NO01G03680.1, NO01G03680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03680.1
Unique NameNO01G03680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1308
Alignment locationchr1:986867..988174 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:986867..988174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03680.1 vs.
Match: EWM29306.1 (peptide chain release factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 667.2 bits (1720), Expect = 3.600e-188
Identity = 343/419 (81.86%), Postives = 381/419 (90.93%), Query Frame = 0 
Query:   20 LVRNKVSNYCFVALWLAATASLTQAFLNPAVPAATSVMRPTSRRIKQRA---LHMVLDSFIKTKLDSFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEMKEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEAGLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLTTARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLRSRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLGDITNQCLVLEQQEKLEAMQLTNA 436
            +V  ++  +C   L    T  +T AF++P      +++ P+ R I +R    + M LD F++TKL+SFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIE+VVV+YQEWQKLA D+ GAKQLFNEAAGDPEMKEMAR EIK+LEE+QE IEK+LVVLMLP+DPLDD+NVMLEIRAGTGGSEAGLFAGDL+DVYQRYGQ+LGWRVR+VE+S+NDEGGYKNAVLEIQG+KVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVD+VQVKIDPKDITLTTARSGGSGGQNVNKVETA+DL HKP+GIRIFCTQERSQLKNKELA++MLRSRLF LEQEKQR+AVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNL +ITNQCL+LEQQEKLEAMQLTNA
Sbjct:   36 VVAMRLPFHCCCLLGWLTTLIMTHAFVSP------NLVMPSGRSISRRYKDWVSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQLTNA 448
The following BLAST results are available for this feature:
BLAST of NO01G03680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29306.13.600e-18881.86peptide chain release factor 1 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03680NO01G03680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03680.1NO01G03680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03680.1.cds1NO01G03680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03680.1 ID=NO01G03680.1|Name=NO01G03680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp
ATGCCGAGCAGCATCAGTACAAGCAACAGCGGCGGCAGTGCCAAGCCAGG
GTGGGCCCTCGTCCGTAACAAGGTCTCAAATTATTGTTTTGTTGCACTAT
GGTTGGCAGCGACCGCCTCTCTAACCCAAGCCTTCCTTAATCCTGCCGTC
CCCGCCGCCACGTCCGTGATGAGGCCCACTTCGCGAAGAATAAAGCAGCG
CGCTCTGCACATGGTGTTAGACTCGTTTATCAAGACCAAACTCGACAGCT
TCTCCCGCACGTACAAGGAGTTGACCGAGCGCCTGGGGGACCCGGATGTG
ATTGCCAACCCTACCACGCTCATGCAGGTGAACCAAGAGCGCATGAACAT
TGAAGACGTTGTGGTGAATTACCAGGAATGGCAAAAACTCGCAGAGGACT
TGGTGGGGGCCAAGCAACTGTTCAATGAAGCAGCAGGGGACCCGGAAATG
AAAGAGATGGCACGATTGGAAATCAAGGAGCTGGAGGAGAAACAGGAAAT
GATTGAGAAGAAGCTTGTAGTGTTGATGCTGCCCACTGACCCCTTGGACG
ACCGCAACGTGATGTTGGAAATTCGGGCGGGCACGGGAGGGAGCGAGGCA
GGACTATTTGCTGGGGATCTGATCGATGTTTATCAGCGGTATGGACAGAC
TTTGGGCTGGCGGGTGCGCATCGTTGAAGAGTCCAAGAACGACGAAGGAG
GGTACAAGAATGCGGTGTTGGAGATCCAGGGAGAAAAAGTCTATTCGAAG
CTTAAGTTTGAGGCGGGCGTGCATCGTGTGCAGCGAGTACCGGCGACTGA
GACACAGGGGCGGGTACATACCAGTACTGCGACTGTGGCCGTCATGCCTG
AGGTGGACGATGTGCAAGTGAAGATTGACCCCAAGGATATAACATTGACA
ACGGCCCGCTCAGGGGGCTCGGGGGGACAGAACGTGAACAAGGTCGAAAC
GGCAATTGACCTATTTCACAAACCCTCAGGCATCCGTATTTTCTGCACGC
AAGAGCGGTCGCAGCTCAAGAATAAGGAGCTGGCGTTGACCATGTTAAGG
TCACGTTTGTTTGCGTTGGAGCAGGAGAAGCAACGTGAGGCGGTGGCAGG
GCAGCGGCGATCGCAGATCGGCTCGGGGAGTAGGTCAGAGAAGATTAGGA
CGTATAATTGGAAGGATAGTCGGTGCACTGATCACAGGCTGGGGACGAAT
TTTCCGTTGCAAATGTTCTTGGATGGGAATTTGGGAGATATCACCAACCA
GTGTTTGGTGCTAGAGCAGCAGGAGAAGCTGGAAGCGATGCAATTGACTA
ATGCGTAG
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protein sequence of NO01G03680.1

>NO01G03680.1-protein ID=NO01G03680.1-protein|Name=NO01G03680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MPSSISTSNSGGSAKPGWALVRNKVSNYCFVALWLAATASLTQAFLNPAV
PAATSVMRPTSRRIKQRALHMVLDSFIKTKLDSFSRTYKELTERLGDPDV
IANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEM
KEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEA
GLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSK
LKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLT
TARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLR
SRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTN
FPLQMFLDGNLGDITNQCLVLEQQEKLEAMQLTNA*
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mRNA from alignment at chr1:986867..988174+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03680.1 ID=NO01G03680.1|Name=NO01G03680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at chr1:986867..988174+ (Nannochloropsis oceanica)
ATGCCGAGCAGCATCAGTACAAGCAACAGCGGCGGCAGTGCCAAGCCAGG
GTGGGCCCTCGTCCGTAACAAGGTCTCAAATTATTGTTTTGTTGCACTAT
GGTTGGCAGCGACCGCCTCTCTAACCCAAGCCTTCCTTAATCCTGCCGTC
CCCGCCGCCACGTCCGTGATGAGGCCCACTTCGCGAAGAATAAAGCAGCG
CGCTCTGCACATGGTGTTAGACTCGTTTATCAAGACCAAACTCGACAGCT
TCTCCCGCACGTACAAGGAGTTGACCGAGCGCCTGGGGGACCCGGATGTG
ATTGCCAACCCTACCACGCTCATGCAGGTGAACCAAGAGCGCATGAACAT
TGAAGACGTTGTGGTGAATTACCAGGAATGGCAAAAACTCGCAGAGGACT
TGGTGGGGGCCAAGCAACTGTTCAATGAAGCAGCAGGGGACCCGGAAATG
AAAGAGATGGCACGATTGGAAATCAAGGAGCTGGAGGAGAAACAGGAAAT
GATTGAGAAGAAGCTTGTAGTGTTGATGCTGCCCACTGACCCCTTGGACG
ACCGCAACGTGATGTTGGAAATTCGGGCGGGCACGGGAGGGAGCGAGGCA
GGACTATTTGCTGGGGATCTGATCGATGTTTATCAGCGGTATGGACAGAC
TTTGGGCTGGCGGGTGCGCATCGTTGAAGAGTCCAAGAACGACGAAGGAG
GGTACAAGAATGCGGTGTTGGAGATCCAGGGAGAAAAAGTCTATTCGAAG
CTTAAGTTTGAGGCGGGCGTGCATCGTGTGCAGCGAGTACCGGCGACTGA
GACACAGGGGCGGGTACATACCAGTACTGCGACTGTGGCCGTCATGCCTG
AGGTGGACGATGTGCAAGTGAAGATTGACCCCAAGGATATAACATTGACA
ACGGCCCGCTCAGGGGGCTCGGGGGGACAGAACGTGAACAAGGTCGAAAC
GGCAATTGACCTATTTCACAAACCCTCAGGCATCCGTATTTTCTGCACGC
AAGAGCGGTCGCAGCTCAAGAATAAGGAGCTGGCGTTGACCATGTTAAGG
TCACGTTTGTTTGCGTTGGAGCAGGAGAAGCAACGTGAGGCGGTGGCAGG
GCAGCGGCGATCGCAGATCGGCTCGGGGAGTAGGTCAGAGAAGATTAGGA
CGTATAATTGGAAGGATAGTCGGTGCACTGATCACAGGCTGGGGACGAAT
TTTCCGTTGCAAATGTTCTTGGATGGGAATTTGGGAGATATCACCAACCA
GTGTTTGGTGCTAGAGCAGCAGGAGAAGCTGGAAGCGATGCAATTGACTA
ATGCGTAG
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Coding sequence (CDS) from alignment at chr1:986867..988174+

>NO01G03680.1 ID=NO01G03680.1|Name=NO01G03680.1|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr1:986867..988174+ (Nannochloropsis oceanica)
ATGCCGAGCAGCATCAGTACAAGCAACAGCGGCGGCAGTGCCAAGCCAGG
GTGGGCCCTCGTCCGTAACAAGGTCTCAAATTATTGTTTTGTTGCACTAT
GGTTGGCAGCGACCGCCTCTCTAACCCAAGCCTTCCTTAATCCTGCCGTC
CCCGCCGCCACGTCCGTGATGAGGCCCACTTCGCGAAGAATAAAGCAGCG
CGCTCTGCACATGGTGTTAGACTCGTTTATCAAGACCAAACTCGACAGCT
TCTCCCGCACGTACAAGGAGTTGACCGAGCGCCTGGGGGACCCGGATGTG
ATTGCCAACCCTACCACGCTCATGCAGGTGAACCAAGAGCGCATGAACAT
TGAAGACGTTGTGGTGAATTACCAGGAATGGCAAAAACTCGCAGAGGACT
TGGTGGGGGCCAAGCAACTGTTCAATGAAGCAGCAGGGGACCCGGAAATG
AAAGAGATGGCACGATTGGAAATCAAGGAGCTGGAGGAGAAACAGGAAAT
GATTGAGAAGAAGCTTGTAGTGTTGATGCTGCCCACTGACCCCTTGGACG
ACCGCAACGTGATGTTGGAAATTCGGGCGGGCACGGGAGGGAGCGAGGCA
GGACTATTTGCTGGGGATCTGATCGATGTTTATCAGCGGTATGGACAGAC
TTTGGGCTGGCGGGTGCGCATCGTTGAAGAGTCCAAGAACGACGAAGGAG
GGTACAAGAATGCGGTGTTGGAGATCCAGGGAGAAAAAGTCTATTCGAAG
CTTAAGTTTGAGGCGGGCGTGCATCGTGTGCAGCGAGTACCGGCGACTGA
GACACAGGGGCGGGTACATACCAGTACTGCGACTGTGGCCGTCATGCCTG
AGGTGGACGATGTGCAAGTGAAGATTGACCCCAAGGATATAACATTGACA
ACGGCCCGCTCAGGGGGCTCGGGGGGACAGAACGTGAACAAGGTCGAAAC
GGCAATTGACCTATTTCACAAACCCTCAGGCATCCGTATTTTCTGCACGC
AAGAGCGGTCGCAGCTCAAGAATAAGGAGCTGGCGTTGACCATGTTAAGG
TCACGTTTGTTTGCGTTGGAGCAGGAGAAGCAACGTGAGGCGGTGGCAGG
GCAGCGGCGATCGCAGATCGGCTCGGGGAGTAGGTCAGAGAAGATTAGGA
CGTATAATTGGAAGGATAGTCGGTGCACTGATCACAGGCTGGGGACGAAT
TTTCCGTTGCAAATGTTCTTGGATGGGAATTTGGGAGATATCACCAACCA
GTGTTTGGTGCTAGAGCAGCAGGAGAAGCTGGAAGCGATGCAATTGACTA
ATGCGTAG
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Synonyms
Publications