NO01G03680, NO01G03680 (gene) Nannochloropsis oceanica

Overview
NameNO01G03680
Unique NameNO01G03680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1308
Alignment locationchr1:986867..988174 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeptide chain release factor 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:986867..988174 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003747translation release factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006415translational termination
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I_II
IPR005139PCRF
Homology
[Close]
BLAST of NO01G03680 vs. NCBI_GenBank
Match: WP_002796124.1 (peptide chain release factor 1 [Microcystis aeruginosa] >B0JYC5.1 RecName: Full=Peptide chain release factor 1; Short=RF-1 >BAG05163.1 peptide chain release factor 1 [Microcystis aeruginosa NIES-843] >CCI22624.1 Peptide chain release factor 1 [Microcystis aeruginosa PCC 9809] >OPF15077.1 peptide chain release factor 1 [Microcystis aeruginosa KW])

HSP 1 Score: 451.8 bits (1161), Expect = 2.400e-123
Identity = 217/354 (61.30%), Postives = 285/354 (80.51%), Query Frame = 0 
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKL 428
            +S++  KL S  +TYKELT RL DPDV  NP  L ++ + R ++E+ V  Y+ WQK  EDL+GAKQ+F E+A DPE++EMA LE+ ELEEK   +E +L +L+LP DPLD++N+MLEIRAGTGG EA ++AGDL+ +Y +Y +T  W+V ++ ES+ D GG+K A+LEI+G+ VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVA+MPEVDDV+V IDPKDI LTTARSGG+GGQNVNKVETA+DL HKP+GIR+FCT+ERSQL+N+E A+ +LR++L+ ++ ++Q+EAV+  RRSQ+G+GSRSEKIRTYN+KD+R TDHRL  NF L   LDG++ ++   C+  +QQEKL
Sbjct:    3 ESYLLDKLQSVEQTYKELTRRLADPDVTGNPGELHRLAKSRASLEETVNTYEIWQKSQEDLIGAKQIFKESASDPELREMAALEVAELEEKIATLEDQLTILLLPRDPLDEKNIMLEIRAGTGGDEASIWAGDLVRLYSKYAETQNWKVSLLSESQADMGGFKEAILEIKGDNVYSKLKFEAGVHRVQRVPLTEASGRVHTSTATVAIMPEVDDVEVHIDPKDIELTTARSGGAGGQNVNKVETAVDLIHKPTGIRVFCTEERSQLQNRERAMQILRAKLYDMKLQEQQEAVSSMRRSQVGTGSRSEKIRTYNYKDNRLTDHRLNQNFSLDRILDGDIEEVIQSCIAKDQQEKL 356
[Close]
BLAST of NO01G03680 vs. NCBI_GenBank
Match: WP_106173471.1 (peptide chain release factor 1 [filamentous cyanobacterium CCP2] >PSB14410.1 peptide chain release factor 1 [filamentous cyanobacterium CCP2])

HSP 1 Score: 451.1 bits (1159), Expect = 4.000e-123
Identity = 221/357 (61.90%), Postives = 283/357 (79.27%), Query Frame = 0 
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAM 431
            ++++  KL S  +T+ ELT RL DPD+  NPT   +V + R  +ED V  Y +W+K  EDL GAKQ+  EA GD EM+EMA LE+ ELE K EM+E +L VL+LP DP D++N+MLEIRAGTGG EA ++AGDL+ +Y RY +  GWRV+++ ES  D GG+K A+LEIQG++VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVAVMPEVDDV+V+IDPKDI LTTARSGG+GGQNVNKVETA+DLFHKP+GIRIFCT+ERSQL+N+E A+ +LR++L+ ++  +Q+EAV   RRSQ+G+G+RSEKIRTYN+KD+R TDHRLG NF L   L+G+L  +   C+  +QQE+LE +
Sbjct:    3 ETYLLEKLKSVEQTFDELTRRLADPDIATNPTEFQRVAKARSALEDTVTTYDDWKKSQEDLEGAKQILKEAGGDVEMREMASLEVAELESKIEMLEARLKVLLLPRDPNDEKNIMLEIRAGTGGDEASIWAGDLVRMYSRYAEGQGWRVKLLSESLADMGGFKEAILEIQGDQVYSKLKFEAGVHRVQRVPVTEAGGRVHTSTATVAVMPEVDDVEVEIDPKDIELTTARSGGAGGQNVNKVETAVDLFHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEIKLREQQEAVTSMRRSQVGTGARSEKIRTYNYKDNRVTDHRLGQNFTLSPVLEGDLETVIQSCISQDQQERLEEL 359
[Close]
BLAST of NO01G03680 vs. NCBI_GenBank
Match: AKV66660.1 (Peptide chain release factor 1 [Microcystis panniformis FACHB-1757])

HSP 1 Score: 450.3 bits (1157), Expect = 6.900e-123
Identity = 217/354 (61.30%), Postives = 283/354 (79.94%), Query Frame = 0 
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKL 428
            +S++  KL S  +TYKELT RL DPDV  NP  L ++ + R ++E+ V  Y+ WQK  EDL+GAKQ+F E+AGDPE++EMA LE+ ELE K   +E +L +L+LP DPLD++N+MLEIRAGTGG EA ++AGDL+ +Y +Y +T  W+V ++ ES  D GG+K A+LEI+G+ VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVA+MPEVDDV+V IDPKDI LTTARSGG+GGQNVNKVETA+DL HKP+GIR+FCT+ERSQL+N+E A+ +LR++L+ ++ ++Q+EAV+  RRSQ+G+GSRSEKIRTYN+KD+R TDHRL  NF L   LDG++ D+   C+  +QQ KL
Sbjct:    3 ESYLLNKLQSVEQTYKELTRRLADPDVTGNPGELHRLAKSRASLEETVNTYEIWQKSQEDLIGAKQIFKESAGDPELREMAALEVAELEAKIATLEDQLTILLLPRDPLDEKNIMLEIRAGTGGDEASIWAGDLVRLYSKYAETQNWKVSLLSESPADMGGFKEAILEIKGDNVYSKLKFEAGVHRVQRVPLTEASGRVHTSTATVAIMPEVDDVEVHIDPKDIELTTARSGGAGGQNVNKVETAVDLIHKPTGIRVFCTEERSQLQNRERAMQILRAKLYDMKLQEQQEAVSSMRRSQVGTGSRSEKIRTYNYKDNRLTDHRLNQNFSLDRILDGDIEDVIQSCIAKDQQGKL 356
[Close]
BLAST of NO01G03680 vs. NCBI_GenBank
Match: WP_073598912.1 (peptide chain release factor 1 [Hydrococcus rivularis] >OKH24430.1 peptide chain release factor 1 [Hydrococcus rivularis NIES-593])

HSP 1 Score: 449.1 bits (1154), Expect = 1.500e-122
Identity = 215/357 (60.22%), Postives = 286/357 (80.11%), Query Frame = 0 
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAM 431
            +S++  KL S  +T+KELT RL DPD+  NP  L +V++ R ++E+ V  Y+ W+K  EDL GAKQ+  E+  DPE+KEMA LE++ELEEK   +EK+L +L+LP DP DD+N+MLEIRAGTGG EA ++AGDL+ +Y RY ++  W+V++V ES  + GG+K A+LEIQG++VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVA+MPEVD+V+V+IDPKDI + TARSGG+GGQNVNKVETA+DL HKP+GIRIFCT+ERSQL+N+E A+ +LR++L+ ++ ++Q+E V   RRSQ+G+G+RSEKIRTYN+KD+R TDHRLG NF L   L+GNL D+   C+  +QQE+LE +
Sbjct:    3 ESYLLEKLQSVEQTFKELTRRLADPDIATNPEELQRVSKARSSLEETVNTYEAWKKTKEDLAGAKQILKESGSDPELKEMAALEVEELEEKLAQLEKQLKILLLPRDPNDDKNIMLEIRAGTGGDEASIWAGDLVRMYSRYAESQNWKVKLVSESLAELGGFKEAILEIQGDRVYSKLKFEAGVHRVQRVPVTEAGGRVHTSTATVAIMPEVDEVEVEIDPKDIEIKTARSGGAGGQNVNKVETAVDLIHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEIKLQEQQEVVTSMRRSQVGTGARSEKIRTYNYKDNRVTDHRLGQNFNLAAALEGNLEDMIQACIAQDQQERLEEL 359
[Close]
BLAST of NO01G03680 vs. NCBI_GenBank
Match: WP_002764604.1 (peptide chain release factor 1 [Microcystis aeruginosa] >CCI04800.1 Peptide chain release factor 1 [Microcystis aeruginosa PCC 9443] >CCI16752.1 Peptide chain release factor 1 [Microcystis aeruginosa PCC 9807])

HSP 1 Score: 449.1 bits (1154), Expect = 1.500e-122
Identity = 216/354 (61.02%), Postives = 283/354 (79.94%), Query Frame = 0 
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKL 428
            +S++  KL S  +TY ELT RL DPDV +NP  L ++ + R ++E+ V  Y+ WQK  EDL+GAKQ+F E+A DPE++EMA LE+ ELEEK   +E +L +L+LP DPLD++N+MLEIRAGTGG EA ++AGDL+ +Y +Y +T  W+V ++ ES  D GG+K A+LEI+G+ VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVA+MPEVDDV+V IDPKDI LTTARSGG+GGQNVNKVETA+DL HKP+GIR+FCT+ERSQL+N+E A+ +LR++L+ ++ ++Q+EAV+  RRSQ+G+GSRSEKIRTYN+KD+R TDHRL  NF L   LDG++ D+   C+  +QQ KL
Sbjct:    3 ESYLLNKLQSVEQTYTELTRRLADPDVTSNPGELQRLAKSRASLEETVNTYEIWQKSQEDLIGAKQIFKESASDPELREMAALEVAELEEKIATLEDQLTILLLPRDPLDEKNIMLEIRAGTGGDEASIWAGDLVRLYSKYAETQNWKVSLLSESPADMGGFKEAILEIKGDNVYSKLKFEAGVHRVQRVPLTEASGRVHTSTATVAIMPEVDDVEVHIDPKDIELTTARSGGAGGQNVNKVETAVDLIHKPTGIRVFCTEERSQLQNRERAMQILRAKLYDMKLQEQQEAVSSMRRSQVGTGSRSEKIRTYNYKDNRLTDHRLNQNFSLDRILDGDIEDVIQSCIAKDQQGKL 356
[Close]
BLAST of NO01G03680 vs. NCBI_GenBank
Match: WP_002743968.1 (peptide chain release factor 1 [Microcystis aeruginosa] >CAO86953.1 unnamed protein product [Microcystis aeruginosa PCC 7806] >ELS47898.1 peptide chain release factor 1 [Microcystis aeruginosa DIANCHI905] >ARI81610.1 hypothetical protein BH695_2329 [Microcystis aeruginosa PCC 7806SL])

HSP 1 Score: 448.7 bits (1153), Expect = 2.000e-122
Identity = 216/357 (60.50%), Postives = 284/357 (79.55%), Query Frame = 0 
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAM 431
            +S++  KL S  +TY ELT RL DPDV +NP  L ++ + R ++E+ V  Y+ WQK  EDL+GAKQ+F E+A DPE++EMA LE+ ELE K   +E +L +L+LP DPLD++N+MLEIRAGTGG EA ++AGDL+ +Y +Y +T  W+V ++ ES  D GG+K A+LEI+G+ VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVA+MPEVDDV+V IDPKDI LTTARSGG+GGQNVNKVETA+DL HKP+GIR+FCT+ERSQL+N+E A+ +LR++L+ ++ ++Q+EAV+  RRSQ+G+GSRSEKIRTYN+KD+R TDHRL  NF L   LDG++ D+   C+  +QQ KLE +
Sbjct:    3 ESYLLNKLQSVEQTYTELTRRLADPDVTSNPGELHRLAKSRASLEETVNTYEIWQKSQEDLIGAKQIFKESASDPELREMAALEVAELEAKIATLEDQLTILLLPRDPLDEKNIMLEIRAGTGGDEASIWAGDLVRLYSKYAETQNWKVSLLSESPADMGGFKEAILEIKGDNVYSKLKFEAGVHRVQRVPLTEASGRVHTSTATVAIMPEVDDVEVHIDPKDIELTTARSGGAGGQNVNKVETAVDLIHKPTGIRVFCTEERSQLQNRERAMQILRAKLYDIKLQEQQEAVSSMRRSQVGTGSRSEKIRTYNYKDNRLTDHRLNENFSLDRILDGDIEDVIQSCIAKDQQGKLEEL 359
[Close]
BLAST of NO01G03680 vs. NCBI_GenBank
Match: WP_015145013.1 (peptide chain release factor 1 [Pleurocapsa minor] >AFY78714.1 peptide chain release factor 1 [Pleurocapsa sp. PCC 7327])

HSP 1 Score: 448.4 bits (1152), Expect = 2.600e-122
Identity = 214/357 (59.94%), Postives = 287/357 (80.39%), Query Frame = 0 
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAM 431
            +S++  KL S  +T+KELT RL DPD+  NP  L +V++ R ++E+ V  Y+ W+K  EDL GA+Q+  E+  DPE++EMA LE++ELEEK   +EK+L +L+LP DP DD+N+MLEIRAGTGG EA ++AGDL+ +Y RY ++  W+V++V ES  + GG+K A+LEIQG++VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVA+MPEVD+V+V+IDPKDI + TARSGG+GGQNVNKVETA+DL HKP+GIRIFCT+ERSQL+N+E A+ +LR++L+ ++ ++Q+EAV   RRSQ+G+G+RSEKIRTYN+KD+R TDHRLG NF L   L+GNL D+   C+  +QQE+LE +
Sbjct:    3 ESYLLEKLQSVEQTFKELTRRLADPDIATNPEELQRVSKARSSLEETVNTYETWKKTKEDLAGARQILKESGSDPELREMAALEVEELEEKLAQLEKQLKILLLPRDPNDDKNIMLEIRAGTGGDEASIWAGDLVRMYSRYAESQNWKVKLVSESLAELGGFKEAILEIQGDRVYSKLKFEAGVHRVQRVPVTEAGGRVHTSTATVAIMPEVDEVEVEIDPKDIEIKTARSGGAGGQNVNKVETAVDLIHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEMKLQEQQEAVTSMRRSQVGTGARSEKIRTYNYKDNRVTDHRLGQNFNLAAALEGNLEDMIQACIAQDQQERLEEL 359
[Close]
BLAST of NO01G03680 vs. NCBI_GenBank
Match: WP_066116411.1 (peptide chain release factor 1 [Geminocystis sp. NIES-3709] >BAQ64010.1 peptide chain release factor 1 [Geminocystis sp. NIES-3709])

HSP 1 Score: 448.4 bits (1152), Expect = 2.600e-122
Identity = 216/357 (60.50%), Postives = 283/357 (79.27%), Query Frame = 0 
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAM 431
            +S++  KL S   T+ ELT RLGDPD+  NP  L ++ + R ++E+ V+ YQEWQK   DL GAK+++ E+  DPEMKE+A LEI ELEEK E +EK+L +L+LP DP DD+N+MLEIRAGTGG EA ++AGDL+ +Y RY +T+ W V+++ ES  + GG+K A+LEI G+ VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVA+MPEVD+V+V IDPKDI LTTARSGG+GGQNVNKVETA+DL HKP+GIR+FCT+ERSQLKN+E A+ +LR++L+ ++ ++Q++ V   RRSQ+G+G+RSEKIRTYN+KD+R TDHRLG NF L   L+G + D+   C+  +QQE+LE M
Sbjct:    3 ESYLLEKLASVESTFTELTRRLGDPDIATNPDELQKIAKMRSSLEETVITYQEWQKAQLDLKGAKEIYKESNADPEMKELAGLEIDELEEKIEQLEKQLKLLLLPRDPNDDKNIMLEIRAGTGGDEASIWAGDLVRMYSRYAETVNWNVKLLSESPAEMGGFKEAILEITGDSVYSKLKFEAGVHRVQRVPLTEAGGRVHTSTATVAIMPEVDEVEVHIDPKDIELTTARSGGAGGQNVNKVETAVDLMHKPTGIRVFCTEERSQLKNRERAMQILRAKLYEIKMKEQQDEVTSMRRSQVGTGARSEKIRTYNYKDNRATDHRLGRNFDLNSVLEGKIEDVIQACIGQDQQERLEQM 359
[Close]
BLAST of NO01G03680 vs. NCBI_GenBank
Match: WP_086762874.1 (MULTISPECIES: peptide chain release factor 1 [Nostoc] >OUL28183.1 peptide chain release factor 1 [Nostoc sp. 106C] >OUL31842.1 peptide chain release factor 1 [Nostoc sp. RF31Y])

HSP 1 Score: 448.4 bits (1152), Expect = 2.600e-122
Identity = 216/362 (59.67%), Postives = 284/362 (78.45%), Query Frame = 0 
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAMQLTNA 436
            +S++  KL S  +T+ ELT RLGDPD  +NP    Q+ + R ++E+VV  Y+ W+   EDL+GA+Q++ E+A DPE++EMA LE+ ELE+K E +E +L +L+LP DP DD+N+MLEIRAGTGG EA ++AGDL+ +Y RY    GWRV++V ES  + GG+K  +LEIQGE VYSKLKFEAGVHRVQRVPATE  GRVHTSTATVA+MPEVDDV++ IDPKDI +TTARSGG+GGQNVNKVETA+DL HKP+GIRIFCT+ERSQL+NKE A+ +LR++L+ ++  +Q+EAV   RRSQ+G+GSRSEKIRTYN+KD+R TDHRLG N+ L   L+G+L  +   C+  +QQE+L  +  + A
Sbjct:    3 ESYLLDKLKSVEQTFNELTRRLGDPDTASNPDEYQQIAKSRSSLEEVVNTYETWKAAQEDLIGARQVYKESASDPELQEMAALEVDELEQKLEYLENRLKILLLPRDPNDDKNIMLEIRAGTGGDEASIWAGDLLRMYSRYADGQGWRVKLVSESLGEMGGFKEVILEIQGESVYSKLKFEAGVHRVQRVPATEAGGRVHTSTATVAIMPEVDDVEIHIDPKDIEMTTARSGGAGGQNVNKVETAVDLMHKPTGIRIFCTEERSQLQNKERAMQILRAKLYEMKLREQQEAVTSMRRSQVGTGSRSEKIRTYNYKDNRVTDHRLGQNYSLNPVLEGDLESVIQSCISQDQQERLAELAASGA 364
[Close]
BLAST of NO01G03680 vs. NCBI_GenBank
Match: WP_094342461.1 (peptide chain release factor 1 [Nostoc sp. 'Peltigera membranacea cyanobiont' 232] >OYE04489.1 peptide chain release factor 1 [Nostoc sp. 'Peltigera membranacea cyanobiont' 232])

HSP 1 Score: 448.0 bits (1151), Expect = 3.400e-122
Identity = 217/362 (59.94%), Postives = 287/362 (79.28%), Query Frame = 0 
Query:   74 DSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAMQLTNA 436
            +S++  KL S  +T+ ELT RLGDPD  +NP    ++ + R ++E+VV  Y+ W+   EDL+GA+Q++ E+A DPE++EMA LE+KELEEK E +E +L VL+LP DP D++N+MLEIRAGTGG EA ++AGDL+ +Y RY QT GW+V +V ES+ + GG+K  +LEI+G  VYS+LKFEAGVHRVQRVPATE+ GRVHTSTATVA+MPEVDDV++ IDPKDI +TTARSGG+GGQNVNKVETA DL HKP+GIRIFCT+ERSQL+NKE A+ +LR++L+ ++  +Q+EAV   RRSQ+G+GSRSEKIRTYN+KD+R TDHRLG N+ L   LDG+L  +   C+ L+QQE+L  +  + A
Sbjct:    3 ESYLLDKLKSVEQTFNELTRRLGDPDTASNPDEYQEIAKSRSSLEEVVNTYEIWKTAQEDLIGARQVYKESASDPELQEMASLEVKELEEKIEYLESRLKVLLLPRDPNDEKNIMLEIRAGTGGDEASIWAGDLMQMYTRYAQTQGWKVSLVSESRGEMGGWKEVILEIKGNDVYSQLKFEAGVHRVQRVPATESGGRVHTSTATVAIMPEVDDVEIHIDPKDIEMTTARSGGAGGQNVNKVETAADLMHKPTGIRIFCTEERSQLQNKERAMQILRAKLYEMKLREQQEAVTSMRRSQVGTGSRSEKIRTYNYKDNRATDHRLGQNYSLNPVLDGDLETLIQSCISLDQQERLAELATSAA 364
The following BLAST results are available for this feature:
BLAST of NO01G03680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_002796124.12.400e-12361.30peptide chain release factor 1 [Microcystis aerugi... [more]
WP_106173471.14.000e-12361.90peptide chain release factor 1 [filamentous cyanob... [more]
AKV66660.16.900e-12361.30Peptide chain release factor 1 [Microcystis pannif... [more]
WP_073598912.11.500e-12260.22peptide chain release factor 1 [Hydrococcus rivula... [more]
WP_002764604.11.500e-12261.02peptide chain release factor 1 [Microcystis aerugi... [more]
WP_002743968.12.000e-12260.50peptide chain release factor 1 [Microcystis aerugi... [more]
WP_015145013.12.600e-12259.94peptide chain release factor 1 [Pleurocapsa minor]... [more]
WP_066116411.12.600e-12260.50peptide chain release factor 1 [Geminocystis sp. N... [more]
WP_086762874.12.600e-12259.67MULTISPECIES: peptide chain release factor 1 [Nost... [more]
WP_094342461.13.400e-12259.94peptide chain release factor 1 [Nostoc sp. 'Peltig... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007936NSK007936Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03680.1NO01G03680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577142gene_377Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100152g12gene1327Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03680.1NO01G03680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03680 ID=NO01G03680|Name=NO01G03680|organism=Nannochloropsis oceanica|type=gene|length=1308bp
ATGCCGAGCAGCATCAGTACAAGCAACAGCGGCGGCAGTGCCAAGCCAGG
GTGGGCCCTCGTCCGTAACAAGGTCTCAAATTATTGTTTTGTTGCACTAT
GGTTGGCAGCGACCGCCTCTCTAACCCAAGCCTTCCTTAATCCTGCCGTC
CCCGCCGCCACGTCCGTGATGAGGCCCACTTCGCGAAGAATAAAGCAGCG
CGCTCTGCACATGGTGTTAGACTCGTTTATCAAGACCAAACTCGACAGCT
TCTCCCGCACGTACAAGGAGTTGACCGAGCGCCTGGGGGACCCGGATGTG
ATTGCCAACCCTACCACGCTCATGCAGGTGAACCAAGAGCGCATGAACAT
TGAAGACGTTGTGGTGAATTACCAGGAATGGCAAAAACTCGCAGAGGACT
TGGTGGGGGCCAAGCAACTGTTCAATGAAGCAGCAGGGGACCCGGAAATG
AAAGAGATGGCACGATTGGAAATCAAGGAGCTGGAGGAGAAACAGGAAAT
GATTGAGAAGAAGCTTGTAGTGTTGATGCTGCCCACTGACCCCTTGGACG
ACCGCAACGTGATGTTGGAAATTCGGGCGGGCACGGGAGGGAGCGAGGCA
GGACTATTTGCTGGGGATCTGATCGATGTTTATCAGCGGTATGGACAGAC
TTTGGGCTGGCGGGTGCGCATCGTTGAAGAGTCCAAGAACGACGAAGGAG
GGTACAAGAATGCGGTGTTGGAGATCCAGGGAGAAAAAGTCTATTCGAAG
CTTAAGTTTGAGGCGGGCGTGCATCGTGTGCAGCGAGTACCGGCGACTGA
GACACAGGGGCGGGTACATACCAGTACTGCGACTGTGGCCGTCATGCCTG
AGGTGGACGATGTGCAAGTGAAGATTGACCCCAAGGATATAACATTGACA
ACGGCCCGCTCAGGGGGCTCGGGGGGACAGAACGTGAACAAGGTCGAAAC
GGCAATTGACCTATTTCACAAACCCTCAGGCATCCGTATTTTCTGCACGC
AAGAGCGGTCGCAGCTCAAGAATAAGGAGCTGGCGTTGACCATGTTAAGG
TCACGTTTGTTTGCGTTGGAGCAGGAGAAGCAACGTGAGGCGGTGGCAGG
GCAGCGGCGATCGCAGATCGGCTCGGGGAGTAGGTCAGAGAAGATTAGGA
CGTATAATTGGAAGGATAGTCGGTGCACTGATCACAGGCTGGGGACGAAT
TTTCCGTTGCAAATGTTCTTGGATGGGAATTTGGGAGATATCACCAACCA
GTGTTTGGTGCTAGAGCAGCAGGAGAAGCTGGAAGCGATGCAATTGACTA
ATGCGTAG
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protein sequence of NO01G03680.1

>NO01G03680.1-protein ID=NO01G03680.1-protein|Name=NO01G03680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MPSSISTSNSGGSAKPGWALVRNKVSNYCFVALWLAATASLTQAFLNPAV
PAATSVMRPTSRRIKQRALHMVLDSFIKTKLDSFSRTYKELTERLGDPDV
IANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEM
KEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEA
GLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSK
LKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLT
TARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLR
SRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTN
FPLQMFLDGNLGDITNQCLVLEQQEKLEAMQLTNA*
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Synonyms
Publications