jgi.p|Nanoce1779_2|577545, gene_514 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577545
Unique Name	gene_514
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_3:1244968..1249911 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577631
ProteinId	577545
Product name	Urb2/Npa2 family-domain containing protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1244968..1249911 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL047	ncniL047	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04890	NO01G04890	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577545	mRNA_514-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577545	mRNA_514	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|577545

>mRNA_514-protein ID=mRNA_514-protein|Name=jgi.p|Nanoce1779_2|577545|organism=Nannochloropsis oceanica|type=polypeptide|length=1394bp
MSMKDDLRVTKQGLQQSQQQEEGGDGQEDHGATAAAAAGQKRRDIEMAAA
AASSSSLVSRPAFALGVKLWSLLWNDSCKEEGHQEAQEEEEQHTSAAATR
THRLVAGRRVLEAMLQLNVYHYDSDQSSAGQYRAVEAIFLELLNSEDTRE
GWNEEERDTEVTDMEGEEVRCLATLLRIDHRVADTCLSQLLALLTQRFAV
VSKQPSFKEEWTEEKRNEQQRQQVVASANNALRQACARTVAEVIETYSRL
RQNDVLFQALLSLEVEVDGNAAVTALAGHPEVIAAVGRAVRECPPPQLVP
LWDLLAPTSVFSNSRKEEGDMKLEEKETKIVTHTALGHLGIRSKLFGLFV
DNVRVSPLNALELGRRTSATMAQMTQVALKQLQEGVTATVGKGGKTRKKD
KKGRQEKHTAGTEGETGAGAGAGPDPAAVGVALDLYARLLEVQAMCSFWL
DNSNSSSSSSIGDSSSSISALEFPSGASFLQTIISHASRLSSCKGTLDKV
VVGRLRQLLLERGLRGVSATPEGMADTEAEPLELVAFLFQGHEKDDDTTS
DGHDADGGAREQYHRRLNLSLLGASLPLWASHCKTEHLDLLWSAVFFDTL
TVVRSKKPNINRPSIRLLTDAAFYEITPLAYRCVPSWARLILDCLVDMSG
RALEAVEGYVEGGDVKSLFCATEQVLSLPTRAVRTQGKIKHKQGQAAAAA
ASKGSSSSSVFQLTAKSVGKTNELEEDRMARATHCCRLLNSMPPGYLPTE
HEPLRFLLSILLSRVVTCNRAHASAQTLHLTLSASSLLALQRAPDAIVPL
LATSTSLIDKWLVKLVLPARVADSTYSSSPFSESKYIGLQLLGCYVDHLV
KDKGAEAGMTEEQQQHCVAQLLQALMKQGLLATLEGDTATTGKDEEEDMR
HALRAIRVLVAPYLGSDGLSAGGRETLVEVVVKQLGPAVMRRLSSSLSSE
ALRASAALLELIGRKGYESKENEGTNMQRMASFHLPHNAVSQVLAKATTS
ARGQEKRDTADGVMEFLAAYLQWAERMEEEAEEEGIILEEMVQLAVLSSS
SVSLQSSADEEDQHAACVAAAIGNARGGVNVQLQALYRLIHLLDAVKVPS
PSSHPENNESKTRRAAETLARAGRLFEVLVEQGGMGEGPGAEAVRQVAQT
FLGRMTQLLSELFARVLSSRTIDNSDIGAETLAGILRGLSVLRLYVRKRW
LFLSGGGMRVEDLGRLYVAVASLPLALQGMKGEEQVDGEQVSQREEVFGV
ACGLLSALLKHHSRLVYQCAPPFFLLTRALLRALLSENSNGMSVGWGPTA
VKAWTRLAEHLAGHATPLRRHLMLLLVDYLHVCPHLRQELKGELQPAAFA
LMDALSSFEVQHMHAALLDAAGQALLKKLHSDYQQRYKYRGKV*

Synonyms

Publications