NO01G04890, NO01G04890 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G04890 vs. NCBI_GenBank
Match: EWM29388.1 (Nucleolar 27S pre-rRNA processing Urb2/Npa2 domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 597.4 bits (1539), Expect = 1.400e-166 Identity = 411/1085 (37.88%), Postives = 562/1085 (51.80%), Query Frame = 0
Query: 755 LGHLGIRSKLFGLLVDNVRVSPLNALELGRRTSATMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYARLLEVQAMCSFWLDNXXXXXXXXXXXXXXXXSALEFPSGASFLQTIISHASRLSSCKGTLDKVVVGRLRQLLLER-----GLRGVSATPEGMADTEAEPLELVAFLFQGHEKDDDTTSDGHGADGGAREQYHRRLNLSLLGASLPLWASHCKTEHLDLLWSAVFFDTLTVVRSKKPNINRPSIRLLTDAAFYEITPLAYRCVPSWARLVLDCLVDM-----SGRALEAVEGYVEGGDVKSLFCATEQV--LSLPTRAVRTQGKIKHKQXXXXXXXXXXXXXXXXVFQLTAKSVGKTNELEEDRMARATHCCRLLNSMPPGYLPTEHEPLRFLLSILLSRVVTCNRAHASAQTLHLTLSASSLLALQRAPDAIVPLLATSTSLIDKWLVKLVLPARVADSTYSSSPFSESKYIGLQLLGCYVDHLVKDKG---AEAGM-----TEEQQQHCVAQLLQALMKQGLLATLEGDTATTGKDEEEDIRHALRAIRVLVAPYLGSDGLSAG-----GRETLVEVVVKQLGPAVMRRLSSSLSSEALRASAALLELIGRKGYESKENEGTNTQRMASFHLPHNAVSQVLAKATTSARGQEKRDTADGVMEFLAAYLQWAERMEEEAEEEGIILEEMVQLAVLSSXXVSLQSSADEEDQHAAFVAAAIGNARGGVNVQLQALYRLIHLLDAAKVPSSSSHPENNESETRRAAETLARAGRLFEVLVEQGGMGEGPGAEAVRQVAQTFLGRMTQLLSELFARVLSSRTIDNSDI--GAEMLAGMLRGLSVLRLYVRKRWLFLSGGGMRVEDLGRLYVAVASLPLALQGMKGEEQVDGEQVSQREEVFGVACGLLSALLKHHSRLVYQCAPPFFLLTRALLRALLSENSNGMSVGWGPTAVKAWTRLAEHLAGHATPLRRHLMLLLVDYLHVCPHLRQELKGELQPAAFALMDALSSFEVQHMHAALLDAAGQALLKKLHSDYQQRYKYRGKV 1813
LG G+RSKL GLL++N++VS NA L R + + YA LLE+ +C FW+++ S+ F + SF++ ++ H S L C+ +D +VV RL QLL+E+ G SA G + E +LVA LFQ + D T G DG A + + NL++LG SLPLWA +C EHLD W ++F D+ + R+ +RPSIRLLTDA+FYEI+PLA RC+P+W+ V + L M + L+ ++G++E G V SL ATE LS PT +T+ + + V T + + +ARA H CRLLNS+P YLP+E PLRFL S+ +S +T N L L L+ S+ ALQ +P I PL+ ST + ++W + +VL + SS P S +GL LL Y+ + G E GM + Q+ + +L+ L+K LL LE + G D++ D+ HALR I+ L+APYL +G+ A GRE ++ + +LGPA R L S SSE A L++L+G+ E +R SF LP + V QVL T T ++ +AAYLQ+ R EE+ +EG ILE MV A+ ++A E Q A F+A AI N RGG +VQ QAL+RLI + AA+ + S P +TL RA FE LVE EGP EA+R VAQ FLG + L++ L R+L S++ +E+ A + + L VLRL+VRKRWLF SG GMRVED+GR+ V++L + + G+ ++V E F C LLS LLK H RLV Q APPFFL+ RAL R L+ + ++G AVKAW RL EH+AG AT LR+HLM+LLVDYL V P+L E K LQ AFAL+DAL+S EVQHM+AALLD GQALLKKL+S+YQQ+YK+RGKV
Sbjct: 7 LGRPGVRSKLLGLLLENMQVSAANAFALKGRINGIL--------------AHLRRLVLDELREGTSGEPSPGTLRGKGRRGPRDSDAIPGPSTVRVALTLYAHLLELDLLCDFWVESSDDTSRSSSSDRDTEPSSRTFSTHGSFVKAVVKHISSLVGCRKVVDMLVVSRLYQLLVEKGGPPDGWGRESALALGEHVEDKEERDLVACLFQAQPGNGDQTI---GDDGNAGNRDGWQRNLAILGPSLPLWAWYCGKEHLDTFWHSIFSDSYSATRNLTSCHSRPSIRLLTDASFYEISPLACRCIPAWSFYVWESLASMRPGSTPKKGLQQLKGWMERGGVTSLAMATEYACFLSAPTSVGKTKRATSPVEKERN--------------PFVKEWVKYTQDDSNESLARAVHLCRLLNSLPSEYLPSEQAPLRFLFSVFISCGITRNPTSTGRHILALALATSATQALQSSPQEIFPLINNSTHIFEQWFLPVVLSRSAPSLSSSSVPSSAGDEVGLSLLKNYIASFLLRPGNVPTEGGMHVNGAKGQGQEKAMTRLVSCLLKDKLLPLLEKHPGSNGSDDDSDLAHALRLIQALLAPYLSKEGMDASMEGIDGREDILNLAASRLGPAAARHLPFSASSEVFLVLADLMKLVGQNTSEGDALTPAGARRQGSFKLPSHTVLQVLKPGKTG-----NMCTRASSLKLVAAYLQYGMR-EEDFAQEGAILEAMVDFAMHVPSASKTPATAFEARQ-AHFLATAIENTRGGSSVQGQALHRLIDCMYAAQ-EAFLSRPAGRSRAA--VTDTLRRACCFFERLVEAADSREGPAVEAIRLVAQDFLGLASSLVTVLMTRLLDREAPPASNLLSQSELDACLSKVLGVLRLFVRKRWLFPSGSGMRVEDVGRILAPVSALIPVMHRVGGKTGEQLDEVPPAEGPFAGICNLLSTLLKLHPRLVSQSAPPFFLVARALFRLLVVKKTSGNGPYGELGAVKAWVRLIEHIAGQATLLRKHLMMLLVDYLSVYPYLGVEDKEVLQTGAFALIDALNSSEVQHMNAALLDPVGQALLKKLYSEYQQQYKFRGKV 1050
BLAST of NO01G04890 vs. NCBI_GenBank
Match: XP_024391822.1 (uncharacterized protein LOC112290104 [Physcomitrella patens] >PNR42572.1 hypothetical protein PHYPA_017402 [Physcomitrella patens]) HSP 1 Score: 74.3 bits (181), Expect = 4.300e-9 Identity = 53/164 (32.32%), Postives = 82/164 (50.00%), Query Frame = 0
Query: 1666 VFGVACGLLSALLKHHSRLVYQCAPPFFLL---TRALLRALLSENS------NGMSVGWGPTAVKAW-TRLAEHLAGHATPLRRHLMLLLVDYLHVC-------PHLRQELKGELQPAAFALMDALSSFEVQHMHAALLDAAGQALLKKLHSDYQQRYKYRGKV 1813
++ C LL ALL+H R +C LL R LL+ L + + + + GP +W +R+ + + H + ++ +L DYL+V LR+E+ L+P AFAL+DA S ++Q +HAAL + A + L L DY+ YKY GKV
Sbjct: 1877 LYVACCKLLCALLRHRIR---ECGHSMALLGESCRILLQCLAAPSGREEADLSPSTTAAGPAQCGSWLSRVYQEMEAHKETMGKYCAHILADYLNVISGYNHGGSGLRREVDTALRPGAFALLDACSGNDLQQLHAALGEGARRGALMTLRHDYELHYKYTGKV 2037
BLAST of NO01G04890 vs. NCBI_GenBank
Match: GAY00296.1 (Hypothetical protein PINS_008125 [Pythium insidiosum]) HSP 1 Score: 69.7 bits (169), Expect = 1.100e-7 Identity = 50/154 (32.47%), Postives = 82/154 (53.25%), Query Frame = 0
Query: 1665 EVFGVACGLLSALLKHHSRLVYQCAPPFFLLTRALLRALLSENSNGMSVGWGPTAVKAWT----RLAEHLAGHATPLRRHLMLLLVDYLHVCPH--LRQELKGELQPAAFALMDALSSFEVQHMHAALLDAAGQALLKKLHSDYQQRYKYRGKV 1813
E++ ++ LL +++HH + P ALLR L ++ + P V W+ RL +L H +R+H++ LLV YL H L ++ L+ FAL++ S+FE + ++A+ LDAAG++LLK L + Y+ Y+Y GKV
Sbjct: 1268 ELWLLSYHLLLRVVRHHFASLLHALPLMVDALNALLRVLTTQAAGTTP---PPRHVLEWSANLARLYGYLKPHDAAVRKHVVYLLVAYLRGVTHGALPLAVQQRLRAGVFALLEICSTFEKEQLYAS-LDAAGKSLLKSLDTSYKLTYRYAGKV 1417
BLAST of NO01G04890 vs. NCBI_GenBank
Match: XP_009826738.1 (hypothetical protein H257_04063 [Aphanomyces astaci] >ETV83308.1 hypothetical protein H257_04063 [Aphanomyces astaci]) HSP 1 Score: 68.9 bits (167), Expect = 1.800e-7 Identity = 45/142 (31.69%), Postives = 75/142 (52.82%), Query Frame = 0
Query: 1673 LLSALLKHHSRLVYQCAPPFFLLTRALLRALLSENSNGMSVGWGPTAVKA--WTRLAEHLAGHATPLRRHLMLLLVDYLHVCPHLRQELKGELQPAAFALMDALSSFEVQHMHAALLDAAGQALLKKLHSDYQQRYKYRGKV 1813
LL LL+ + + Q P F ALLRALL + S + A TRL ++ HAT R+H++ +L ++ + L +++G L+P +AL D S +E + ++ LD G+ LLK + + Y++ ++Y GKV
Sbjct: 1303 LLLRLLRQYHTTLPQYLPHFVAGCNALLRALLYAAAKADSTDHNLLHLWASNLTRLYGYMLPHATSFRKHMVYMLSEFFYKHDALPVDVQGTLRPGIYALFDICSKYEKEQLYGT-LDGTGKVLLKAIDAHYKESHQYTGKV 1443
BLAST of NO01G04890 vs. NCBI_GenBank
Match: GAQ84915.1 (hypothetical protein KFL_002120090 [Klebsormidium nitens]) HSP 1 Score: 67.4 bits (163), Expect = 5.200e-7 Identity = 46/151 (30.46%), Postives = 78/151 (51.66%), Query Frame = 0
Query: 1670 ACGLLSALLKHHSRLVYQCAPPFFLLTRALLRALLSENSNGMSVGWGPTAVKAWTRLAEHLAGHATPLRRHLMLLLVDYL-HVC------PHLRQELKGELQPAAFALMDALSSFEVQHMHAAL-LDAAGQALLKKLHSDYQQRYKYRGKV 1813
A LL A+L+H + V +CA +A+L+A+ + + + + TA A R+ E + H L + + +L DYL +C + ++ L+ FAL D+ S +++Q +HA+L DA + L L DY++R+KY GKV
Sbjct: 2154 ASRLLQAVLRHRPKEVRRCAALLVGSLQAMLQAIAAWSQDAVRQEAAGTACAALRRVYEEVGNHKASLSHYCVHMLADYLAALCGLTASKDAISRDAATTLRSGIFALFDSCSPYDLQQLHASLGADATRRNALAALRQDYEKRHKYTGKV 2304 The following BLAST results are available for this feature:
BLAST of NO01G04890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G04890 ID=NO01G04890|Name=NO01G04890|organism=Nannochloropsis oceanica|type=gene|length=5738bpback to top protein sequence of NO01G04890.1 >NO01G04890.1-protein ID=NO01G04890.1-protein|Name=NO01G04890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1813bpback to top Synonyms
Publications
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