NO01G04750, NO01G04750 (gene) Nannochloropsis oceanica

Overview
NameNO01G04750
Unique NameNO01G04750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2413
Alignment locationchr1:1254643..1257055 +

Link to JBrowse

Properties
Property NameValue
DescriptionGlycerol-3-phosphate dehydrogenase [NAD( )]
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1254643..1257055 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287NAD binding
GO:0004367glycerol-3-phosphate dehydrogenase [NAD+] activity
GO:0005515protein binding
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0046168glycerol-3-phosphate catabolic process
GO:0005975carbohydrate metabolic process
GO:0006072glycerol-3-phosphate metabolic process
GO:0055114oxidation-reduction process
GO:0009987cellular process
GO:0009056catabolic process
GO:0005975carbohydrate metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0009331glycerol-3-phosphate dehydrogenase complex
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR0089276-PGluconate_DH_C-like
IPR036291NAD(P)-bd_dom_sf
IPR011128G3P_DH_NAD-dep_N
IPR006109G3P_DH_NAD-dep_C
IPR006168G3P_DH_NAD-dep
Homology
[Close]
BLAST of NO01G04750 vs. NCBI_GenBank
Match: EWM29423.1 (glycerol-3-phosphate dehydrogenase 1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 372.5 bits (955), Expect = 1.200e-99
Identity = 181/272 (66.54%), Postives = 219/272 (80.51%), Query Frame = 0 
Query:   17 GIYLLLSAAIVLLMVL---------------NPAKGQSPLHKVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLRSCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDV-EVCVLMGANVADEVARDEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKVCCFR 273
            GI++L+SAA+  L+++                P+      H ++IVGSGNFGSA+ARLLGRNVL+ PKHF +++RMWVFEEEL DGRKLS+VINA+HENVKYLPG++LP+NVRA+PDL  AVR+ASI++ V+P Q    LLPR+ SC+ +GA+AVSL+KGLDFDD GPVLITD+IR+GLG DV EVCVLMGANVADE+ARDEFCEAT+GC D  GAG ++Q+LFDCP FRVEV PDP+GVELCGALKNVVAL AGFCDGL WGGNTK    R
Sbjct:   17 GIFVLMSAALSFLLIVWRFSLAEAGRSHHFEGPSSNPVKPHSITIVGSGNFGSAIARLLGRNVLRSPKHFRSEVRMWVFEEELDDGRKLSDVINADHENVKYLPGIQLPTNVRAVPDLSDAVRNASIVVFVLPHQFLPGLLPRISSCLHRGAMAVSLVKGLDFDDEGPVLITDMIREGLGEDVSEVCVLMGANVADEMARDEFCEATLGCPDPEGAGAVLQQLFDCPTFRVEVTPDPIGVELCGALKNVVALAAGFCDGLDWGGNTKAAIIR 288
[Close]
BLAST of NO01G04750 vs. NCBI_GenBank
Match: ETI39600.1 (glycerol-3-phosphate dehydrogenase (NAD(+)) [Phytophthora parasitica P1569])

HSP 1 Score: 280.0 bits (715), Expect = 7.900e-72
Identity = 143/235 (60.85%), Postives = 182/235 (77.45%), Query Frame = 0 
Query:   43 KVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLR-SCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVARDEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKVCCFRACLN 277
            KV +VGSGN+GSA+AR++G N  + P+ FE DI MWVFEE++ DGRKL+E+IN+EHENVKYLPG +LP N+ A+PDL  AVR A I+I  VP Q    +L  ++   ++QGA+AVSLIKG+DFD+NG VL++DLIRKGL  D++  VLMGANVA+EVA  +FCE+T+GC D    G L++ LF+ P FRV+VA DP GVE+CGALKNVVALGAGFCDGL +GGNTK    R  L+
Sbjct:    4 KVCLVGSGNWGSAIARIIGENTKKLPEMFERDINMWVFEEQV-DGRKLTEIINSEHENVKYLPGYKLPENIIAVPDLLEAVRGADILIFCVPHQFLGRMLVSIKEQGLKQGAMAVSLIKGIDFDENGVVLVSDLIRKGL--DIDCSVLMGANVANEVAAGDFCESTLGCADLR-HGALLRELFNAPTFRVDVALDPHGVEMCGALKNVVALGAGFCDGLKYGGNTKAAIIRIGLS 234
[Close]
BLAST of NO01G04750 vs. NCBI_GenBank
Match: ETL33156.1 (glycerol-3-phosphate dehydrogenase (NAD(+)) [Phytophthora parasitica] >ETL86432.1 glycerol-3-phosphate dehydrogenase (NAD(+)) [Phytophthora parasitica] >ETO72990.1 glycerol-3-phosphate dehydrogenase (NAD(+)) [Phytophthora parasitica P1976] >ETP14151.1 glycerol-3-phosphate dehydrogenase (NAD(+)) [Phytophthora parasitica CJ01A1] >KUF78582.1 Glycerol-3-phosphate dehydrogenase [Phytophthora nicotianae])

HSP 1 Score: 280.0 bits (715), Expect = 7.900e-72
Identity = 143/235 (60.85%), Postives = 182/235 (77.45%), Query Frame = 0 
Query:   43 KVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLR-SCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVARDEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKVCCFRACLN 277
            KV +VGSGN+GSA+AR++G N  + P+ FE DI MWVFEE++ DGRKL+E+IN+EHENVKYLPG +LP N+ A+PDL  AVR A I+I  VP Q    +L  ++   ++QGA+AVSLIKG+DFD+NG VL++DLIRKGL  D++  VLMGANVA+EVA  +FCE+T+GC D    G L++ LF+ P FRV+VA DP GVE+CGALKNVVALGAGFCDGL +GGNTK    R  L+
Sbjct:    4 KVCLVGSGNWGSAIARIIGENTKKLPETFERDINMWVFEEQV-DGRKLTEIINSEHENVKYLPGYKLPENIIAVPDLLEAVRGADILIFCVPHQFLGRMLVSIKEQGLKQGAMAVSLIKGIDFDENGVVLVSDLIRKGL--DIDCSVLMGANVANEVAAGDFCESTLGCADLR-HGALLRELFNAPTFRVDVALDPHGVEMCGALKNVVALGAGFCDGLKYGGNTKAAIIRIGLS 234
[Close]
BLAST of NO01G04750 vs. NCBI_GenBank
Match: XP_008910603.1 (glycerol-3-phosphate dehydrogenase (NAD(+)) [Phytophthora parasitica INRA-310] >ETN04128.1 glycerol-3-phosphate dehydrogenase (NAD(+)) [Phytophthora parasitica INRA-310])

HSP 1 Score: 280.0 bits (715), Expect = 7.900e-72
Identity = 143/235 (60.85%), Postives = 182/235 (77.45%), Query Frame = 0 
Query:   43 KVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLR-SCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVARDEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKVCCFRACLN 277
            KV +VGSGN+GSA+AR++G N  + P+ FE DI MWVFEE++ DGRKL+E+IN+EHENVKYLPG +LP N+ A+PDL  AVR A I+I  VP Q    +L  ++   ++QGA+AVSLIKG+DFD+NG VL++DLIRKGL  D++  VLMGANVA+EVA  +FCE+T+GC D    G L++ LF+ P FRV+VA DP GVE+CGALKNVVALGAGFCDGL +GGNTK    R  L+
Sbjct:    4 KVCLVGSGNWGSAIARIIGENTKKLPETFERDINMWVFEEQV-DGRKLTEIINSEHENVKYLPGYKLPDNIIAVPDLLEAVRGADILIFCVPHQFLGRMLVSIKEQGLKQGAMAVSLIKGIDFDENGVVLVSDLIRKGL--DIDCSVLMGANVANEVAAGDFCESTLGCADLR-HGALLRELFNAPTFRVDVALDPHGVEMCGALKNVVALGAGFCDGLKYGGNTKAAIIRIGLS 234
[Close]
BLAST of NO01G04750 vs. NCBI_GenBank
Match: ETP37499.1 (glycerol-3-phosphate dehydrogenase (NAD(+)) [Phytophthora parasitica P10297])

HSP 1 Score: 280.0 bits (715), Expect = 7.900e-72
Identity = 143/235 (60.85%), Postives = 182/235 (77.45%), Query Frame = 0 
Query:   43 KVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLR-SCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVARDEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKVCCFRACLN 277
            KV +VGSGN+GSA+AR++G N  + P+ FE DI MWVFEE++ DGRKL+E+IN+EHENVKYLPG +LP N+ A+PDL  AVR A I+I  VP Q    +L  ++   ++QGA+AVSLIKG+DFD+NG VL++DLIRKGL  D++  VLMGANVA+EVA  +FCE+T+GC D    G L++ LF+ P FRV+VA DP GVE+CGALKNVVALGAGFCDGL +GGNTK    R  L+
Sbjct:    4 KVCLVGSGNWGSAIARIIGENTKKLPETFERDINMWVFEEQV-DGRKLTEIINSEHENVKYLPGYKLPENIIAVPDLLEAVRGADILIFCVPHQFLGRMLVSIKEQGLKQGAMAVSLIKGIDFDENGVVLVSDLIRKGL--DIDCSVLMGANVANEVAAGDFCESTLGCADLR-HGALLRELFNAPTFRVDVALDPHGVEMCGALKNVVALGAGFCDGLKYGGNTKAAIIRIGLS 234
[Close]
BLAST of NO01G04750 vs. NCBI_GenBank
Match: XP_009536648.1 (hypothetical protein PHYSODRAFT_348148 [Phytophthora sojae] >EGZ08476.1 hypothetical protein PHYSODRAFT_348148 [Phytophthora sojae])

HSP 1 Score: 278.9 bits (712), Expect = 1.800e-71
Identity = 141/235 (60.00%), Postives = 182/235 (77.45%), Query Frame = 0 
Query:   43 KVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLR-SCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVARDEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKVCCFRACLN 277
            KV +VGSGN+GSA+AR++G N    P+ FE DI MWVFEE++ +GRKL+E+IN+EHENVKYLPG +LP N+ A+PDL  AVR A I+I  VP Q    +L  ++   +++GA+AVSLIKG+DFD+NG VL++DLIRKGL  D++  VLMGANVA+EVA  +FCE+T+GC D    G L++ LF+CP FRV+VA DP GVE+CGALKNVVALGAGFCDG+ +GGNTK    R  L+
Sbjct:    4 KVCLVGSGNWGSAIARIIGENTKNLPETFERDINMWVFEEQV-NGRKLTEIINSEHENVKYLPGYKLPENIIAVPDLLEAVRGADILIFCVPHQFLGRMLVSIKEQGLKEGAMAVSLIKGIDFDENGVVLVSDLIRKGL--DIDCSVLMGANVANEVAAGDFCESTLGCADLR-HGALLRELFNCPTFRVDVALDPHGVEMCGALKNVVALGAGFCDGVKYGGNTKAAIIRIGLS 234
[Close]
BLAST of NO01G04750 vs. NCBI_GenBank
Match: POM71670.1 (Glycerol-3-phosphate dehydrogenase (NAD(+)) [Phytophthora palmivora var. palmivora])

HSP 1 Score: 278.1 bits (710), Expect = 3.000e-71
Identity = 141/235 (60.00%), Postives = 181/235 (77.02%), Query Frame = 0 
Query:   43 KVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLR-SCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVARDEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKVCCFRACLN 277
            KV +VGSGN+GSA+AR++G N    P+ FE DI MWVFEE++ +GRKL+E+IN EHENVKYLPG +LP N+ A+PDL  AVRDA I+I  VP Q    +L  ++   +++GA+AVSLIKG+DFD+NG VL++DLIRKGL  D++  VLMGANVA+EVA  +FCE+T+GC D    G +++ LF+ P FRV+VA DP GVE+CGALKNVVALGAGFCDGL +GGNTK    R  L+
Sbjct:    4 KVCLVGSGNWGSAIARIIGENTKNLPESFERDINMWVFEEQV-NGRKLTEIINTEHENVKYLPGYKLPENIIAVPDLLEAVRDADILIFCVPHQFLGRMLVSIKEQGLKEGAMAVSLIKGIDFDENGVVLVSDLIRKGL--DIDCSVLMGANVANEVAAGDFCESTLGCADLR-HGAVLRELFNAPTFRVDVALDPHGVEMCGALKNVVALGAGFCDGLKYGGNTKAAIIRIGLS 234
[Close]
BLAST of NO01G04750 vs. NCBI_GenBank
Match: ETK79767.1 (glycerol-3-phosphate dehydrogenase (NAD(+)) [Phytophthora parasitica] >ETM39578.1 glycerol-3-phosphate dehydrogenase (NAD(+)) [Phytophthora parasitica])

HSP 1 Score: 277.3 bits (708), Expect = 5.100e-71
Identity = 142/235 (60.43%), Postives = 181/235 (77.02%), Query Frame = 0 
Query:   43 KVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLR-SCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVARDEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKVCCFRACLN 277
            KV +VGSGN+GSA+AR++G N  + P+ FE DI MWVFEE++  GRKL+E+IN+EHENVKYLPG +LP N+ A+PDL  AVR A I+I  VP Q    +L  ++   ++QGA+AVSLIKG+DFD+NG VL++DLIRKGL  D++  VLMGANVA+EVA  +FCE+T+GC D    G L++ LF+ P FRV+VA DP GVE+CGALKNVVALGAGFCDGL +GGNTK    R  L+
Sbjct:    4 KVCLVGSGNWGSAIARIIGENTKKLPETFERDINMWVFEEQV-GGRKLTEIINSEHENVKYLPGYKLPENIIAVPDLLEAVRGADILIFCVPHQFLGRMLVSIKEQGLKQGAMAVSLIKGIDFDENGVVLVSDLIRKGL--DIDCSVLMGANVANEVAAGDFCESTLGCADLR-HGALLRELFNAPTFRVDVALDPHGVEMCGALKNVVALGAGFCDGLKYGGNTKAAIIRIGLS 234
[Close]
BLAST of NO01G04750 vs. NCBI_GenBank
Match: XP_024585863.1 (glycerol-3-phosphate dehydrogenase (nad()) [Plasmopara halstedii] >CEG49494.1 glycerol-3-phosphate dehydrogenase (nad()) [Plasmopara halstedii])

HSP 1 Score: 276.9 bits (707), Expect = 6.700e-71
Identity = 143/232 (61.64%), Postives = 181/232 (78.02%), Query Frame = 0 
Query:   42 HKVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLR-SCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVARDEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKVCCFR 273
            HKV +VGSGN+GSA+AR++G N  + P+ FE +I MWVFEE++ DGRKL+E+IN+EHENVKYLPG +LP N+ A+PDL  AVRDA I+I  VP Q    +L  ++   I+QGA+AVSLIKG+DFD NG VL++DLIRKGL  +++  VLMGANVA+EVA  +FCE+T+GC D    G +++ LF+ P FRV+VA DP GVELCGALKNVVALGAGFCDGL +GGNTK    R
Sbjct:    3 HKVCLVGSGNWGSAIARIIGENTAKLPE-FEPNINMWVFEEQV-DGRKLTEIINSEHENVKYLPGYKLPENIIAVPDLLEAVRDADILIFCVPHQFLGRMLTSIKEQGIKQGALAVSLIKGIDFDKNGIVLVSDLIRKGL--NIDCSVLMGANVANEVAAGDFCESTLGCTDLR-HGAILRDLFNAPTFRVDVALDPNGVELCGALKNVVALGAGFCDGLKYGGNTKAAIIR 229
[Close]
BLAST of NO01G04750 vs. NCBI_GenBank
Match: XP_002905779.1 (glycerol-3-phosphate dehydrogenase [Phytophthora infestans T30-4] >EEY67131.1 glycerol-3-phosphate dehydrogenase [Phytophthora infestans T30-4])

HSP 1 Score: 273.9 bits (699), Expect = 5.700e-70
Identity = 140/236 (59.32%), Postives = 181/236 (76.69%), Query Frame = 0 
Query:   42 HKVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLR-SCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVARDEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKVCCFRACLN 277
            +KV +VGSGN+GSA+AR++G N  + P+ FE DI MWVFEE++ +GR L+E+IN+EHENVKYLPG +LP N+ A+PDL  AVR A I+I  VP Q    +L  ++   +++GA+AVSLIKG+DFD NG VL++DLIRKGL  D++  VLMGANVA+EVA  +FCE+T+GC D    G L++ LF+ P FRV+VA DP GVE+CGALKNVVALGAGFCDGL +GGNTK    R  L+
Sbjct:    3 NKVCLVGSGNWGSAIARIIGENTKKLPETFERDINMWVFEEQV-NGRNLTEIINSEHENVKYLPGYKLPENIIAVPDLLDAVRGADILIFCVPHQFLGRMLVSIKQQGLKEGAMAVSLIKGIDFDANGVVLVSDLIRKGL--DIDCSVLMGANVANEVAAGDFCESTLGCADLR-HGALLRELFNAPTFRVDVALDPHGVEMCGALKNVVALGAGFCDGLKYGGNTKAAIIRIGLS 234
The following BLAST results are available for this feature:
BLAST of NO01G04750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29423.11.200e-9966.54glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
ETI39600.17.900e-7260.85glycerol-3-phosphate dehydrogenase (NAD(+)) [Phyto... [more]
ETL33156.17.900e-7260.85glycerol-3-phosphate dehydrogenase (NAD(+)) [Phyto... [more]
XP_008910603.17.900e-7260.85glycerol-3-phosphate dehydrogenase (NAD(+)) [Phyto... [more]
ETP37499.17.900e-7260.85glycerol-3-phosphate dehydrogenase (NAD(+)) [Phyto... [more]
XP_009536648.11.800e-7160.00hypothetical protein PHYSODRAFT_348148 [Phytophtho... [more]
POM71670.13.000e-7160.00Glycerol-3-phosphate dehydrogenase (NAD(+)) [Phyto... [more]
ETK79767.15.100e-7160.43glycerol-3-phosphate dehydrogenase (NAD(+)) [Phyto... [more]
XP_024585863.16.700e-7161.64glycerol-3-phosphate dehydrogenase (nad()) [Plasmo... [more]
XP_002905779.15.700e-7059.32glycerol-3-phosphate dehydrogenase [Phytophthora i... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007792NSK007792Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04750.1NO01G04750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G04750.2NO01G04750.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524140gene_499Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100042g20gene1225Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04750.1NO01G04750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G04750.2NO01G04750.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04750 ID=NO01G04750|Name=NO01G04750|organism=Nannochloropsis oceanica|type=gene|length=2413bp
TGGAAATTTATTTCCTTCCTGTCTTAAGTTGTATATTGGTGGTGGCGTAG
TCAGGAAGGGAAATGTTGTTCTGGCTGGGTGAGGAGAGGTAGGGACATGC
GCAGGGAGTGGCCAATGACCAAATACGCTGCGGAAAAAGTCGCCAGTGCT
TGCACTTAAGCGAGACATGAGTTCCCGAGCTTGTGGTCATTCTATGAGGC
CGCGGCGTGAATGGCATGTGCCCCGCACGCTGGTATCATACGCGGGCAGG
AAGGCGTATCATTGCTGTGAGTGCCAGGACAGGATGGATATCATGGAGAA
GCACAACACGAGTTGTGAGAACCAGAAACGCCATGCGCGATTTCTTTCTT
GTTTTCGTTTGGTGTATGAGACATGTGAGTAAAAGGATTGCTGTGCTTTT
CCTGCGGATGACAGGAATAAGAAGATGTGGTAAAATGCTATTGATATTGC
ACTCTAGATCGGCGATCGCGACTTTTTCTCGGCACCCCTGCGTTTCTAGA
GTCAAGCTTGGAGCGGTAAGGTAACGCGTATCCCGGGTAGCTATACGGTT
TCATTGGTAAAATCATCTTTAAGACCCTTCCTCTTTTTCATGCAATCCAT
AACGCAGCCACACAGGTCCTGAGCCAACCAATCTCACCCCAAACTCCGCC
TACCTCCTCCACCCTTGTCCCCCTTCCTTGCCCTCCTCCTCCATTTGAGC
GCATGACCCAACCACCCAGCACCCTTGGCCATCTACCAAGCTGCAAATCC
GGTATCTACTTACTATTATCCGCGGCGATCGTGCTGCTGATGGTCCTCAA
CCCGGCCAAGGGCCAATCGCCTCTCCACAAGGTATCGATTGTGGGCAGCG
GCAACTTCGGTTCCGCCGTGGCCCGCCTCTTAGGTCGCAATGTCCTGCAA
CACCCCAAACACTTTGAGACGGATATTCGTATGTGGGTCTTTGAGGAGGA
GCTACCCGACGGTCGGAAGTTGAGCGAGGTCATTAATGCTGAGCATGAAA
ACGTCAAGTACTTGCCTGGGGTCCGACTACCCTCCAATGTACGGGCAATC
CCTGATTTGGAAGTCGCGGTAAGAGATGCATCAATCATCATTATGGTCGT
GCCGCAACAACATTGTGCCACCTgtgagttctgcatactgggaattggat
agaagactgggggtgaagtgtccaggggggcacatgtcccgattgccggg
gatgtgtatgtcgctcgcgtgctttggcttgttgattttaagattaaaga
ggttctccccatctctaatattctccatttaccatttagcctatagcaac
tagtgcttggatatcccttacttttagtcgtcctctcttcccaccaccta
ttccctcttccgccccgaatagTGCTTCCTCGCCTCCGGTCCTGCATACG
GCAAGGTGCCGTAGCCGTCTCTTTGATCAAAGGGTTAGACTTCGATGACA
ATGGTCCCGTGCTTATCACTGACTTAATTCGGAAGGGCCTGGGCGGAGAT
GTCGAAGTTTGCGTCTTGATGGGCGCCAACGTGGCCGACGAAGTGGCTCG
CGATGAGTTTTGCGAGGCCACAGTCGGGTGTCGTGATACGACCGGGGCAG
GTATATTGGTACAGCGGCTATTCGATTGCCCGAGATTTCGAGTGGAGGTG
GCGCCTGACCCTATGGGCGTCGAGCTGTGCGGAGCCCTGAAAAATGTGGT
GGCCCTTGGGGCGGGCTTCTGCGATGGGCTGGGCTGGGGGGGGAATACGA
AGGTATGTTGTTTTCGTGCGTGCTTAAATGCCGGTATTTGATTATTGTTA
CAGGTTGATGTTAGTGCTGACCGTCGCTTCATCCCGTGCTTTCCATTCAT
TCGTCGCTCGTTTCCTCTTTTGGTCATGCCCTCATTCCTTCTTTCCGTAG
GCAGCTGTCATTCGCCGAGGCCTCCTAGAAATGCGTCGGCTCTGCAAACT
CCTTGATCCCCATGTTCGCGATGCCACGTTCTTCGAAAGCTGTGGTGTGG
CCGATCTTATTACCACCTGCTATGGCGGGCGGAACAGGAAGTGTGCCGAG
CGTTTCGCCCGGGCAGACGGAAACATGTCGTGGGACGACATCGAGAAGGA
GCAATTGGGGGGTCAACACTTGCAAGGGACTAAGACAGCGGCCAATCTCC
ACAGTCTACTAGAGCGAAAGAGGGTAGTGGGTGATTTTCCTTTGTTTTCC
ACAGTGTACCAAATTGCATTTCGAGGGCGACATCCAAGAACTTTGGTAAA
TGACCTGTGATGTTTCTCGTAACGGGGACACCAAAATCTCTAGAATGAGT
CGCCAGATGTGCCCCATAAGATGTTGACAATAGTAATTAAGCAAGATAAG
GTATTTACAAATGATACAGCAATATTTTAAAACGTAACGATCTGGTGGCA
AGTGCATGGTAGC
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protein sequence of NO01G04750.1

>NO01G04750.1-protein ID=NO01G04750.1-protein|Name=NO01G04750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MTQPPSTLGHLPSCKSGIYLLLSAAIVLLMVLNPAKGQSPLHKVSIVGSG
NFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHEN
VKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLRSCIR
QGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVAR
DEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVV
ALGAGFCDGLGWGGNTKAAVIRRGLLEMRRLCKLLDPHVRDATFFESCGV
ADLITTCYGGRNRKCAERFARADGNMSWDDIEKEQLGGQHLQGTKTAANL
HSLLERKRVVGDFPLFSTVYQIAFRGRHPRTLVNDL*
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protein sequence of NO01G04750.2

>NO01G04750.2-protein ID=NO01G04750.2-protein|Name=NO01G04750.2|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MTQPPSTLGHLPSCKSGIYLLLSAAIVLLMVLNPAKGQSPLHKVSIVGSG
NFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHEN
VKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLRSCIR
QGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVAR
DEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVV
ALGAGFCDGLGWGGNTKVCCFRACLNAGI*
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Synonyms
Publications