NO01G05170, NO01G05170 (gene) Nannochloropsis oceanica

Overview
NameNO01G05170
Unique NameNO01G05170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1929
Alignment locationchr1:1372681..1374609 -

Link to JBrowse

Properties
Property NameValue
DescriptionPre-mrna-processing factor 17
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1372681..1374609 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0071013catalytic step 2 spliceosome
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR032847PRPF17
IPR001680WD40_repeat
Homology
BLAST of NO01G05170 vs. NCBI_GenBank
Match: EWM29450.1 (pre-mrna-processing factor 17 [Nannochloropsis gaditana])

HSP 1 Score: 991.5 bits (2562), Expect = 1.200e-285
Identity = 471/598 (78.76%), Postives = 500/598 (83.61%), Query Frame = 0
Query:   45 HLVRRTVNSAPFVNPALKTVLHRPGFIPPTTRELTTNVKAATLLAPIQGPQHPHRRDMDVMGGTKLATGGYKEEAVMEKWNFHEQFHTFHAQGYARDDVGGGVIGNVANYVKREGLKKPAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPWAPVKGGPVLTELEAGTLTEEQKRHRKELAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            +LV R+VNSAPFVNPALKTV++RPGFIPPT+RELTTNVKAATLLAPIQGP+HP RR+MD MGGTKLATGGYKE+AVMEKWNFHEQFHTFHAQGYARDDV GG+IGNV NY+++EGL+ PA                                                                    GPWAP K  PV+T+LEAGTLTEEQKRHR ELAERKA KHRGYDE+ED DRRDERKVAHLLPPRHDRDTVASEP+TQFHGKG+ DYQGRSWVEPP GLR VETDH CYLPKRC HRY GH KGVQAIEF PGTGHLLLS SLDGTCK+WSVY ERQLRRTYSGH AAVRCINF+ DG+RFLSGGFDRFLRLWDTETGQCIST+TNRKVPYAAKFYPPND LF+FAASDNRLYT+DW+SGEMVQEYNHHLSAVNTVTFYDNN++FASTSDDKKMLLWEWDI VPIKYIAEPGMHSMPAVTPSP G FVACQSLDNTIKIF CRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTR+LAKYRAHDNGPCIGL WHPVE+SMVASCGWDGLIKLWE
Sbjct:   42 YLVNRSVNSAPFVNPALKTVMNRPGFIPPTSRELTTNVKAATLLAPIQGPEHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHNYMRKEGLRDPA---------------------------GPTAINAGRVTKPSGSTALEPVSRRKRKGVEEDEDLGEEEDGPWAPAKEEPVITQLEAGTLTEEQKRHRAELAERKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIKLWE 612          
BLAST of NO01G05170 vs. NCBI_GenBank
Match: XP_005855598.1 (pre-mRNA-processing factor 17 [Nannochloropsis gaditana CCMP526] >EKU20761.1 pre-mRNA-processing factor 17 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 980.3 bits (2533), Expect = 2.800e-282
Identity = 467/595 (78.49%), Postives = 496/595 (83.36%), Query Frame = 0
Query:   45 HLVRRTVNSAPFVNPALKTVLHRPGFIPPTTRELTTNVKAATLLAPIQGPQHPHRRDMDVMGGTKLATGGYKEEAVMEKWNFHEQFHTFHAQGYARDDVGGGVIGNVANYVKREGLKKPAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPWAPVKGGPVLTELEAGTLTEEQKRHRKELAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIK 640
            +LV R+VNSAPFVNPALKTV++RPGFIPPT+RELTTNVKAATLLAPIQGP+HP RR+MD MGGTKLATGGYKE+AVMEKWNFHEQFHTFHAQGYARDDV GG+IGNV NY+++E L+ PA                                                                    GPWAP K  PV+T+LEAGTLTEEQKRHR ELAERKA KHRGYDE+ED DRRDERKVAHLLPPRHDRDTVASEP+TQFHGKG+ DYQGRSWVEPP GLR VETDH CYLPKRC HRY GH KGVQAIEF PGTGHLLLS SLDGTCK+WSVY ERQLRRTYSGH AAVRCINF+ DG+RFLSGGFDRFLRLWDTETGQCIST+TNRKVPYAAKFYPPND LF+FAASDNRLYT+DW+SGEMVQEYNHHLSAVNTVTFYDNN++FASTSDDKKMLLWEWDI VPIKYIAEPGMHSMPAVTPSP G FVACQSLDNTIKIF CRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTR+LAKYRAHDNGPCIGL WHPVE+SMVASCGWDGLIK
Sbjct:   42 YLVNRSVNSAPFVNPALKTVMNRPGFIPPTSRELTTNVKAATLLAPIQGPEHPFRREMDSMGGTKLATGGYKEDAVMEKWNFHEQFHTFHAQGYARDDVAGGIIGNVHNYMRKECLRDPA---------------------------GPTAINAGRVTKPSGSTALEPVSRRKRKGVEEDEDLGEEEDGPWAPAKEEPVITQLEAGTLTEEQKRHRAELAERKAAKHRGYDEDEDLDRRDERKVAHLLPPRHDRDTVASEPTTQFHGKGESDYQGRSWVEPPGGLRPVETDHACYLPKRCVHRYTGHGKGVQAIEFFPGTGHLLLSASLDGTCKVWSVYDERQLRRTYSGHTAAVRCINFSPDGSRFLSGGFDRFLRLWDTETGQCISTITNRKVPYAAKFYPPNDNLFIFAASDNRLYTYDWSSGEMVQEYNHHLSAVNTVTFYDNNSRFASTSDDKKMLLWEWDISVPIKYIAEPGMHSMPAVTPSPAGDFVACQSLDNTIKIFGCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRALAKYRAHDNGPCIGLVWHPVEASMVASCGWDGLIK 609          
BLAST of NO01G05170 vs. NCBI_GenBank
Match: CBJ32980.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 585.1 bits (1507), Expect = 2.600e-163
Identity = 311/568 (54.75%), Postives = 385/568 (67.78%), Query Frame = 0
Query:   81 NVKAATLLAPIQGPQHPHRRDMDV-MGGTKLATGGYKEEAVMEKWNFHEQFHTFHAQGYARDDVGGGVIGNVANYVKREGLKKPAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPWAPVKGGPVLTELEAGTLTEEQKRHRKELAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETD----HPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSG-EMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            N KA   LAP+QGP HPHRRD+ V  GG    TGG  E+A +E+W+FHEQ+HTFH  GYA D   G  +GN++ + KR+G                                       XXXXXXXXXXXXXXXXXXXXXX            G WAP +     T+ EAGT+T EQ + R+     +A KHR Y+ EEDHDRRDERK++HLLPPRH+RDT +    + FHGK Q DYQGRSW+ PPAG R VE +    H C+ PK+C HRY GH KGVQAI F PG GHLLLS S+DG+ K+W V G R  RRTY GH AAVR I F+ DG +FLS G+DRF+R WDTETGQCI+T TNRK+PY AK+YP ++ +F+   SDNR+  +D  +G E+VQEYNHHL  VNTV F D+N +F STSDDKK+L+WE++IPVPIKYIAEP MHSMPA T  P GGF   QSLDN I  ++ RD+F+ + KK FKGH  AG+AC+ AFSPN ++LASGDG+GK++ WD+ +T+   K + HD+GPCI + WHP+E S VA+ GWDG+IKLW+
Sbjct:   83 NPKAEHFLAPVQGPAHPHRRDLPVPAGGRATGTGGVIEQASLEEWSFHEQYHTFHQFGYAVDS-RGDTVGNLSEHSKRQG------------------------DTVLSAEVGGLRRNKXXXXXXXXXXXXXXXXXXXXXXERGGDLGDSDNDGVWAP-EVPREKTDFEAGTMTAEQTKFREAWEAEQAKKHREYNMEEDHDRRDERKISHLLPPRHNRDTESKTARSTFHGKAQHDYQGRSWMAPPAGARSVEDEGEDVHKCFTPKKCIHRYTGHTKGVQAISFFPGYGHLLLSASMDGSVKIWDVNGGRGQRRTYQGHSAAVRDIQFSNDGKQFLSAGYDRFIRQWDTETGQCIATFTNRKMPYCAKYYPVDNNMFLCGCSDNRVVQYDARNGSEIVQEYNHHLGPVNTVLFVDDNQRFVSTSDDKKVLIWEYNIPVPIKYIAEPDMHSMPATTLHPTGGFFVGQSLDNKIVTWTARDKFRQMKKKEFKGHVNAGYACRMAFSPNGKFLASGDGQGKMYIWDWGSTKVYRKLQCHDDGPCIDVAWHPLEPSWVATAGWDGVIKLWD 624          
BLAST of NO01G05170 vs. NCBI_GenBank
Match: GAY06536.1 (putative pre-mRNA splicing factor [Pythium insidiosum])

HSP 1 Score: 521.5 bits (1342), Expect = 3.600e-144
Identity = 278/611 (45.50%), Postives = 362/611 (59.25%), Query Frame = 0
Query:   51 VNSAPFVNPA--LKTVLHRPGFIPPT--TRELTTNVKAATLLAPIQGPQHPHRR----DMDVMGGTKLATGGYKEEAVMEKWNFHEQFHTFHAQ--GYARDDVGGGVIGN---VANYVKREGLKKPAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPWAPVKGGPVLTELEAGTLTEEQKRHRKELAERKALK-----HRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLR-EVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            VNSAP V       T LH+      T  +++LT N+   + LAP  GP++ + R    +  ++G  K    G  E   M+ ++F  Q+HT++ Q  G + +       G+       + ++  ++PA                                                                    G WAP K   VLT+ EAGTL+EEQ R R+E  E K  K     +  +DE+ D DR  E+K AHLLP R      A E  T+F    + DYQGR+WVEPP  L+ + + +H  YLPKRC H++AGH KGVQAIE  P  GHLLLSGSLD T ++W VY ER+ +R Y GH  AVR +NF+ DG +FL+ GFDRF++LWDTETGQ I + TNR+VPY  +++P ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FKL  KKVFKGH+ AG+ACQ  FSPN +YL SGDGEGKL FWD+K+T+   K RAHD GPC+G+ WHP+E S V +CGWDGLIKLW+
Sbjct:   39 VNSAPLVTTVDPYTTALHQQLAAASTSSSQQLTVNLPVDSTLAPHYGPENAYARASASNPALVGSGKEIVTGVVERTDMDGFSFDSQYHTYNQQHSGLSLNKAPMSTDGDSVFTQRTIAKKSKRRPA-----------------------------------------------------QPKTFAEEFGSHDTDGIWAPYKEKGVLTDAEAGTLSEEQARIRQERLEAKKRKAEERSNTEFDEDMDFDRMVEKKTAHLLPARLKPGQKAMEARTEFLDTQEYDYQGRAWVEPPRTLKPDEDAEHAVYLPKRCIHKWAGHTKGVQAIELFPKYGHLLLSGSLDNTVRIWDVYNERKCKRLYEGHSGAVRGLNFSNDGRQFLTCGFDRFIQLWDTETGQAIKSFTNRRVPYCIRYHPEDNTNFVIGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNRRFVSTSDDKKILIWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKLCRKKVFKGHSSAGYACQIGFSPNGQYLTSGDGEGKLCFWDWKSTKMYKKLRAHDRGPCMGVAWHPIEPSQVVTCGWDGLIKLWD 596          
BLAST of NO01G05170 vs. NCBI_GenBank
Match: XP_024586158.1 (mRNA splicing factor [Plasmopara halstedii] >CEG49789.1 mRNA splicing factor [Plasmopara halstedii])

HSP 1 Score: 500.0 bits (1286), Expect = 1.100e-137
Identity = 271/606 (44.72%), Postives = 344/606 (56.77%), Query Frame = 0
Query:   51 VNSAPFV------NPALKTVLHRPGFIPPTTRELTTNVKAATLLAPIQGPQHPHRRDMDVMGGTKLATG-----GYKEEAVMEKWNFHEQFHTFHAQGYARDDVGGGVIGNVANYVKREGLKKPAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPWAPVK-GGPVLTELEAGTLTEEQK--RHRKELAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            VNSAPFV          KT       I  +  +LT N+   T LAP  GP   +  ++ +M   ++ +G     G  E A ME + F  Q+HT H Q           I    +  + +G   P P                                                                   G WAP K  G  LT+ E GT+ E+QK  +   E+  RK       DEE D DR  E+K++HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPK+C H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER+ +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S++ +  FD  SGE+VQEYNHHL AVN+VTF D+NT+F S+SDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P G F A QSL+N I +++ RD+FKL  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K+T+ L K RAHD GP +G  WHP+ESS V +CGWDGLIK W+
Sbjct:   31 VNSAPFVAITDSEEQRNKTAF----MIAASQTQLTVNLPIDTTLAPFVGPHGGNSTNLALMNPLRVGSGKEIVTGVVEHAEMEDYTFEAQYHT-HNQ----------TISQNPSRHRVKGAPPPPPT-------------------LPGEIIPDTIVASGEEDVFTRRNAKRKNQTSLKARALAENVGDENVTGVWAPYKEKGIFLTDAEKGTMNEQQKMLQEEHEVKRRKTEGKTEMDEEMDFDRMVEKKLSHLLPARLKAGQTALEGKSTFLGDNEYDYQGRAWVEPPRTLKPDDGDHQVFLPKKCIHKWMGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERKCQRIYEGHSGAVRGINFSTDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPVDNTQFVVGDSNHMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNTRFVSSSDDKKVLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGAFFAGQSLNNQIDVYTARDKFKLNRKKVFRGHQNAGYACQIGFSPNGQYIMSGDGEGKLVFWDWKSTKQLKKLRAHDRGPTMGAIWHPLESSKVVTCGWDGLIKYWD 602          
BLAST of NO01G05170 vs. NCBI_GenBank
Match: GAY05947.1 (putative pre-mRNA splicing factor [Pythium insidiosum])

HSP 1 Score: 498.0 bits (1281), Expect = 4.200e-137
Identity = 271/611 (44.35%), Postives = 354/611 (57.94%), Query Frame = 0
Query:   51 VNSAPFVNPA--LKTVLHRPGFIPPT--TRELTTNVKAATLLAPIQGPQHPHRR----DMDVMGGTKLATGGYKEEAVMEKWNFHEQFHTFHAQ--GYARDDVGGGVIGN---VANYVKREGLKKPAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPWAPVKGGPVLTELEAGTLTEEQKRHRKELAERKALK-----HRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLR-EVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            VNSAP V       T LH+      T  +++LT N+   + LAP  GP++ + R    +  ++G  K    G  E   M+ ++F  Q+HT++ Q  G + +       G+       + ++  ++PA                                                                    G WAP K   VLT+ EAGTL+EEQ R R+E  E K  K     +  +DE+ D DR  E+K AHLLP R      A E  T+F    + DYQGR+WVEPP  L+ + + +H  YLPKRC H++AGH KGVQAIE  P  GHLLLSGSLD T ++W VY ER+ +R Y GH  AVR +NF+ DG +FL+ GFDRF++LWDTETGQ I + TNR+VPY  +++P ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FKL  KKVFKGH+ AG+ACQ  FSPN        G  KL FWD+K+T+   K RAHD GPC+G+ WHP+E S V +CGWDGLIKLW+
Sbjct:   39 VNSAPLVTTVDPYMTALHQQLAAASTSSSQQLTVNLPVDSTLAPHYGPENAYARASASNPALVGSGKEIVTGVVERTDMDGFSFDSQYHTYNQQHSGLSLNKAPMSTDGDSVFTQRTIAKKSKRRPA-----------------------------------------------------QPKTFAEEFGSHDTDGIWAPYKEKGVLTDAEAGTLSEEQARIRQERLEAKKRKAEERSNTEFDEDMDFDRMVEKKTAHLLPARLKPGQKAMEARTEFLDTQEYDYQGRAWVEPPRTLKPDEDAEHAVYLPKRCIHKWAGHTKGVQAIELFPKYGHLLLSGSLDNTVRIWDVYNERKCKRLYEGHSGAVRGLNFSNDGRQFLTCGFDRFIQLWDTETGQAIKSFTNRRVPYCIRYHPEDNTNFVIGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNRRFVSTSDDKKILIWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKLCRKKVFKGHSSAGYACQIGFSPN--------GRRKLCFWDWKSTKMYKKLRAHDRGPCMGVAWHPIEPSQVVTCGWDGLIKLWD 588          
BLAST of NO01G05170 vs. NCBI_GenBank
Match: XP_002898868.1 (pre-mRNA-processing factor, putative [Phytophthora infestans T30-4] >EEY62626.1 pre-mRNA-processing factor, putative [Phytophthora infestans T30-4])

HSP 1 Score: 497.7 bits (1280), Expect = 5.500e-137
Identity = 269/607 (44.32%), Postives = 340/607 (56.01%), Query Frame = 0
Query:   51 VNSAPFV------NPALKTVLHRPGFIPPTTRELTTNVKAATLLAPIQGPQHPHRRDMDVM-----GGTKLATGGYKEEAVMEKWNFHEQFHTFHAQGYARDDVGGGVIGNVANYVKREGLKKPAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPWAPVKG-GPVLTELEAGTLTEEQKRHRKELAE---RKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            VNSAPFV      + A KT     G    + R L  N+   + LAP  GPQ     ++ +M     G  K    G  E+A ME ++F  Q+HTF+                ++  + R  +K   P                                                                   G WAP K      T+ E   + E+QK  R+E  E   RKA      DEE D DR  ERK +HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER+ +R Y GH AAVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EPGMH+MPAVT  P GGF A QSL+N I +++ RD+FK+  KK F+GH  AG+ACQ  FSPN +++ SGDG+GKL FWD+K ++ L K  AHD GP +G  WHP+E S V SCGWDGLIK W+
Sbjct:   46 VNSAPFVAHSDSQDQANKTAFLSAG----SQRRLAVNLPVESTLAPFMGPQSGDSTELALMDPLRAGSGKEVVTGVVEQADMEDYSFEAQYHTFNE--------------TLSRNIPRNRVKGAPP---------------SAPALPGEIIPDNIVAPDEEDVFTRRNAKKRKNQIISKERAAAEDFGDENSDGIWAPYKDKNKHFTDAELDIMNEQQKALREEHQEAKRRKAEAKSEVDEEMDFDRMVERKTSHLLPARLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKFGHLLLSGSMDNTVRIWDVYNERKCQRVYEGHSAAVRGINFSNDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLKAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPGMHAMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKMNRKKTFRGHQNAGYACQIGFSPNGQFVMSGDGQGKLAFWDWKTSKMLQKLHAHDRGPTMGAIWHPLEPSKVVSCGWDGLIKYWD 619          
BLAST of NO01G05170 vs. NCBI_GenBank
Match: ETP02377.1 (hypothetical protein F441_20540 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 496.9 bits (1278), Expect = 9.500e-137
Identity = 238/414 (57.49%), Postives = 291/414 (70.29%), Query Frame = 0
Query:  233 GPWAPVKG-GPVLTELEAGTLTEEQKRHRKELAERK---ALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            G WAP K     LT+ E GT+ E+QK  R+E  E K   A K  G DEE D DR  E+K +HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER  +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S + SCGWDGLIK W+
Sbjct:  194 GIWAPYKDKSKHLTDAEQGTMNEQQKALREEHQEAKXXXAAKEEG-DEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 606          
BLAST of NO01G05170 vs. NCBI_GenBank
Match: ETL79573.1 (hypothetical protein L917_19821 [Phytophthora parasitica])

HSP 1 Score: 491.1 bits (1263), Expect = 5.200e-135
Identity = 235/415 (56.63%), Postives = 289/415 (69.64%), Query Frame = 0
Query:  233 GPWAPVKG-GPVLTELEAGTLTEEQKRHRKE----LAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            G WAP K     LT+ E GT+ E+QK  R+E           K  G DEE D DR  E+K +HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER+ +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S + SCGWDGLIK W+
Sbjct:  194 GIWAPYKDKSKHLTDAEQGTMNEQQKALREEHXXXXXXXXXXKEEG-DEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQKYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTLRIWDVYNERKCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607          
BLAST of NO01G05170 vs. NCBI_GenBank
Match: ETI32540.1 (hypothetical protein F443_20670 [Phytophthora parasitica P1569])

HSP 1 Score: 490.7 bits (1262), Expect = 6.800e-135
Identity = 235/415 (56.63%), Postives = 288/415 (69.40%), Query Frame = 0
Query:  233 GPWAPVKG-GPVLTELEAGTLTEEQKRHRKE----LAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE 643
            G WAP K     LT+ E GT+ E+QK  R+E           K  G DEE D DR  E+K +HLLP R      A E  + F G  + DYQGR+WVEPP  L+  + DH  +LPKRC H++ GH KGVQAIE  P  GHLLLSGS+D T ++W VY ER  +R Y GH  AVR INF+ DG +FLS  FDRF++LWDTETGQ + + T R+VPY  KFYP ++  FV   S+N +  FD  SGE+VQEYNHHL AVN+VTF D+N +F STSDDKK+L+WEW IPVPIKYI+EP MHSMPAVT  P GGF A QSL+N I +++ RD+FK+  KKVF+GH  AG+ACQ  FSPN +Y+ SGDGEGKL FWD+K T+ + K RAHD GP +G  WHP+E S + SCGWDGLIK W+
Sbjct:  194 GIWAPYKDKSKHLTDAEQGTMNEQQKALREEHXXXXXXXXXXKEEG-DEEMDFDRMVEKKTSHLLPSRLKAGQTALEGKSTFLGDQEYDYQGRAWVEPPRSLKPDDGDHQVFLPKRCVHKWTGHTKGVQAIELFPKYGHLLLSGSMDNTVRIWDVYNERTCQRVYEGHSGAVRGINFSRDGKQFLSCSFDRFIQLWDTETGQAVHSFTTRRVPYCVKFYPLDNTQFVVGDSNNMVVQFDTRSGEIVQEYNHHLQAVNSVTFVDDNKRFVSTSDDKKLLVWEWGIPVPIKYISEPSMHSMPAVTLHPSGGFFAGQSLNNQIDVYTARDKFKINRKKVFRGHQNAGYACQIGFSPNGQYVMSGDGEGKLVFWDWKTTKMVKKLRAHDRGPTMGAIWHPLEPSKIVSCGWDGLIKYWD 607          
The following BLAST results are available for this feature:
BLAST of NO01G05170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29450.11.200e-28578.76pre-mrna-processing factor 17 [Nannochloropsis gad... [more]
XP_005855598.12.800e-28278.49pre-mRNA-processing factor 17 [Nannochloropsis gad... [more]
CBJ32980.12.600e-16354.75conserved unknown protein [Ectocarpus siliculosus][more]
GAY06536.13.600e-14445.50putative pre-mRNA splicing factor [Pythium insidio... [more]
XP_024586158.11.100e-13744.72mRNA splicing factor [Plasmopara halstedii] >CEG49... [more]
GAY05947.14.200e-13744.35putative pre-mRNA splicing factor [Pythium insidio... [more]
XP_002898868.15.500e-13744.32pre-mRNA-processing factor, putative [Phytophthora... [more]
ETP02377.19.500e-13757.49hypothetical protein F441_20540 [Phytophthora para... [more]
ETL79573.15.200e-13556.63hypothetical protein L917_19821 [Phytophthora para... [more]
ETI32540.16.800e-13556.63hypothetical protein F443_20670 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007741NSK007741Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05170.1NO01G05170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577659gene_548Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100083g16gene1176Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05170.1NO01G05170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05170 ID=NO01G05170|Name=NO01G05170|organism=Nannochloropsis oceanica|type=gene|length=1929bp
ATGGACTCAATATTTAACGCCTACGGGAGTGATAGCGACTCAGAGAGCAT
CTCACCCGCATCCTCCACGTCCACCGCCGCCTCCTCAGCTGCTGCCCCTG
CAACCGCTAGTGCTGCCAGCGCCCAGCCCGTGCACCTTGTCCGCCGTACC
GTCAACTCGGCCCCCTTCGTGAATCCCGCTCTCAAGACCGTTTTGCACCG
GCCTGGCTTCATCCCACCTACCACGCGGGAGCTCACAACCAACGTCAAAG
CGGCCACGCTGTTGGCTCCTATCCAAGGCCCACAGCACCCTCACAGGCGT
GACATGGACGTGATGGGCGGTACCAAGCTGGCCACGGGCGGCTACAAGGA
AGAAGCAGTGATGGAAAAATGGAATTTTCACGAACAATTCCACACGTTTC
ACGCGCAGGGCTATGCGAGGGATGATGTGGGCGGGGGAGTGATTGGAAAT
GTGGCGAATTATGTGAAGAGAGAGGGGCTGAAGAAGCCGGCTCCTGTGGG
GCTGAAGAAGCCGGCTCCTGTGGCGGCCTCGGCCGGAGGGGCCCTGACAA
GAGCAGGCGGAGGAAGAGGGAAACGAGAAGAAGAGAAAATGACGGCACAG
CAACAACAGGAGCGACAGCAACAAATACAGCAACAGCGGCGGAAGCGGAA
GATGGAGGCAGGGGAGGAGGAGGAGGAGTTGGGGGAGGAGGATGACGGGC
CATGGGCGCCCGTGAAGGGCGGCCCAGTCCTGACAGAGCTGGAGGCAGGA
ACGCTAACGGAAGAACAAAAGCGACACCGGAAGGAGCTGGCGGAGCGGAA
GGCGCTTAAGCACAGGGGGTACGACGAGGAGGAGGATCACGATCGACGGG
ACGAACGGAAGGTGGCTCATTTATTGCCGCCGCGGCATGACCGAGATACG
GTCGCGTCTGAGCCCAGCACGCAATTCCATGGCAAGGGCCAGAAAGACTA
TCAGGGCCGGTCATGGGTGGAGCCACCGGCGGGGCTGCGGGAGGTGGAGA
CGGACCACCCTTGTTATTTGCCCAAGCGGTGTACGCACAGGTATGCGGGG
CATGAGAAGGGGGTGCAAGCTATTGAGTTCTCCCCTGGCACCGGCCACTT
GCTTTTATCCGGATCGCTGGATGGGACATGTAAGATGTGGTCTGTGTATG
GCGAGCGGCAGCTGCGGAGGACGTACTCGGGGCATGGAGCAGCGGTGCGA
TGTATTAATTTCAATGCAGATGGCACGCGCTTCTTGAGCGGGGGCTTCGA
TCGGTTTTTGCGGTTGTGGGACACGGAGACGGGGCAGTGCATCTCGACGG
TGACCAACCGGAAAGTGCCGTATGCAGCAAAGTTCTACCCGCCCAACGAT
AAGTTGTTTGTTTTTGCGGCGTCGGATAACAGGCTTTACACGTTTGATTG
GACGTCGGGGGAGATGGTGCAGGAATATAACCACCACTTGTCAGCCGTGA
ACACCGTCACTTTCTACGACAATAACACGAAGTTTGCCTCCACTTCGGAT
GATAAGAAGATGCTGTTGTGGGAGTGGGATATTCCGGTACCGATCAAGTA
CATCGCTGAGCCCGGTATGCACTCAATGCCTGCCGTCACCCCCTCCCCAG
ATGGAGGCTTTGTCGCCTGTCAGTCTCTAGATAACACCATTAAGATCTTT
TCTTGCCGCGATCGCTTCAAGCTTTTGCACAAGAAGGTGTTCAAGGGGCA
TACTATCGCAGGTTTTGCGTGTCAGCCGGCATTTTCACCGAACAATCGGT
ACCTGGCTTCAGGGGATGGGGAAGGGAAGTTGCATTTTTGGGACTTTAAG
AACACGCGGTCTTTGGCAAAGTATCGGGCGCATGACAACGGCCCTTGCAT
TGGCTTGACCTGGCACCCTGTGGAATCATCCATGGTCGCATCATGTGGTT
GGGACGGATTGATCAAGCTTTGGGAGTAG
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protein sequence of NO01G05170.1

>NO01G05170.1-protein ID=NO01G05170.1-protein|Name=NO01G05170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=643bp
MDSIFNAYGSDSDSESISPASSTSTAASSAAAPATASAASAQPVHLVRRT
VNSAPFVNPALKTVLHRPGFIPPTTRELTTNVKAATLLAPIQGPQHPHRR
DMDVMGGTKLATGGYKEEAVMEKWNFHEQFHTFHAQGYARDDVGGGVIGN
VANYVKREGLKKPAPVGLKKPAPVAASAGGALTRAGGGRGKREEEKMTAQ
QQQERQQQIQQQRRKRKMEAGEEEEELGEEDDGPWAPVKGGPVLTELEAG
TLTEEQKRHRKELAERKALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDT
VASEPSTQFHGKGQKDYQGRSWVEPPAGLREVETDHPCYLPKRCTHRYAG
HEKGVQAIEFSPGTGHLLLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVR
CINFNADGTRFLSGGFDRFLRLWDTETGQCISTVTNRKVPYAAKFYPPND
KLFVFAASDNRLYTFDWTSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSD
DKKMLLWEWDIPVPIKYIAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIF
SCRDRFKLLHKKVFKGHTIAGFACQPAFSPNNRYLASGDGEGKLHFWDFK
NTRSLAKYRAHDNGPCIGLTWHPVESSMVASCGWDGLIKLWE*
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Synonyms
Publications