------TPTGVSSSAPTSTLSSSVSGPPGGPYLVNRSVNSAPFVNPALKTVMNRPGFIPPTSRELTTNVKAATLLAPIQGPEHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHNYMRKEGLRDPA-------GPTAINAGRVTKPSGS----------TALEPVSR----------RKRKGVEEDEDLGEEEDGPWAPAKEEPVITQLEAGTLTEEQKRHRAELAERKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612

The following BLAST results are available for this feature:

BLAST of NO01G05170.1 vs.

BLAST of NO01G05170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29450.1	9.600e-299	79.07	pre-mrna-processing factor 17 [Nannochloropsis gad...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G05170	NO01G05170	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05170.1	NO01G05170.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05170.1.cds1	NO01G05170.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1372681..1374609-
coding sequence from alignment at chr1:1372681..1374609-

mRNA sequence

>NO01G05170.1 ID=NO01G05170.1|Name=NO01G05170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1929bp
ATGGACTCAATATTTAACGCCTACGGGAGTGATAGCGACTCAGAGAGCAT
CTCACCCGCATCCTCCACGTCCACCGCCGCCTCCTCAGCTGCTGCCCCTG
CAACCGCTAGTGCTGCCAGCGCCCAGCCCGTGCACCTTGTCCGCCGTACC
GTCAACTCGGCCCCCTTCGTGAATCCCGCTCTCAAGACCGTTTTGCACCG
GCCTGGCTTCATCCCACCTACCACGCGGGAGCTCACAACCAACGTCAAAG
CGGCCACGCTGTTGGCTCCTATCCAAGGCCCACAGCACCCTCACAGGCGT
GACATGGACGTGATGGGCGGTACCAAGCTGGCCACGGGCGGCTACAAGGA
AGAAGCAGTGATGGAAAAATGGAATTTTCACGAACAATTCCACACGTTTC
ACGCGCAGGGCTATGCGAGGGATGATGTGGGCGGGGGAGTGATTGGAAAT
GTGGCGAATTATGTGAAGAGAGAGGGGCTGAAGAAGCCGGCTCCTGTGGG
GCTGAAGAAGCCGGCTCCTGTGGCGGCCTCGGCCGGAGGGGCCCTGACAA
GAGCAGGCGGAGGAAGAGGGAAACGAGAAGAAGAGAAAATGACGGCACAG
CAACAACAGGAGCGACAGCAACAAATACAGCAACAGCGGCGGAAGCGGAA
GATGGAGGCAGGGGAGGAGGAGGAGGAGTTGGGGGAGGAGGATGACGGGC
CATGGGCGCCCGTGAAGGGCGGCCCAGTCCTGACAGAGCTGGAGGCAGGA
ACGCTAACGGAAGAACAAAAGCGACACCGGAAGGAGCTGGCGGAGCGGAA
GGCGCTTAAGCACAGGGGGTACGACGAGGAGGAGGATCACGATCGACGGG
ACGAACGGAAGGTGGCTCATTTATTGCCGCCGCGGCATGACCGAGATACG
GTCGCGTCTGAGCCCAGCACGCAATTCCATGGCAAGGGCCAGAAAGACTA
TCAGGGCCGGTCATGGGTGGAGCCACCGGCGGGGCTGCGGGAGGTGGAGA
CGGACCACCCTTGTTATTTGCCCAAGCGGTGTACGCACAGGTATGCGGGG
CATGAGAAGGGGGTGCAAGCTATTGAGTTCTCCCCTGGCACCGGCCACTT
GCTTTTATCCGGATCGCTGGATGGGACATGTAAGATGTGGTCTGTGTATG
GCGAGCGGCAGCTGCGGAGGACGTACTCGGGGCATGGAGCAGCGGTGCGA
TGTATTAATTTCAATGCAGATGGCACGCGCTTCTTGAGCGGGGGCTTCGA
TCGGTTTTTGCGGTTGTGGGACACGGAGACGGGGCAGTGCATCTCGACGG
TGACCAACCGGAAAGTGCCGTATGCAGCAAAGTTCTACCCGCCCAACGAT
AAGTTGTTTGTTTTTGCGGCGTCGGATAACAGGCTTTACACGTTTGATTG
GACGTCGGGGGAGATGGTGCAGGAATATAACCACCACTTGTCAGCCGTGA
ACACCGTCACTTTCTACGACAATAACACGAAGTTTGCCTCCACTTCGGAT
GATAAGAAGATGCTGTTGTGGGAGTGGGATATTCCGGTACCGATCAAGTA
CATCGCTGAGCCCGGTATGCACTCAATGCCTGCCGTCACCCCCTCCCCAG
ATGGAGGCTTTGTCGCCTGTCAGTCTCTAGATAACACCATTAAGATCTTT
TCTTGCCGCGATCGCTTCAAGCTTTTGCACAAGAAGGTGTTCAAGGGGCA
TACTATCGCAGGTTTTGCGTGTCAGCCGGCATTTTCACCGAACAATCGGT
ACCTGGCTTCAGGGGATGGGGAAGGGAAGTTGCATTTTTGGGACTTTAAG
AACACGCGGTCTTTGGCAAAGTATCGGGCGCATGACAACGGCCCTTGCAT
TGGCTTGACCTGGCACCCTGTGGAATCATCCATGGTCGCATCATGTGGTT
GGGACGGATTGATCAAGCTTTGGGAGTAG

protein sequence of NO01G05170.1

>NO01G05170.1-protein ID=NO01G05170.1-protein|Name=NO01G05170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=643bp
MDSIFNAYGSDSDSESISPASSTSTAASSAAAPATASAASAQPVHLVRRT
VNSAPFVNPALKTVLHRPGFIPPTTRELTTNVKAATLLAPIQGPQHPHRR
DMDVMGGTKLATGGYKEEAVMEKWNFHEQFHTFHAQGYARDDVGGGVIGN
VANYVKREGLKKPAPVGLKKPAPVAASAGGALTRAGGGRGKREEEKMTAQ
QQQERQQQIQQQRRKRKMEAGEEEEELGEEDDGPWAPVKGGPVLTELEAG
TLTEEQKRHRKELAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDT
VASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAG
HEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVR
CINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPND
KLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSD
DKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIF
SCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFK
NTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE*

mRNA from alignment at chr1:1372681..1374609-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G05170.1 ID=NO01G05170.1|Name=NO01G05170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1929bp|location=Sequence derived from alignment at chr1:1372681..1374609- (Nannochloropsis oceanica)
ATGGACTCAATATTTAACGCCTACGGGAGTGATAGCGACTCAGAGAGCAT
CTCACCCGCATCCTCCACGTCCACCGCCGCCTCCTCAGCTGCTGCCCCTG
CAACCGCTAGTGCTGCCAGCGCCCAGCCCGTGCACCTTGTCCGCCGTACC
GTCAACTCGGCCCCCTTCGTGAATCCCGCTCTCAAGACCGTTTTGCACCG
GCCTGGCTTCATCCCACCTACCACGCGGGAGCTCACAACCAACGTCAAAG
CGGCCACGCTGTTGGCTCCTATCCAAGGCCCACAGCACCCTCACAGGCGT
GACATGGACGTGATGGGCGGTACCAAGCTGGCCACGGGCGGCTACAAGGA
AGAAGCAGTGATGGAAAAATGGAATTTTCACGAACAATTCCACACGTTTC
ACGCGCAGGGCTATGCGAGGGATGATGTGGGCGGGGGAGTGATTGGAAAT
GTGGCGAATTATGTGAAGAGAGAGGGGCTGAAGAAGCCGGCTCCTGTGGG
GCTGAAGAAGCCGGCTCCTGTGGCGGCCTCGGCCGGAGGGGCCCTGACAA
GAGCAGGCGGAGGAAGAGGGAAACGAGAAGAAGAGAAAATGACGGCACAG
CAACAACAGGAGCGACAGCAACAAATACAGCAACAGCGGCGGAAGCGGAA
GATGGAGGCAGGGGAGGAGGAGGAGGAGTTGGGGGAGGAGGATGACGGGC
CATGGGCGCCCGTGAAGGGCGGCCCAGTCCTGACAGAGCTGGAGGCAGGA
ACGCTAACGGAAGAACAAAAGCGACACCGGAAGGAGCTGGCGGAGCGGAA
GGCGCTTAAGCACAGGGGGTACGACGAGGAGGAGGATCACGATCGACGGG
ACGAACGGAAGGTGGCTCATTTATTGCCGCCGCGGCATGACCGAGATACG
GTCGCGTCTGAGCCCAGCACGCAATTCCATGGCAAGGGCCAGAAAGACTA
TCAGGGCCGGTCATGGGTGGAGCCACCGGCGGGGCTGCGGGAGGTGGAGA
CGGACCACCCTTGTTATTTGCCCAAGCGGTGTACGCACAGGTATGCGGGG
CATGAGAAGGGGGTGCAAGCTATTGAGTTCTCCCCTGGCACCGGCCACTT
GCTTTTATCCGGATCGCTGGATGGGACATGTAAGATGTGGTCTGTGTATG
GCGAGCGGCAGCTGCGGAGGACGTACTCGGGGCATGGAGCAGCGGTGCGA
TGTATTAATTTCAATGCAGATGGCACGCGCTTCTTGAGCGGGGGCTTCGA
TCGGTTTTTGCGGTTGTGGGACACGGAGACGGGGCAGTGCATCTCGACGG
TGACCAACCGGAAAGTGCCGTATGCAGCAAAGTTCTACCCGCCCAACGAT
AAGTTGTTTGTTTTTGCGGCGTCGGATAACAGGCTTTACACGTTTGATTG
GACGTCGGGGGAGATGGTGCAGGAATATAACCACCACTTGTCAGCCGTGA
ACACCGTCACTTTCTACGACAATAACACGAAGTTTGCCTCCACTTCGGAT
GATAAGAAGATGCTGTTGTGGGAGTGGGATATTCCGGTACCGATCAAGTA
CATCGCTGAGCCCGGTATGCACTCAATGCCTGCCGTCACCCCCTCCCCAG
ATGGAGGCTTTGTCGCCTGTCAGTCTCTAGATAACACCATTAAGATCTTT
TCTTGCCGCGATCGCTTCAAGCTTTTGCACAAGAAGGTGTTCAAGGGGCA
TACTATCGCAGGTTTTGCGTGTCAGCCGGCATTTTCACCGAACAATCGGT
ACCTGGCTTCAGGGGATGGGGAAGGGAAGTTGCATTTTTGGGACTTTAAG
AACACGCGGTCTTTGGCAAAGTATCGGGCGCATGACAACGGCCCTTGCAT
TGGCTTGACCTGGCACCCTGTGGAATCATCCATGGTCGCATCATGTGGTT
GGGACGGATTGATCAAGCTTTGGGAGTAG

Coding sequence (CDS) from alignment at chr1:1372681..1374609-

>NO01G05170.1 ID=NO01G05170.1|Name=NO01G05170.1|organism=Nannochloropsis oceanica|type=CDS|length=1929bp|location=Sequence derived from alignment at chr1:1372681..1374609- (Nannochloropsis oceanica)
ATGGACTCAATATTTAACGCCTACGGGAGTGATAGCGACTCAGAGAGCAT
CTCACCCGCATCCTCCACGTCCACCGCCGCCTCCTCAGCTGCTGCCCCTG
CAACCGCTAGTGCTGCCAGCGCCCAGCCCGTGCACCTTGTCCGCCGTACC
GTCAACTCGGCCCCCTTCGTGAATCCCGCTCTCAAGACCGTTTTGCACCG
GCCTGGCTTCATCCCACCTACCACGCGGGAGCTCACAACCAACGTCAAAG
CGGCCACGCTGTTGGCTCCTATCCAAGGCCCACAGCACCCTCACAGGCGT
GACATGGACGTGATGGGCGGTACCAAGCTGGCCACGGGCGGCTACAAGGA
AGAAGCAGTGATGGAAAAATGGAATTTTCACGAACAATTCCACACGTTTC
ACGCGCAGGGCTATGCGAGGGATGATGTGGGCGGGGGAGTGATTGGAAAT
GTGGCGAATTATGTGAAGAGAGAGGGGCTGAAGAAGCCGGCTCCTGTGGG
GCTGAAGAAGCCGGCTCCTGTGGCGGCCTCGGCCGGAGGGGCCCTGACAA
GAGCAGGCGGAGGAAGAGGGAAACGAGAAGAAGAGAAAATGACGGCACAG
CAACAACAGGAGCGACAGCAACAAATACAGCAACAGCGGCGGAAGCGGAA
GATGGAGGCAGGGGAGGAGGAGGAGGAGTTGGGGGAGGAGGATGACGGGC
CATGGGCGCCCGTGAAGGGCGGCCCAGTCCTGACAGAGCTGGAGGCAGGA
ACGCTAACGGAAGAACAAAAGCGACACCGGAAGGAGCTGGCGGAGCGGAA
GGCGCTTAAGCACAGGGGGTACGACGAGGAGGAGGATCACGATCGACGGG
ACGAACGGAAGGTGGCTCATTTATTGCCGCCGCGGCATGACCGAGATACG
GTCGCGTCTGAGCCCAGCACGCAATTCCATGGCAAGGGCCAGAAAGACTA
TCAGGGCCGGTCATGGGTGGAGCCACCGGCGGGGCTGCGGGAGGTGGAGA
CGGACCACCCTTGTTATTTGCCCAAGCGGTGTACGCACAGGTATGCGGGG
CATGAGAAGGGGGTGCAAGCTATTGAGTTCTCCCCTGGCACCGGCCACTT
GCTTTTATCCGGATCGCTGGATGGGACATGTAAGATGTGGTCTGTGTATG
GCGAGCGGCAGCTGCGGAGGACGTACTCGGGGCATGGAGCAGCGGTGCGA
TGTATTAATTTCAATGCAGATGGCACGCGCTTCTTGAGCGGGGGCTTCGA
TCGGTTTTTGCGGTTGTGGGACACGGAGACGGGGCAGTGCATCTCGACGG
TGACCAACCGGAAAGTGCCGTATGCAGCAAAGTTCTACCCGCCCAACGAT
AAGTTGTTTGTTTTTGCGGCGTCGGATAACAGGCTTTACACGTTTGATTG
GACGTCGGGGGAGATGGTGCAGGAATATAACCACCACTTGTCAGCCGTGA
ACACCGTCACTTTCTACGACAATAACACGAAGTTTGCCTCCACTTCGGAT
GATAAGAAGATGCTGTTGTGGGAGTGGGATATTCCGGTACCGATCAAGTA
CATCGCTGAGCCCGGTATGCACTCAATGCCTGCCGTCACCCCCTCCCCAG
ATGGAGGCTTTGTCGCCTGTCAGTCTCTAGATAACACCATTAAGATCTTT
TCTTGCCGCGATCGCTTCAAGCTTTTGCACAAGAAGGTGTTCAAGGGGCA
TACTATCGCAGGTTTTGCGTGTCAGCCGGCATTTTCACCGAACAATCGGT
ACCTGGCTTCAGGGGATGGGGAAGGGAAGTTGCATTTTTGGGACTTTAAG
AACACGCGGTCTTTGGCAAAGTATCGGGCGCATGACAACGGCCCTTGCAT
TGGCTTGACCTGGCACCCTGTGGAATCATCCATGGTCGCATCATGTGGTT
GGGACGGATTGATCAAGCTTTGGGAGTAG

Synonyms

Publications